Wall clock time and date at job start Fri Apr 10 2020 22:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47020 * 2 1 4 4 H 1.09005 * 109.47239 * 178.48331 * 3 2 1 5 5 C 1.50703 * 109.47260 * 298.47776 * 3 2 1 6 6 H 1.08003 * 119.99855 * 119.99928 * 5 3 2 7 7 C 1.37877 * 120.00058 * 299.99988 * 5 3 2 8 8 N 1.31514 * 119.99756 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99853 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47058 * 90.00392 * 9 7 5 11 11 H 1.48502 * 109.47258 * 210.00056 * 9 7 5 12 12 H 1.48499 * 109.47623 * 330.00611 * 9 7 5 13 13 N 1.46896 * 109.47299 * 58.48119 * 3 2 1 14 14 C 1.46848 * 111.00180 * 53.88040 * 13 3 2 15 15 C 1.53062 * 109.52410 * 185.87671 * 14 13 3 16 16 C 1.53005 * 109.26929 * 300.95002 * 15 14 13 17 17 C 1.53070 * 109.55948 * 297.46061 * 16 15 14 18 18 C 1.53116 * 109.14746 * 183.10697 * 17 16 15 19 19 O 1.42907 * 109.39964 * 57.50244 * 18 17 16 20 20 C 1.42901 * 114.11957 * 298.79214 * 19 18 17 21 21 C 1.53059 * 109.58762 * 177.62438 * 16 15 14 22 22 H 1.08999 * 109.52384 * 56.94389 * 21 16 15 23 23 C 1.52995 * 109.52531 * 296.75427 * 21 16 15 24 24 O 1.42905 * 109.47041 * 174.99931 * 23 21 16 25 25 C 1.42901 * 113.99682 * 180.02562 * 24 23 21 26 26 C 1.53016 * 109.34489 * 57.52081 * 16 15 14 27 27 C 1.46859 * 111.00140 * 178.11889 * 13 3 2 28 28 H 1.08999 * 109.47075 * 305.11783 * 1 2 3 29 29 H 1.08999 * 109.46971 * 65.11872 * 1 2 3 30 30 H 1.08996 * 109.47054 * 185.11589 * 1 2 3 31 31 H 1.08997 * 109.47254 * 240.00041 * 2 1 3 32 32 H 1.08999 * 109.47139 * 120.00290 * 2 1 3 33 33 H 0.97001 * 119.99886 * 180.02562 * 8 7 5 34 34 H 1.08993 * 109.46075 * 305.89460 * 14 13 3 35 35 H 1.09005 * 109.45950 * 65.85893 * 14 13 3 36 36 H 1.09006 * 109.50214 * 181.01842 * 15 14 13 37 37 H 1.08995 * 109.50303 * 60.89350 * 15 14 13 38 38 H 1.09000 * 109.52613 * 303.00889 * 17 16 15 39 39 H 1.08999 * 109.52666 * 63.14675 * 17 16 15 40 40 H 1.09002 * 109.48046 * 177.47557 * 18 17 16 41 41 H 1.08999 * 109.48856 * 297.51319 * 18 17 16 42 42 H 1.09008 * 109.47763 * 181.16575 * 20 19 18 43 43 H 1.08994 * 109.47978 * 301.18202 * 20 19 18 44 44 H 1.08995 * 109.47388 * 295.00336 * 23 21 16 45 45 H 1.09004 * 109.46894 * 55.00280 * 23 21 16 46 46 H 1.09000 * 109.47840 * 300.00109 * 25 24 23 47 47 H 1.09003 * 109.47531 * 60.00424 * 25 24 23 48 48 H 1.09006 * 109.46814 * 179.97438 * 25 24 23 49 49 H 1.08996 * 109.51083 * 182.52601 * 26 16 15 50 50 H 1.09011 * 109.50423 * 62.39736 * 26 16 15 51 51 H 1.08997 * 109.46223 * 294.12193 * 27 13 3 52 52 H 1.08997 * 109.46316 * 54.09906 * 27 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1297 1.4426 0.0272 5 6 1.5687 2.1419 -1.2489 6 1 0.9456 3.0208 -1.1731 7 6 1.9330 1.6599 -2.4882 8 7 2.6914 0.5894 -2.5804 9 14 1.3482 2.5265 -4.0362 10 1 2.3359 3.5650 -4.4253 11 1 1.2110 1.5374 -5.1354 12 1 0.0330 3.1661 -3.7788 13 7 1.5206 2.1455 1.1806 14 6 1.8378 1.4113 2.4122 15 6 1.1588 2.0923 3.6030 16 6 1.6492 3.5380 3.7049 17 6 3.1570 3.5503 3.9681 18 6 3.6241 4.9976 4.1456 19 8 2.8959 5.6035 5.2156 20 6 1.4844 5.6637 5.0009 21 6 0.9304 4.2436 4.8574 22 1 1.0972 3.6923 5.7828 23 6 -0.5694 4.3074 4.5620 24 8 -1.2536 4.8606 5.6881 25 6 -2.6683 4.9641 5.5153 26 6 1.3527 4.2675 2.3930 27 6 2.0264 3.5230 1.2377 28 1 -0.3633 0.5912 0.8406 29 1 -0.3633 0.4324 -0.9323 30 1 -0.3633 -1.0235 0.0916 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.9480 0.2504 -3.4523 34 1 1.4782 0.3860 2.3266 35 1 2.9173 1.4059 2.5639 36 1 1.4092 1.5576 4.5193 37 1 0.0783 2.0836 3.4595 38 1 3.3734 2.9840 4.8740 39 1 3.6780 3.0995 3.1235 40 1 4.6890 5.0101 4.3778 41 1 3.4462 5.5527 3.2246 42 1 1.0084 6.1557 5.8492 43 1 1.2789 6.2280 4.0913 44 1 -0.7413 4.9354 3.6879 45 1 -0.9443 3.3026 4.3668 46 1 -2.8841 5.6056 4.6608 47 1 -3.0865 3.9729 5.3401 48 1 -3.1137 5.3924 6.4133 49 1 1.7410 5.2846 2.4462 50 1 0.2755 4.2967 2.2281 51 1 3.1048 3.5076 1.3954 52 1 1.8038 4.0309 0.2994 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255169911.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:40:28 Heat of formation + Delta-G solvation = -112.219486 kcal Electronic energy + Delta-G solvation = -28894.663680 eV Core-core repulsion = 25279.169463 eV Total energy + Delta-G solvation = -3615.494217 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.92999 -39.23318 -38.55225 -36.79324 -34.54357 -33.22492 -32.46615 -31.75758 -29.82228 -28.20809 -27.77359 -26.43763 -25.42099 -24.94082 -23.56424 -23.18520 -22.05604 -20.67102 -18.92643 -18.12778 -17.67040 -17.40699 -17.28008 -16.90416 -16.28987 -16.07524 -15.87733 -15.75328 -15.45848 -15.22672 -15.04047 -14.58140 -14.47350 -14.31323 -13.84134 -13.69812 -13.51936 -13.12098 -12.93346 -12.83214 -12.78112 -12.75877 -12.51074 -12.35099 -12.28569 -12.10028 -12.05787 -11.85740 -11.71639 -11.54610 -11.47498 -11.25892 -10.99356 -10.85980 -10.69349 -10.54714 -10.42259 -10.15028 -8.76589 -8.05944 -6.15170 1.40991 1.43361 1.52336 2.44058 2.80182 2.98491 3.21972 3.37812 3.62530 3.67925 3.82784 3.91355 4.22569 4.23917 4.33023 4.36697 4.38864 4.41375 4.48284 4.53299 4.58572 4.60098 4.61975 4.65657 4.70799 4.75996 4.79412 4.87312 4.88697 4.89648 4.91817 4.93939 5.03049 5.07696 5.11132 5.14831 5.25807 5.30281 5.34548 5.39170 5.40909 5.54845 5.56817 5.76240 5.81080 5.92757 6.25117 6.26906 6.36491 6.51010 6.84491 6.98978 7.52679 8.99382 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.015948 B = 0.004092 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.261705 B = 6841.056890 C = 7192.322343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.109 4.109 3 C 0.224 3.776 4 H -0.048 1.048 5 C -0.498 4.498 6 H 0.055 0.945 7 C 0.014 3.986 8 N -0.921 5.921 9 Si 0.949 3.051 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.269 1.269 13 N -0.526 5.526 14 C 0.051 3.949 15 C -0.096 4.096 16 C -0.043 4.043 17 C -0.142 4.142 18 C 0.059 3.941 19 O -0.395 6.395 20 C 0.069 3.931 21 C -0.096 4.096 22 H 0.082 0.918 23 C 0.068 3.932 24 O -0.409 6.409 25 C 0.026 3.974 26 C -0.101 4.101 27 C 0.067 3.933 28 H 0.056 0.944 29 H 0.031 0.969 30 H 0.036 0.964 31 H 0.059 0.941 32 H 0.028 0.972 33 H 0.258 0.742 34 H 0.069 0.931 35 H 0.014 0.986 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.102 0.898 41 H 0.053 0.947 42 H 0.101 0.899 43 H 0.054 0.946 44 H 0.056 0.944 45 H 0.058 0.942 46 H 0.046 0.954 47 H 0.045 0.955 48 H 0.099 0.901 49 H 0.071 0.929 50 H 0.071 0.929 51 H 0.012 0.988 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.507 7.561 15.806 18.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.147 4.147 3 C 0.117 3.883 4 H -0.030 1.030 5 C -0.536 4.536 6 H 0.073 0.927 7 C -0.184 4.184 8 N -0.561 5.561 9 Si 0.775 3.225 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.193 1.193 13 N -0.251 5.251 14 C -0.077 4.077 15 C -0.133 4.133 16 C -0.044 4.044 17 C -0.180 4.180 18 C -0.017 4.017 19 O -0.314 6.314 20 C -0.007 4.007 21 C -0.115 4.115 22 H 0.100 0.900 23 C -0.008 4.008 24 O -0.329 6.329 25 C -0.070 4.070 26 C -0.139 4.139 27 C -0.061 4.061 28 H 0.075 0.925 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.047 0.953 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.032 0.968 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.120 0.880 41 H 0.071 0.929 42 H 0.119 0.881 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.076 0.924 46 H 0.065 0.935 47 H 0.064 0.936 48 H 0.117 0.883 49 H 0.090 0.910 50 H 0.089 0.911 51 H 0.030 0.970 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.758 7.599 15.956 18.587 hybrid contribution 0.708 -0.235 -1.810 1.958 sum -5.049 7.364 14.146 16.728 Atomic orbital electron populations 1.21314 0.95638 0.98589 1.00920 1.21471 0.96483 0.97561 0.99200 1.18993 0.89867 0.91644 0.87767 1.03034 1.21248 1.30226 1.11494 0.90651 0.92662 1.25579 0.95525 0.95699 1.01606 1.70013 1.37778 1.23867 1.24453 0.85697 0.78809 0.78252 0.79725 1.20582 1.21285 1.19329 1.61971 1.59441 1.01780 1.01859 1.22148 0.96827 0.98238 0.90500 1.21629 1.00678 0.94217 0.96812 1.20415 0.94728 0.95434 0.93784 1.22237 0.95494 0.98056 1.02210 1.22665 0.96696 0.92089 0.90271 1.87896 1.19059 1.80670 1.43808 1.22647 0.80562 0.95284 1.02225 1.21604 0.93263 0.97772 0.98851 0.89980 1.22618 0.91562 0.98247 0.88421 1.87809 1.20547 1.84321 1.40179 1.22900 0.80201 1.00982 1.02962 1.21749 1.01221 0.98074 0.92807 1.21906 0.95411 0.90339 0.98485 0.92460 0.95027 0.94514 0.92213 0.95326 0.93255 0.91291 0.96826 0.90589 0.90966 0.90760 0.91657 0.87958 0.92917 0.88128 0.92762 0.92631 0.92382 0.93524 0.93620 0.88277 0.91016 0.91069 0.96973 0.92353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.51 9.35 71.98 0.67 -3.84 16 2 C -0.11 -5.10 4.95 30.59 0.15 -4.95 16 3 C 0.22 10.98 1.76 44.17 0.08 11.06 16 4 H -0.05 -2.70 8.14 -2.38 -0.02 -2.72 16 5 C -0.50 -26.34 6.76 25.60 0.17 -26.17 16 6 H 0.06 2.94 6.84 -2.91 -0.02 2.92 16 7 C 0.01 0.76 5.30 84.65 0.45 1.21 16 8 N -0.92 -52.44 11.31 21.45 0.24 -52.20 16 9 Si 0.95 43.23 29.54 68.60 2.03 45.25 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 11 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 12 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 13 N -0.53 -20.84 3.63 -875.40 -3.18 -24.02 16 14 C 0.05 1.71 4.62 86.33 0.40 2.11 16 15 C -0.10 -2.50 4.67 30.62 0.14 -2.36 16 16 C -0.04 -1.06 0.29 -52.13 -0.02 -1.07 16 17 C -0.14 -3.48 4.33 30.66 0.13 -3.35 16 18 C 0.06 1.36 6.57 72.02 0.47 1.83 16 19 O -0.40 -9.80 10.76 -148.98 -1.60 -11.40 16 20 C 0.07 1.52 5.72 72.02 0.41 1.94 16 21 C -0.10 -2.10 1.90 -10.74 -0.02 -2.13 16 22 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 23 C 0.07 1.42 4.56 71.98 0.33 1.75 16 24 O -0.41 -8.68 10.30 -148.98 -1.54 -10.21 16 25 C 0.03 0.40 11.01 113.37 1.25 1.65 16 26 C -0.10 -2.78 3.96 30.62 0.12 -2.66 16 27 C 0.07 2.44 5.03 86.33 0.43 2.87 16 28 H 0.06 2.26 7.14 -2.39 -0.02 2.24 16 29 H 0.03 1.44 7.45 -2.39 -0.02 1.43 16 30 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.06 3.21 6.03 -2.39 -0.01 3.19 16 32 H 0.03 1.23 6.29 -2.39 -0.02 1.21 16 33 H 0.26 14.14 8.31 -92.71 -0.77 13.36 16 34 H 0.07 2.39 5.72 -2.39 -0.01 2.38 16 35 H 0.01 0.48 6.60 -2.38 -0.02 0.46 16 36 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 37 H 0.07 1.88 6.32 -2.39 -0.02 1.87 16 38 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.06 1.83 4.96 -2.39 -0.01 1.82 16 40 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.05 1.22 6.56 -2.39 -0.02 1.20 16 42 H 0.10 2.13 7.91 -2.38 -0.02 2.11 16 43 H 0.05 1.15 6.68 -2.39 -0.02 1.14 16 44 H 0.06 1.16 6.63 -2.39 -0.02 1.15 16 45 H 0.06 1.23 6.25 -2.38 -0.01 1.22 16 46 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 47 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 48 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 49 H 0.07 1.80 5.04 -2.39 -0.01 1.79 16 50 H 0.07 1.97 6.37 -2.38 -0.02 1.96 16 51 H 0.01 0.46 6.46 -2.39 -0.02 0.44 16 52 H 0.06 2.40 6.42 -2.39 -0.02 2.38 16 Total: -1.00 -59.36 364.90 2.03 -57.33 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 0.90 Total: 17.36 kcal Atomic # 6 Polarization: -27.29 SS G_CDS: 5.18 Total: -22.11 kcal Atomic # 7 Polarization: -73.29 SS G_CDS: -2.94 Total: -76.22 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -3.14 Total: -21.61 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Total: -59.36 2.03 -57.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255169911.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.886 kcal (2) G-P(sol) polarization free energy of solvation -59.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds