Wall clock time and date at job start Fri Apr 10 2020 22:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47294 * 2 1 4 4 H 1.08999 * 109.47402 * 54.99321 * 3 2 1 5 5 C 1.50702 * 109.47247 * 175.00025 * 3 2 1 6 6 H 1.08005 * 119.99738 * 120.00009 * 5 3 2 7 7 C 1.37872 * 119.99795 * 299.99340 * 5 3 2 8 8 N 1.31517 * 119.99855 * 180.02562 * 7 5 3 9 9 Si 1.86799 * 120.00213 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.46949 * 89.99797 * 9 7 5 11 11 H 1.48492 * 109.47223 * 209.99980 * 9 7 5 12 12 H 1.48505 * 109.46827 * 330.00021 * 9 7 5 13 13 N 1.46903 * 109.46736 * 294.99824 * 3 2 1 14 14 C 1.46850 * 111.00048 * 175.00218 * 13 3 2 15 15 C 1.53058 * 109.50276 * 185.90832 * 14 13 3 16 16 C 1.53020 * 109.27754 * 300.94015 * 15 14 13 17 17 C 1.53068 * 109.53645 * 297.41682 * 16 15 14 18 18 C 1.53118 * 109.15546 * 296.85272 * 17 16 15 19 19 O 1.42893 * 109.40175 * 302.52472 * 18 17 16 20 20 C 1.42901 * 114.13968 * 61.18643 * 19 18 17 21 21 C 1.53066 * 109.54820 * 177.62570 * 16 15 14 22 22 H 1.09002 * 109.52321 * 183.04454 * 21 16 15 23 23 C 1.52999 * 109.57811 * 303.20638 * 21 16 15 24 24 O 1.42895 * 109.47299 * 184.84355 * 23 21 16 25 25 C 1.42900 * 114.00256 * 180.02562 * 24 23 21 26 26 C 1.52999 * 109.35581 * 57.49768 * 16 15 14 27 27 C 1.46848 * 110.99833 * 299.24612 * 13 3 2 28 28 H 1.09001 * 109.47207 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47261 * 300.00434 * 1 2 3 30 30 H 1.09000 * 109.46657 * 60.00324 * 1 2 3 31 31 H 1.09000 * 109.47732 * 239.99318 * 2 1 3 32 32 H 1.09002 * 109.47315 * 119.99338 * 2 1 3 33 33 H 0.97001 * 119.99698 * 180.02562 * 8 7 5 34 34 H 1.08993 * 109.47036 * 65.89540 * 14 13 3 35 35 H 1.09006 * 109.46525 * 305.91610 * 14 13 3 36 36 H 1.09000 * 109.50475 * 180.99977 * 15 14 13 37 37 H 1.08998 * 109.53582 * 60.90399 * 15 14 13 38 38 H 1.08993 * 109.52864 * 176.95374 * 17 16 15 39 39 H 1.08996 * 109.52368 * 56.75455 * 17 16 15 40 40 H 1.08995 * 109.48246 * 182.54140 * 18 17 16 41 41 H 1.09001 * 109.49500 * 62.50811 * 18 17 16 42 42 H 1.09008 * 109.48366 * 178.83865 * 20 19 18 43 43 H 1.08996 * 109.49552 * 58.79990 * 20 19 18 44 44 H 1.08999 * 109.46727 * 304.84330 * 23 21 16 45 45 H 1.09001 * 109.47301 * 64.83822 * 23 21 16 46 46 H 1.09007 * 109.46701 * 299.99464 * 25 24 23 47 47 H 1.09004 * 109.47113 * 59.99375 * 25 24 23 48 48 H 1.08996 * 109.47366 * 179.97438 * 25 24 23 49 49 H 1.09003 * 109.50694 * 62.46648 * 26 16 15 50 50 H 1.09003 * 109.49712 * 182.57785 * 26 16 15 51 51 H 1.08998 * 109.46559 * 294.11941 * 27 13 3 52 52 H 1.09001 * 109.46433 * 54.09330 * 27 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5420 1.4443 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1433 0.8785 1.2280 8 7 5.4540 0.8805 1.3363 9 14 3.0964 0.1091 2.5702 10 1 2.8755 -1.3270 2.2635 11 1 3.7936 0.2351 3.8752 12 1 1.7876 0.8076 2.6386 13 7 1.6514 2.0992 -1.2553 14 6 2.0207 3.5204 -1.2420 15 6 1.4719 4.2028 -2.4973 16 6 2.0467 3.5160 -3.7380 17 6 3.5684 3.6807 -3.7554 18 6 3.9115 5.1687 -3.8680 19 8 3.3078 5.7072 -5.0459 20 6 1.8813 5.6246 -5.0615 21 6 1.4560 4.1551 -4.9972 22 1 1.8240 3.6305 -5.8789 23 6 -0.0706 4.0662 -4.9494 24 8 -0.6152 4.5606 -6.1745 25 6 -2.0424 4.5221 -6.2336 26 6 1.6929 2.0279 -3.7036 27 6 2.2349 1.4091 -2.4128 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 5.8770 0.4821 2.1130 34 1 3.1065 3.6135 -1.2233 35 1 1.6002 3.9968 -0.3563 36 1 1.7611 5.2537 -2.4963 37 1 0.3847 4.1246 -2.5089 38 1 3.9830 3.1457 -4.6097 39 1 3.9889 3.2787 -2.8337 40 1 4.9932 5.2889 -3.9263 41 1 3.5337 5.6964 -2.9922 42 1 1.5012 6.0732 -5.9794 43 1 1.4766 6.1581 -4.2015 44 1 -0.3699 3.0271 -4.8119 45 1 -0.4436 4.6647 -4.1182 46 1 -2.3830 3.4926 -6.1226 47 1 -2.4560 5.1304 -5.4291 48 1 -2.3770 4.9143 -7.1939 49 1 0.6097 1.9104 -3.7366 50 1 2.1400 1.5276 -4.5627 51 1 3.3197 1.5121 -2.3882 52 1 1.9697 0.3524 -2.3773 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255169912.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:40:32 Heat of formation + Delta-G solvation = -92.008052 kcal Electronic energy + Delta-G solvation = -29033.764758 eV Core-core repulsion = 25419.146974 eV Total energy + Delta-G solvation = -3614.617784 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.77417 -38.00866 -37.62651 -35.44584 -32.82868 -32.00262 -31.35291 -30.45865 -28.72948 -27.26881 -26.48901 -25.56358 -23.97186 -23.10749 -22.17299 -21.99805 -20.89169 -19.29452 -17.83670 -16.71062 -16.59734 -16.45546 -16.08776 -15.52629 -15.38163 -15.02152 -14.60844 -14.28162 -14.23121 -13.99726 -13.49320 -13.32170 -13.25792 -12.90510 -12.71599 -12.36156 -12.08040 -11.87474 -11.84252 -11.76736 -11.56347 -11.46899 -11.28819 -11.18331 -11.01197 -10.81975 -10.66932 -10.34795 -10.24807 -10.18490 -9.86535 -9.70371 -9.68535 -9.62547 -9.52937 -9.22241 -9.03384 -8.59377 -7.13522 -6.15105 -4.15625 3.22794 3.34319 3.35962 3.63281 4.01292 4.34329 4.66882 4.70773 4.90531 4.93043 4.99601 5.14610 5.16863 5.17961 5.25939 5.37635 5.40593 5.46120 5.49684 5.50509 5.57021 5.70680 5.75814 5.82113 5.88268 5.95096 5.99070 6.00107 6.01414 6.07725 6.12707 6.18459 6.25482 6.32721 6.39118 6.43100 6.51624 6.58949 6.65721 6.71044 6.79864 6.87846 6.92612 7.04750 7.08038 7.23005 7.32595 7.54556 8.09036 8.15963 8.41776 8.86540 9.48885 10.97579 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.018231 B = 0.004438 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.453537 B = 6307.382748 C = 7367.458650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.123 4.123 3 C 0.181 3.819 4 H 0.037 0.963 5 C -0.543 4.543 6 H 0.076 0.924 7 C 0.074 3.926 8 N -0.898 5.898 9 Si 0.886 3.114 10 H -0.279 1.279 11 H -0.299 1.299 12 H -0.264 1.264 13 N -0.524 5.524 14 C 0.062 3.938 15 C -0.112 4.112 16 C -0.047 4.047 17 C -0.148 4.148 18 C 0.059 3.941 19 O -0.385 6.385 20 C 0.070 3.930 21 C -0.107 4.107 22 H 0.083 0.917 23 C 0.065 3.935 24 O -0.394 6.394 25 C 0.032 3.968 26 C -0.106 4.106 27 C 0.057 3.943 28 H 0.032 0.968 29 H 0.041 0.959 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.046 0.954 33 H 0.263 0.737 34 H 0.046 0.954 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.053 0.947 42 H 0.094 0.906 43 H 0.049 0.951 44 H 0.058 0.942 45 H 0.054 0.946 46 H 0.040 0.960 47 H 0.039 0.961 48 H 0.083 0.917 49 H 0.064 0.936 50 H 0.058 0.942 51 H 0.046 0.954 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.268 6.420 -11.628 17.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.160 4.160 3 C 0.073 3.927 4 H 0.055 0.945 5 C -0.582 4.582 6 H 0.094 0.906 7 C -0.128 4.128 8 N -0.535 5.535 9 Si 0.717 3.283 10 H -0.206 1.206 11 H -0.227 1.227 12 H -0.189 1.189 13 N -0.248 5.248 14 C -0.066 4.066 15 C -0.150 4.150 16 C -0.047 4.047 17 C -0.185 4.185 18 C -0.018 4.018 19 O -0.304 6.304 20 C -0.007 4.007 21 C -0.126 4.126 22 H 0.102 0.898 23 C -0.011 4.011 24 O -0.313 6.313 25 C -0.064 4.064 26 C -0.144 4.144 27 C -0.071 4.071 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.071 0.929 42 H 0.112 0.888 43 H 0.067 0.933 44 H 0.076 0.924 45 H 0.072 0.928 46 H 0.059 0.941 47 H 0.058 0.942 48 H 0.101 0.899 49 H 0.083 0.917 50 H 0.076 0.924 51 H 0.065 0.935 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.403 6.495 -11.848 17.680 hybrid contribution 0.134 -0.830 1.410 1.641 sum -11.269 5.665 -10.438 16.372 Atomic orbital electron populations 1.21730 0.97438 0.99284 1.01590 1.21960 0.93991 0.99450 1.00637 1.19700 0.94499 0.90417 0.88044 0.94493 1.21605 0.90617 1.38944 1.06996 0.90638 1.24976 0.94688 0.95339 0.97842 1.69914 1.08823 1.45059 1.29732 0.86866 0.80706 0.79824 0.80903 1.20604 1.22673 1.18919 1.62301 1.58013 1.01290 1.03183 1.21880 0.99134 0.89712 0.95917 1.21838 1.00537 0.98271 0.94332 1.20454 0.94873 0.96036 0.93338 1.22316 0.95431 0.97004 1.03783 1.22641 0.98114 0.93353 0.87664 1.87898 1.19499 1.81639 1.41381 1.22569 0.81210 0.94846 1.02030 1.21751 0.93372 0.97969 0.99466 0.89833 1.22697 0.93703 0.98711 0.86018 1.87846 1.20082 1.85357 1.38015 1.22706 0.81359 1.00378 1.01985 1.21728 1.00997 0.93675 0.98003 1.21978 0.98056 0.97878 0.89196 0.94881 0.93998 0.92003 0.92203 0.93589 0.92685 0.93603 0.91967 0.92258 0.91596 0.91406 0.89206 0.89136 0.92886 0.88794 0.93303 0.92379 0.92823 0.94139 0.94188 0.89883 0.91727 0.92364 0.93541 0.91298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.80 37.16 0.36 -2.15 16 2 C -0.12 -2.56 4.72 -26.73 -0.13 -2.69 16 3 C 0.18 4.01 1.34 -68.86 -0.09 3.92 16 4 H 0.04 0.88 7.14 -51.93 -0.37 0.50 16 5 C -0.54 -14.17 7.77 -34.44 -0.27 -14.44 16 6 H 0.08 2.14 6.09 -52.48 -0.32 1.82 16 7 C 0.07 2.05 5.45 -17.82 -0.10 1.96 16 8 N -0.90 -26.57 13.96 55.43 0.77 -25.79 16 9 Si 0.89 21.46 24.41 -169.99 -4.15 17.31 16 10 H -0.28 -6.64 6.83 56.52 0.39 -6.25 16 11 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 12 H -0.26 -6.15 6.53 56.52 0.37 -5.78 16 13 N -0.52 -9.81 4.09 -228.04 -0.93 -10.74 16 14 C 0.06 1.09 4.87 -3.82 -0.02 1.07 16 15 C -0.11 -1.57 3.96 -26.69 -0.11 -1.67 16 16 C -0.05 -0.63 0.29 -154.43 -0.04 -0.67 16 17 C -0.15 -2.12 4.33 -26.63 -0.12 -2.24 16 18 C 0.06 0.79 6.57 37.22 0.24 1.04 16 19 O -0.39 -5.48 10.76 -35.23 -0.38 -5.86 16 20 C 0.07 0.87 5.72 37.22 0.21 1.09 16 21 C -0.11 -1.32 1.90 -90.53 -0.17 -1.49 16 22 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 23 C 0.06 0.74 4.57 37.16 0.17 0.91 16 24 O -0.39 -4.58 10.30 -35.23 -0.36 -4.94 16 25 C 0.03 0.28 11.01 101.05 1.11 1.39 16 26 C -0.11 -1.52 4.67 -26.70 -0.12 -1.64 16 27 C 0.06 1.01 4.56 -3.82 -0.02 0.99 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 1.04 7.75 -51.93 -0.40 0.63 16 31 H 0.06 1.23 6.05 -51.93 -0.31 0.92 16 32 H 0.05 1.04 3.21 -51.93 -0.17 0.87 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.05 0.90 5.28 -51.93 -0.27 0.63 16 35 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 36 H 0.06 0.78 5.04 -51.93 -0.26 0.52 16 37 H 0.07 0.89 6.37 -51.93 -0.33 0.56 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.09 1.50 4.97 -51.93 -0.26 1.25 16 40 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 41 H 0.05 0.70 6.56 -51.93 -0.34 0.36 16 42 H 0.09 1.13 7.90 -51.92 -0.41 0.72 16 43 H 0.05 0.58 6.67 -51.93 -0.35 0.23 16 44 H 0.06 0.66 6.26 -51.93 -0.33 0.34 16 45 H 0.05 0.59 6.62 -51.93 -0.34 0.25 16 46 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 48 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.06 0.89 6.32 -51.93 -0.33 0.56 16 50 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 51 H 0.05 0.94 5.09 -51.93 -0.26 0.67 16 52 H 0.07 1.25 5.93 -51.93 -0.31 0.94 16 LS Contribution 358.43 15.07 5.40 5.40 Total: -1.00 -28.54 358.43 -7.50 -36.04 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -8.77 Total: 3.21 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: 0.92 Total: -14.64 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: -0.16 Total: -36.53 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: -0.74 Total: -10.80 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.15 Total: 17.31 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.54 -7.50 -36.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255169912.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.964 kcal (2) G-P(sol) polarization free energy of solvation -28.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds