Wall clock time and date at job start Fri Apr 10 2020 22:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46774 * 2 1 4 4 H 1.09004 * 109.46977 * 181.53859 * 3 2 1 5 5 C 1.50700 * 109.47189 * 61.54320 * 3 2 1 6 6 H 1.08002 * 119.99870 * 239.99776 * 5 3 2 7 7 C 1.37873 * 120.00112 * 59.99854 * 5 3 2 8 8 N 1.31509 * 120.00154 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 120.00084 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46937 * 89.99863 * 9 7 5 11 11 H 1.48496 * 109.46922 * 209.99844 * 9 7 5 12 12 H 1.48500 * 109.46732 * 330.00008 * 9 7 5 13 13 N 1.46896 * 109.47387 * 301.53756 * 3 2 1 14 14 C 1.46840 * 111.00451 * 301.49630 * 13 3 2 15 15 C 1.53044 * 109.58824 * 173.93249 * 14 13 3 16 16 C 1.53164 * 109.24338 * 59.43093 * 15 14 13 17 17 C 1.52910 * 109.14659 * 302.76072 * 16 15 14 18 18 C 1.54194 * 109.44832 * 177.32866 * 17 16 15 19 19 C 1.55349 * 102.19168 * 98.43006 * 18 17 16 20 20 H 1.09007 * 111.12094 * 276.04526 * 19 18 17 21 21 C 1.53007 * 111.12121 * 151.89842 * 19 18 17 22 22 C 1.52996 * 109.47214 * 181.96483 * 21 19 18 23 23 O 1.42903 * 109.46834 * 179.97438 * 22 21 19 24 24 C 1.42900 * 113.99420 * 180.02562 * 23 22 21 25 25 C 1.54966 * 100.96742 * 33.97283 * 19 18 17 26 26 O 1.43032 * 110.02693 * 295.61949 * 17 16 15 27 27 C 1.46902 * 111.00069 * 177.30822 * 13 3 2 28 28 H 1.08995 * 109.47190 * 174.54130 * 1 2 3 29 29 H 1.08993 * 109.47540 * 54.53686 * 1 2 3 30 30 H 1.09008 * 109.46952 * 294.53599 * 1 2 3 31 31 H 1.08994 * 109.47514 * 119.99951 * 2 1 3 32 32 H 1.08995 * 109.46912 * 240.00401 * 2 1 3 33 33 H 0.96999 * 120.00293 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.45346 * 293.96742 * 14 13 3 35 35 H 1.09000 * 109.44991 * 53.89583 * 14 13 3 36 36 H 1.08997 * 109.50127 * 299.49957 * 15 14 13 37 37 H 1.08994 * 109.54461 * 179.38350 * 15 14 13 38 38 H 1.08996 * 109.52686 * 182.86178 * 16 15 14 39 39 H 1.09002 * 109.52367 * 62.65691 * 16 15 14 40 40 H 1.08995 * 110.85627 * 216.60337 * 18 17 16 41 41 H 1.09002 * 110.85725 * 340.25664 * 18 17 16 42 42 H 1.08999 * 109.46581 * 301.96822 * 21 19 18 43 43 H 1.08996 * 109.46742 * 61.96231 * 21 19 18 44 44 H 1.08998 * 109.46996 * 300.00117 * 22 21 19 45 45 H 1.09002 * 109.47247 * 59.99828 * 22 21 19 46 46 H 1.08995 * 109.47403 * 299.99706 * 24 23 22 47 47 H 1.08998 * 109.47430 * 60.00244 * 24 23 22 48 48 H 1.09004 * 109.46666 * 179.97438 * 24 23 22 49 49 H 1.08994 * 110.30603 * 204.74647 * 25 19 18 50 50 H 1.08999 * 110.30707 * 82.57770 * 25 19 18 51 51 H 1.08996 * 109.46168 * 305.38648 * 27 13 3 52 52 H 1.09001 * 109.45835 * 65.37146 * 27 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1296 1.4427 -0.0276 5 6 1.5690 2.1418 1.2491 6 1 0.9459 3.0207 1.1737 7 6 1.9337 1.6596 2.4882 8 7 2.6921 0.5891 2.5801 9 14 1.3506 2.5268 4.0367 10 1 0.0529 1.9486 4.4689 11 1 2.3565 2.3459 5.1139 12 1 1.1788 3.9753 3.7578 13 7 1.5201 2.1457 -1.1804 14 6 1.9304 1.4706 -2.4182 15 6 1.2503 2.1376 -3.6160 16 6 1.6527 3.6146 -3.6670 17 6 1.2716 4.2841 -2.3461 18 6 1.7340 5.7549 -2.3639 19 6 0.4293 6.5043 -2.7507 20 1 0.2871 6.5132 -3.8314 21 6 0.4215 7.9258 -2.1845 22 6 -0.8979 8.6112 -2.5454 23 8 -0.9054 9.9386 -2.0161 24 6 -2.1003 10.6698 -2.2979 25 6 -0.6360 5.6201 -2.0545 26 8 -0.1495 4.2742 -2.1840 27 6 1.9378 3.5541 -1.1805 28 1 -0.3633 -1.0229 -0.0978 29 1 -0.3634 0.5962 -0.8369 30 1 -0.3633 0.4268 0.9349 31 1 1.8934 -0.5138 0.8899 32 1 1.8933 -0.5137 -0.8900 33 1 2.9484 0.2497 3.4519 34 1 3.0124 1.5419 -2.5291 35 1 1.6388 0.4213 -2.3731 36 1 0.1683 2.0584 -3.5107 37 1 1.5638 1.6430 -4.5353 38 1 1.1312 4.1061 -4.4882 39 1 2.7292 3.6939 -3.8182 40 1 2.0816 6.0643 -1.3783 41 1 2.5078 5.9094 -3.1159 42 1 0.5254 7.8855 -1.1002 43 1 1.2520 8.4902 -2.6084 44 1 -1.0017 8.6514 -3.6297 45 1 -1.7285 8.0467 -2.1216 46 1 -2.2294 10.7531 -3.3770 47 1 -2.9556 10.1477 -1.8690 48 1 -2.0277 11.6664 -1.8623 49 1 -1.5990 5.7241 -2.5542 50 1 -0.7236 5.8911 -1.0023 51 1 1.6402 4.0212 -0.2417 52 1 3.0210 3.6116 -1.2875 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255167588.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:40:25 Heat of formation + Delta-G solvation = -99.400289 kcal Electronic energy + Delta-G solvation = -28068.614476 eV Core-core repulsion = 24453.676141 eV Total energy + Delta-G solvation = -3614.938335 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.15998 -38.21392 -37.28193 -34.48027 -33.74515 -31.83087 -30.86237 -30.39634 -28.74224 -26.47182 -26.36037 -25.22087 -24.04820 -23.37683 -22.26933 -21.27227 -20.51683 -19.12886 -18.56021 -16.64900 -16.45214 -16.01663 -15.86545 -15.65407 -15.05274 -15.00312 -14.53478 -14.24396 -14.01557 -13.65463 -13.30969 -13.21255 -12.90423 -12.60607 -12.58480 -12.27684 -12.17786 -11.82173 -11.73404 -11.66500 -11.46097 -11.24963 -11.06887 -11.01320 -10.84929 -10.71450 -10.58288 -10.42872 -10.40534 -10.03941 -9.99705 -9.89934 -9.78338 -9.52633 -9.34743 -8.87263 -8.66808 -8.32383 -6.95910 -5.94131 -3.96918 3.34301 3.40822 3.43803 3.46293 4.09653 4.46232 4.47614 4.68964 4.89183 4.94212 4.97376 5.05890 5.11642 5.15582 5.16694 5.21387 5.34740 5.37839 5.38499 5.44677 5.48777 5.63736 5.72227 5.79382 5.89332 5.92284 5.96251 5.98478 6.09306 6.20450 6.24284 6.24968 6.34625 6.41710 6.52449 6.66850 6.73648 6.79098 6.83255 6.90402 6.92083 7.25087 7.41778 7.49379 7.55805 7.76422 7.87207 7.91572 8.31115 8.44163 8.72562 9.09398 9.66821 11.12353 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.012816 B = 0.004089 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.251244 B = 6845.825564 C = 8365.811777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.110 4.110 3 C 0.217 3.783 4 H -0.006 1.006 5 C -0.492 4.492 6 H 0.062 0.938 7 C 0.059 3.941 8 N -0.894 5.894 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.517 5.517 14 C 0.051 3.949 15 C -0.110 4.110 16 C -0.117 4.117 17 C 0.115 3.885 18 C -0.140 4.140 19 C -0.120 4.120 20 H 0.084 0.916 21 C -0.107 4.107 22 C 0.060 3.940 23 O -0.393 6.393 24 C 0.032 3.968 25 C 0.052 3.948 26 O -0.344 6.344 27 C 0.066 3.934 28 H 0.012 0.988 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.090 0.910 32 H 0.013 0.987 33 H 0.259 0.741 34 H 0.014 0.986 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.052 0.948 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.048 0.952 45 H 0.052 0.948 46 H 0.039 0.961 47 H 0.041 0.959 48 H 0.084 0.916 49 H 0.075 0.925 50 H 0.059 0.941 51 H 0.088 0.912 52 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.096 13.124 -13.183 19.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.149 4.149 3 C 0.111 3.889 4 H 0.011 0.989 5 C -0.531 4.531 6 H 0.080 0.920 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.241 5.241 14 C -0.078 4.078 15 C -0.148 4.148 16 C -0.154 4.154 17 C 0.075 3.925 18 C -0.179 4.179 19 C -0.139 4.139 20 H 0.102 0.898 21 C -0.144 4.144 22 C -0.017 4.017 23 O -0.312 6.312 24 C -0.065 4.065 25 C -0.025 4.025 26 O -0.262 6.262 27 C -0.063 4.063 28 H 0.031 0.969 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.109 0.891 32 H 0.031 0.969 33 H 0.069 0.931 34 H 0.032 0.968 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.092 0.908 44 H 0.066 0.934 45 H 0.070 0.930 46 H 0.058 0.942 47 H 0.060 0.940 48 H 0.103 0.897 49 H 0.093 0.907 50 H 0.077 0.923 51 H 0.107 0.893 52 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -5.482 12.865 -12.894 19.022 hybrid contribution 0.484 0.557 0.690 1.010 sum -4.998 13.422 -12.204 18.817 Atomic orbital electron populations 1.21453 0.97228 0.97111 1.01987 1.21564 0.95239 0.98161 0.99899 1.19237 0.92240 0.90912 0.86472 0.98893 1.21093 1.30567 1.11803 0.89634 0.91956 1.24891 0.95287 0.95124 0.98842 1.69878 1.36752 1.22758 1.23971 0.86608 0.78405 0.79998 0.83062 1.20723 1.21475 1.20030 1.61927 1.59945 1.00448 1.01816 1.22084 0.95784 0.98986 0.90924 1.21500 1.01966 0.94289 0.97038 1.21831 1.00197 0.97042 0.96365 1.21994 0.81866 0.93345 0.95301 1.23213 0.97224 0.94532 1.02887 1.22802 0.96320 0.94143 1.00627 0.89795 1.21429 0.96648 0.93947 1.02402 1.22609 0.98622 0.83006 0.97434 1.87875 1.38978 1.26433 1.77954 1.22730 0.87311 0.96669 0.99789 1.23441 0.96594 0.82942 0.99569 1.88572 1.19923 1.24004 1.93744 1.22214 0.95273 0.91104 0.97704 0.96872 0.93133 0.92866 0.89144 0.96883 0.93131 0.96802 0.90865 0.90814 0.92901 0.92360 0.91895 0.90011 0.90331 0.90492 0.90832 0.93385 0.93000 0.94191 0.94007 0.89710 0.90668 0.92254 0.89332 0.95760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.75 9.49 37.16 0.35 -2.40 16 2 C -0.11 -2.69 5.05 -26.73 -0.14 -2.82 16 3 C 0.22 5.46 1.76 -68.87 -0.12 5.34 16 4 H -0.01 -0.18 8.14 -51.93 -0.42 -0.60 16 5 C -0.49 -13.31 6.77 -34.44 -0.23 -13.54 16 6 H 0.06 1.71 6.50 -52.49 -0.34 1.37 16 7 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 8 N -0.89 -25.46 11.31 55.43 0.63 -24.83 16 9 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 N -0.52 -11.16 3.53 -228.18 -0.80 -11.96 16 14 C 0.05 0.96 5.18 -3.83 -0.02 0.94 16 15 C -0.11 -1.73 5.97 -26.62 -0.16 -1.89 16 16 C -0.12 -1.67 4.85 -26.69 -0.13 -1.80 16 17 C 0.11 1.82 0.82 -90.13 -0.07 1.74 16 18 C -0.14 -1.78 5.55 -24.86 -0.14 -1.92 16 19 C -0.12 -1.32 3.13 -88.33 -0.28 -1.59 16 20 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 21 C -0.11 -1.08 5.10 -26.73 -0.14 -1.22 16 22 C 0.06 0.57 5.79 37.16 0.22 0.79 16 23 O -0.39 -4.31 10.70 -35.23 -0.38 -4.69 16 24 C 0.03 0.24 11.01 101.05 1.11 1.35 16 25 C 0.05 0.68 6.45 38.20 0.25 0.93 16 26 O -0.34 -5.91 10.19 -35.23 -0.36 -6.27 16 27 C 0.07 1.30 4.04 -3.92 -0.02 1.28 16 28 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.05 1.13 7.39 -51.93 -0.38 0.75 16 30 H 0.05 1.31 7.46 -51.92 -0.39 0.92 16 31 H 0.09 2.45 6.03 -51.93 -0.31 2.14 16 32 H 0.01 0.29 6.33 -51.93 -0.33 -0.04 16 33 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 34 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.07 1.41 5.98 -51.93 -0.31 1.10 16 36 H 0.07 1.26 7.89 -51.93 -0.41 0.85 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.85 8.12 -51.93 -0.42 0.43 16 40 H 0.08 1.08 7.72 -51.93 -0.40 0.68 16 41 H 0.08 0.87 7.78 -51.93 -0.40 0.47 16 42 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.05 0.48 7.49 -51.93 -0.39 0.09 16 46 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 47 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 48 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 50 H 0.06 0.82 7.99 -51.93 -0.42 0.41 16 51 H 0.09 1.94 6.13 -51.93 -0.32 1.62 16 52 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 387.89 15.07 5.85 5.85 Total: -1.00 -29.56 387.89 -9.57 -39.13 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -9.87 Total: -0.40 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: 0.39 Total: -13.28 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: -0.18 Total: -36.79 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: -0.74 Total: -10.96 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.56 -9.57 -39.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167588.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.271 kcal (2) G-P(sol) polarization free energy of solvation -29.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds