Wall clock time and date at job start Fri Apr 10 2020 22:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46645 * 2 1 4 4 H 1.09006 * 109.46982 * 181.99780 * 3 2 1 5 5 C 1.50700 * 109.47697 * 62.00107 * 3 2 1 6 6 H 1.08001 * 119.99569 * 243.12525 * 5 3 2 7 7 C 1.37872 * 119.99839 * 63.11388 * 5 3 2 8 8 N 1.31517 * 119.99728 * 190.66286 * 7 5 3 9 9 Si 1.86802 * 120.00203 * 10.67371 * 7 5 3 10 10 H 1.48500 * 109.47122 * 95.05892 * 9 7 5 11 11 H 1.48502 * 109.46880 * 215.05619 * 9 7 5 12 12 H 1.48497 * 109.46974 * 335.05978 * 9 7 5 13 13 N 1.46904 * 109.47235 * 301.99587 * 3 2 1 14 14 C 1.46851 * 110.99671 * 302.72567 * 13 3 2 15 15 C 1.53041 * 109.53175 * 173.87312 * 14 13 3 16 16 C 1.53161 * 109.25388 * 59.48366 * 15 14 13 17 17 C 1.52892 * 109.20331 * 302.78967 * 16 15 14 18 18 C 1.54212 * 109.41317 * 177.08356 * 17 16 15 19 19 C 1.55343 * 102.19361 * 140.97383 * 18 17 16 20 20 H 1.09002 * 111.12352 * 83.92970 * 19 18 17 21 21 C 1.52999 * 111.12159 * 208.08132 * 19 18 17 22 22 C 1.52999 * 109.47310 * 184.99891 * 21 19 18 23 23 O 1.42898 * 109.47551 * 179.97438 * 22 21 19 24 24 C 1.42903 * 114.00069 * 179.97438 * 23 22 21 25 25 C 1.54962 * 100.95834 * 326.00296 * 19 18 17 26 26 O 1.43007 * 110.08236 * 295.37073 * 17 16 15 27 27 C 1.46872 * 111.00078 * 178.54164 * 13 3 2 28 28 H 1.08998 * 109.47570 * 304.58324 * 1 2 3 29 29 H 1.09008 * 109.46809 * 64.58283 * 1 2 3 30 30 H 1.09002 * 109.46923 * 184.57776 * 1 2 3 31 31 H 1.08999 * 109.47420 * 240.00197 * 2 1 3 32 32 H 1.09002 * 109.47103 * 119.99440 * 2 1 3 33 33 H 0.97000 * 119.99680 * 180.02562 * 8 7 5 34 34 H 1.08996 * 109.46488 * 293.89709 * 14 13 3 35 35 H 1.08999 * 109.45760 * 53.86264 * 14 13 3 36 36 H 1.08999 * 109.51038 * 299.55159 * 15 14 13 37 37 H 1.08996 * 109.54228 * 179.44032 * 15 14 13 38 38 H 1.08999 * 109.51097 * 182.87280 * 16 15 14 39 39 H 1.08998 * 109.55970 * 62.73564 * 16 15 14 40 40 H 1.08998 * 110.86287 * 259.15088 * 18 17 16 41 41 H 1.09011 * 110.85818 * 22.59384 * 18 17 16 42 42 H 1.09004 * 109.47423 * 305.00086 * 21 19 18 43 43 H 1.08998 * 109.47369 * 65.00197 * 21 19 18 44 44 H 1.09004 * 109.47037 * 300.00432 * 22 21 19 45 45 H 1.09005 * 109.47031 * 59.99836 * 22 21 19 46 46 H 1.08997 * 109.47266 * 300.00206 * 24 23 22 47 47 H 1.09004 * 109.47073 * 60.00439 * 24 23 22 48 48 H 1.08998 * 109.46971 * 180.02562 * 24 23 22 49 49 H 1.08996 * 110.31150 * 155.25474 * 25 19 18 50 50 H 1.09001 * 110.30840 * 277.42616 * 25 19 18 51 51 H 1.09000 * 109.45450 * 305.38459 * 27 13 3 52 52 H 1.09005 * 109.45716 * 65.31706 * 27 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1294 1.4429 -0.0358 5 6 1.5785 2.1386 1.2545 6 1 0.9138 2.9873 1.1878 7 6 2.0047 1.6918 2.4872 8 7 1.4463 2.1559 3.5838 9 14 3.3753 0.4276 2.5999 10 1 4.6732 1.1212 2.7989 11 1 3.1182 -0.4802 3.7466 12 1 3.4240 -0.3629 1.3437 13 7 1.5112 2.1489 -1.1746 14 6 1.8877 1.4606 -2.4160 15 6 1.1962 2.1333 -3.6040 16 6 1.6224 3.6029 -3.6706 17 6 1.2796 4.2865 -2.3467 18 6 1.7728 5.7472 -2.3812 19 6 0.6227 6.4990 -1.6565 20 1 0.7479 6.4590 -0.5744 21 6 0.5169 7.9456 -2.1434 22 6 -0.5403 8.6847 -1.3206 23 8 -0.6388 10.0359 -1.7750 24 6 -1.6043 10.8177 -1.0687 25 6 -0.6039 5.6667 -2.1080 26 8 -0.1378 4.3081 -2.1577 27 6 1.9528 3.5495 -1.1895 28 1 -0.3634 0.5833 0.8460 29 1 -0.3633 0.4411 -0.9283 30 1 -0.3633 -1.0244 0.0820 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.7464 1.8418 4.4511 34 1 2.9685 1.5137 -2.5472 35 1 1.5797 0.4166 -2.3602 36 1 0.1152 2.0733 -3.4777 37 1 1.4833 1.6289 -4.5265 38 1 1.0932 4.0990 -4.4843 39 1 2.6967 3.6638 -3.8444 40 1 2.7103 5.8534 -1.8355 41 1 1.8820 6.0958 -3.4083 42 1 1.4809 8.4404 -2.0249 43 1 0.2305 7.9550 -3.1951 44 1 -1.5043 8.1899 -1.4391 45 1 -0.2540 8.6754 -0.2689 46 1 -2.5903 10.3673 -1.1828 47 1 -1.3407 10.8523 -0.0116 48 1 -1.6185 11.8297 -1.4733 49 1 -1.4133 5.7627 -1.3845 50 1 -0.9371 5.9886 -3.0946 51 1 1.6800 4.0262 -0.2479 52 1 3.0349 3.5878 -1.3152 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255167587.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:40:22 Heat of formation + Delta-G solvation = -91.092848 kcal Electronic energy + Delta-G solvation = -28138.575754 eV Core-core repulsion = 24523.997656 eV Total energy + Delta-G solvation = -3614.578097 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.17555 -38.17960 -37.41852 -34.59836 -33.71662 -31.94570 -30.97810 -30.71026 -28.74752 -26.87580 -26.34752 -25.25511 -23.95448 -23.28518 -22.39133 -21.39323 -20.47514 -19.22499 -18.72820 -16.56559 -16.42897 -16.34621 -15.88660 -15.73160 -15.17627 -14.98787 -14.48647 -14.24867 -13.91155 -13.68699 -13.52829 -13.16357 -13.03213 -12.74468 -12.69313 -12.52809 -12.29736 -11.99338 -11.89282 -11.71619 -11.40339 -11.26456 -11.18077 -11.12954 -10.90818 -10.77708 -10.60766 -10.48113 -10.35541 -10.04958 -9.98610 -9.97407 -9.82315 -9.79500 -9.11087 -8.92729 -8.80932 -8.42000 -7.15297 -6.03416 -3.97423 3.28585 3.38361 3.40948 3.52559 4.09982 4.45216 4.51536 4.77518 4.82041 4.90804 5.01361 5.08160 5.16275 5.20669 5.21487 5.29273 5.30931 5.38988 5.41412 5.42796 5.45699 5.60059 5.70946 5.80198 5.86815 5.89183 5.94771 5.99319 6.06887 6.10509 6.17087 6.19328 6.23465 6.29754 6.33267 6.37125 6.50805 6.56883 6.71513 6.81080 6.88144 6.96490 7.04780 7.17981 7.26194 7.52412 7.61013 7.76565 8.07443 8.22251 8.74421 9.07486 9.61908 11.09417 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.014208 B = 0.003991 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.199543 B = 7013.882565 C = 8229.660250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.121 4.121 3 C 0.190 3.810 4 H -0.012 1.012 5 C -0.496 4.496 6 H 0.082 0.918 7 C 0.074 3.926 8 N -0.897 5.897 9 Si 0.854 3.146 10 H -0.285 1.285 11 H -0.288 1.288 12 H -0.247 1.247 13 N -0.507 5.507 14 C 0.048 3.952 15 C -0.110 4.110 16 C -0.120 4.120 17 C 0.115 3.885 18 C -0.140 4.140 19 C -0.122 4.122 20 H 0.093 0.907 21 C -0.103 4.103 22 C 0.058 3.942 23 O -0.395 6.395 24 C 0.032 3.968 25 C 0.054 3.946 26 O -0.343 6.343 27 C 0.067 3.933 28 H 0.070 0.930 29 H 0.051 0.949 30 H 0.018 0.982 31 H 0.028 0.972 32 H 0.057 0.943 33 H 0.261 0.739 34 H 0.015 0.985 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.054 0.946 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.051 0.949 45 H 0.052 0.948 46 H 0.041 0.959 47 H 0.041 0.959 48 H 0.083 0.917 49 H 0.079 0.921 50 H 0.052 0.948 51 H 0.095 0.905 52 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.019 10.001 -13.322 16.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.159 4.159 3 C 0.082 3.918 4 H 0.005 0.995 5 C -0.534 4.534 6 H 0.100 0.900 7 C -0.128 4.128 8 N -0.535 5.535 9 Si 0.682 3.318 10 H -0.212 1.212 11 H -0.214 1.214 12 H -0.172 1.172 13 N -0.231 5.231 14 C -0.081 4.081 15 C -0.147 4.147 16 C -0.158 4.158 17 C 0.075 3.925 18 C -0.178 4.178 19 C -0.141 4.141 20 H 0.111 0.889 21 C -0.141 4.141 22 C -0.018 4.018 23 O -0.315 6.315 24 C -0.065 4.065 25 C -0.024 4.024 26 O -0.262 6.262 27 C -0.062 4.062 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.037 0.963 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.033 0.967 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.059 0.941 47 H 0.060 0.940 48 H 0.102 0.898 49 H 0.098 0.902 50 H 0.070 0.930 51 H 0.113 0.887 52 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -2.547 9.850 -13.208 16.672 hybrid contribution 1.642 -0.543 0.494 1.799 sum -0.905 9.307 -12.714 15.782 Atomic orbital electron populations 1.21482 0.95558 0.98128 1.03020 1.22052 0.97229 0.97762 0.98822 1.19625 0.91675 0.91082 0.89392 0.99498 1.20879 1.29109 1.15673 0.87782 0.90046 1.24850 0.96181 0.95988 0.95734 1.69934 1.41023 1.44865 0.97703 0.87443 0.83265 0.82585 0.78477 1.21159 1.21383 1.17161 1.61752 1.59669 1.00615 1.01050 1.22144 0.96054 0.98858 0.91007 1.21488 1.02004 0.94389 0.96866 1.21862 1.00384 0.96991 0.96515 1.21955 0.82099 0.93509 0.94908 1.23185 0.99093 0.94477 1.01014 1.22826 0.95817 0.93709 1.01700 0.88852 1.21404 0.99143 0.93567 0.99991 1.22631 0.99080 0.82070 0.98048 1.87844 1.60275 1.22902 1.60430 1.22729 0.91581 0.95789 0.96409 1.23426 0.96270 0.82916 0.99740 1.88581 1.20340 1.23573 1.93673 1.22223 0.94893 0.90566 0.98481 0.91113 0.93028 0.96259 0.95380 0.92506 0.92869 0.96669 0.90840 0.90643 0.92773 0.92205 0.91869 0.89959 0.90659 0.90792 0.91006 0.93054 0.92930 0.94060 0.93992 0.89801 0.90249 0.92971 0.88722 0.95720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.67 9.52 37.16 0.35 -2.32 16 2 C -0.12 -2.68 4.42 -26.73 -0.12 -2.80 16 3 C 0.19 4.45 1.31 -68.86 -0.09 4.36 16 4 H -0.01 -0.30 7.05 -51.93 -0.37 -0.67 16 5 C -0.50 -13.47 7.03 -34.44 -0.24 -13.71 16 6 H 0.08 2.44 6.97 -52.49 -0.37 2.08 16 7 C 0.07 2.08 5.39 -17.82 -0.10 1.98 16 8 N -0.90 -26.87 13.96 55.43 0.77 -26.10 16 9 Si 0.85 20.98 25.76 -169.99 -4.38 16.60 16 10 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.25 -5.72 5.07 56.52 0.29 -5.43 16 13 N -0.51 -10.48 3.70 -228.18 -0.84 -11.33 16 14 C 0.05 0.84 5.10 -3.83 -0.02 0.82 16 15 C -0.11 -1.65 5.97 -26.63 -0.16 -1.81 16 16 C -0.12 -1.67 4.85 -26.70 -0.13 -1.80 16 17 C 0.12 1.80 0.82 -90.13 -0.07 1.72 16 18 C -0.14 -1.76 5.55 -24.85 -0.14 -1.90 16 19 C -0.12 -1.49 3.05 -88.34 -0.27 -1.76 16 20 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 21 C -0.10 -1.08 5.11 -26.73 -0.14 -1.21 16 22 C 0.06 0.61 5.85 37.16 0.22 0.83 16 23 O -0.40 -4.48 10.70 -35.23 -0.38 -4.85 16 24 C 0.03 0.26 11.01 101.05 1.11 1.37 16 25 C 0.05 0.72 6.78 38.19 0.26 0.98 16 26 O -0.34 -5.91 10.21 -35.23 -0.36 -6.27 16 27 C 0.07 1.28 4.03 -3.93 -0.02 1.26 16 28 H 0.07 1.72 7.13 -51.93 -0.37 1.35 16 29 H 0.05 1.07 7.64 -51.92 -0.40 0.68 16 30 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.03 0.56 6.34 -51.93 -0.33 0.23 16 32 H 0.06 1.32 4.20 -51.93 -0.22 1.10 16 33 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.02 0.27 8.14 -51.93 -0.42 -0.16 16 35 H 0.07 1.30 5.96 -51.93 -0.31 0.99 16 36 H 0.07 1.24 7.90 -51.93 -0.41 0.83 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.08 1.02 7.79 -51.93 -0.40 0.62 16 41 H 0.07 0.82 7.73 -51.92 -0.40 0.42 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.07 0.72 7.95 -51.93 -0.41 0.31 16 44 H 0.05 0.51 7.78 -51.93 -0.40 0.10 16 45 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 47 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 50 H 0.05 0.62 7.89 -51.93 -0.41 0.21 16 51 H 0.09 2.07 6.27 -51.93 -0.33 1.74 16 52 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 382.14 15.07 5.76 5.76 Total: -1.00 -30.33 382.14 -8.84 -39.17 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -9.87 Total: 0.99 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: 0.45 Total: -13.97 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: -0.07 Total: -37.43 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: -0.74 Total: -11.12 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.38 Total: 16.60 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.33 -8.84 -39.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167587.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.920 kcal (2) G-P(sol) polarization free energy of solvation -30.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds