Wall clock time and date at job start Fri Apr 10 2020 22:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47383 * 2 1 4 4 H 1.09004 * 109.46666 * 182.39595 * 3 2 1 5 5 C 1.50701 * 109.46885 * 62.39862 * 3 2 1 6 6 H 1.07992 * 120.00041 * 244.17182 * 5 3 2 7 7 C 1.37887 * 119.99978 * 64.17149 * 5 3 2 8 8 N 1.31514 * 119.99942 * 194.50439 * 7 5 3 9 9 Si 1.86798 * 119.99907 * 14.50009 * 7 5 3 10 10 H 1.48509 * 109.46945 * 92.22220 * 9 7 5 11 11 H 1.48498 * 109.47391 * 212.21795 * 9 7 5 12 12 H 1.48503 * 109.47352 * 332.22340 * 9 7 5 13 13 N 1.46892 * 109.47376 * 302.39851 * 3 2 1 14 14 C 1.46845 * 111.00115 * 176.22174 * 13 3 2 15 15 C 1.53058 * 109.51308 * 185.89338 * 14 13 3 16 16 C 1.53000 * 109.28074 * 300.97012 * 15 14 13 17 17 C 1.53073 * 109.55682 * 297.43000 * 16 15 14 18 18 C 1.53108 * 109.15768 * 183.09192 * 17 16 15 19 19 O 1.42905 * 109.39687 * 57.48735 * 18 17 16 20 20 C 1.42903 * 114.13588 * 298.80668 * 19 18 17 21 21 C 1.53066 * 109.60212 * 177.59965 * 16 15 14 22 22 H 1.09002 * 109.57167 * 56.93395 * 21 16 15 23 23 C 1.52996 * 109.52372 * 296.77651 * 21 16 15 24 24 O 1.42898 * 109.47228 * 175.32014 * 23 21 16 25 25 C 1.42905 * 114.00198 * 179.97438 * 24 23 21 26 26 C 1.53014 * 109.35895 * 57.49153 * 16 15 14 27 27 C 1.46847 * 111.00076 * 300.48085 * 13 3 2 28 28 H 1.09001 * 109.47060 * 295.04774 * 1 2 3 29 29 H 1.09000 * 109.47250 * 55.04176 * 1 2 3 30 30 H 1.08998 * 109.47271 * 175.04621 * 1 2 3 31 31 H 1.09000 * 109.47094 * 240.00343 * 2 1 3 32 32 H 1.09001 * 109.47201 * 120.00360 * 2 1 3 33 33 H 0.96999 * 120.00033 * 180.02562 * 8 7 5 34 34 H 1.09003 * 109.45930 * 65.88836 * 14 13 3 35 35 H 1.08997 * 109.46668 * 305.90912 * 14 13 3 36 36 H 1.08998 * 109.50356 * 181.02652 * 15 14 13 37 37 H 1.09003 * 109.50611 * 60.90756 * 15 14 13 38 38 H 1.09010 * 109.51966 * 63.19482 * 17 16 15 39 39 H 1.08997 * 109.58172 * 303.03722 * 17 16 15 40 40 H 1.09000 * 109.48822 * 297.50534 * 18 17 16 41 41 H 1.09001 * 109.48415 * 177.45664 * 18 17 16 42 42 H 1.08996 * 109.48602 * 301.20557 * 20 19 18 43 43 H 1.09002 * 109.49501 * 181.16844 * 20 19 18 44 44 H 1.08999 * 109.46966 * 295.31900 * 23 21 16 45 45 H 1.08999 * 109.47422 * 55.31885 * 23 21 16 46 46 H 1.08994 * 109.46697 * 300.00056 * 25 24 23 47 47 H 1.08999 * 109.46835 * 59.99994 * 25 24 23 48 48 H 1.08998 * 109.46775 * 179.97438 * 25 24 23 49 49 H 1.09003 * 109.49914 * 62.43911 * 26 16 15 50 50 H 1.08997 * 109.50492 * 182.55355 * 26 16 15 51 51 H 1.08997 * 109.46326 * 294.11086 * 27 13 3 52 52 H 1.09006 * 109.46632 * 54.08410 * 27 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1292 1.4427 -0.0430 5 6 1.5869 2.1355 1.2591 6 1 0.9085 2.9737 1.1999 7 6 2.0383 1.6993 2.4868 8 7 1.4403 2.0999 3.5876 9 14 3.4991 0.5394 2.5865 10 1 4.7481 1.3283 2.7383 11 1 3.3373 -0.3611 3.7562 12 1 3.5734 -0.2711 1.3444 13 7 1.5037 2.1516 -1.1693 14 6 1.9000 3.5655 -1.1548 15 6 1.2057 4.3028 -2.3024 16 6 1.5989 3.6540 -3.6310 17 6 3.1084 3.7947 -3.8430 18 6 3.4804 3.2117 -5.2090 19 8 2.7385 3.8828 -6.2294 20 6 1.3214 3.7434 -6.1091 21 6 0.8619 4.3477 -4.7793 22 1 1.0873 5.4141 -4.7665 23 6 -0.6455 4.1418 -4.6177 24 8 -1.3379 4.8795 -5.6268 25 6 -2.7601 4.7545 -5.5655 26 6 1.2223 2.1712 -3.6025 27 6 1.9164 1.4963 -2.4170 28 1 -0.3633 0.4351 0.9310 29 1 -0.3634 0.5888 -0.8422 30 1 -0.3634 -1.0238 -0.0887 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.7581 1.7934 4.4512 34 1 2.9806 3.6410 -1.2758 35 1 1.6085 4.0147 -0.2054 36 1 1.5140 5.3483 -2.3026 37 1 0.1250 4.2415 -2.1734 38 1 3.6383 3.2531 -3.0593 39 1 3.3854 4.8483 -3.8088 40 1 3.2435 2.1480 -5.2271 41 1 4.5473 3.3498 -5.3849 42 1 1.0562 2.6867 -6.1391 43 1 0.8334 4.2643 -6.9329 44 1 -0.8801 3.0820 -4.7171 45 1 -0.9567 4.4921 -3.6336 46 1 -3.0382 3.7074 -5.6847 47 1 -3.1155 5.1173 -4.6010 48 1 -3.2114 5.3439 -6.3636 49 1 0.1420 2.0722 -3.4963 50 1 1.5423 1.6965 -4.5300 51 1 2.9969 1.5818 -2.5320 52 1 1.6369 0.4432 -2.3840 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255169913.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:40:35 Heat of formation + Delta-G solvation = -90.025940 kcal Electronic energy + Delta-G solvation = -28939.342223 eV Core-core repulsion = 25324.810390 eV Total energy + Delta-G solvation = -3614.531833 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.86818 -38.00816 -37.66336 -35.49746 -32.93979 -31.92104 -31.36357 -30.47335 -28.71790 -27.24723 -26.40025 -25.58753 -24.22667 -22.94879 -22.64861 -22.08348 -20.61738 -19.26200 -17.82127 -16.67432 -16.56448 -16.45383 -16.25387 -15.49997 -15.43091 -15.04738 -14.61168 -14.33005 -14.26172 -13.94154 -13.57779 -13.42927 -13.22841 -12.95699 -12.79475 -12.57375 -12.21474 -11.95627 -11.86117 -11.76702 -11.50052 -11.46489 -11.18278 -11.10813 -10.93906 -10.78339 -10.55382 -10.38500 -10.32969 -10.13846 -10.08704 -9.89889 -9.71770 -9.68855 -9.30602 -9.19823 -8.89968 -8.44958 -7.27279 -6.10914 -4.04109 3.24550 3.34286 3.36855 3.62399 3.88477 4.39752 4.56530 4.64409 4.80625 4.83189 4.89540 5.11032 5.18234 5.20219 5.21496 5.26064 5.33574 5.37559 5.42490 5.51179 5.52566 5.57300 5.67509 5.70405 5.72269 5.82563 5.91646 5.99918 6.00356 6.06290 6.10843 6.13219 6.23954 6.27352 6.35731 6.38333 6.42876 6.51490 6.68329 6.74983 6.80087 6.99006 7.04863 7.11473 7.18722 7.20023 7.47298 7.68176 7.97760 8.11694 8.65146 8.99142 9.55010 11.01698 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.017972 B = 0.004199 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.577662 B = 6667.304783 C = 7304.186996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.115 4.115 3 C 0.191 3.809 4 H -0.010 1.010 5 C -0.503 4.503 6 H 0.081 0.919 7 C 0.077 3.923 8 N -0.892 5.892 9 Si 0.858 3.142 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.254 1.254 13 N -0.517 5.517 14 C 0.063 3.937 15 C -0.107 4.107 16 C -0.049 4.049 17 C -0.147 4.147 18 C 0.059 3.941 19 O -0.384 6.384 20 C 0.070 3.930 21 C -0.106 4.106 22 H 0.084 0.916 23 C 0.064 3.936 24 O -0.395 6.395 25 C 0.032 3.968 26 C -0.110 4.110 27 C 0.049 3.951 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.018 0.982 31 H 0.027 0.973 32 H 0.053 0.947 33 H 0.263 0.737 34 H 0.020 0.980 35 H 0.092 0.908 36 H 0.059 0.941 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.052 0.948 41 H 0.089 0.911 42 H 0.049 0.951 43 H 0.096 0.904 44 H 0.054 0.946 45 H 0.061 0.939 46 H 0.040 0.960 47 H 0.042 0.958 48 H 0.083 0.917 49 H 0.071 0.929 50 H 0.058 0.942 51 H 0.022 0.978 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.964 2.031 -17.913 18.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.154 4.154 3 C 0.083 3.917 4 H 0.007 0.993 5 C -0.541 4.541 6 H 0.099 0.901 7 C -0.126 4.126 8 N -0.530 5.530 9 Si 0.685 3.315 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.179 1.179 13 N -0.242 5.242 14 C -0.064 4.064 15 C -0.144 4.144 16 C -0.050 4.050 17 C -0.184 4.184 18 C -0.018 4.018 19 O -0.303 6.303 20 C -0.007 4.007 21 C -0.125 4.125 22 H 0.103 0.897 23 C -0.012 4.012 24 O -0.314 6.314 25 C -0.065 4.065 26 C -0.148 4.148 27 C -0.080 4.080 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.037 0.963 31 H 0.045 0.955 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.038 0.962 35 H 0.110 0.890 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.070 0.930 41 H 0.107 0.893 42 H 0.067 0.933 43 H 0.114 0.886 44 H 0.072 0.928 45 H 0.079 0.921 46 H 0.058 0.942 47 H 0.060 0.940 48 H 0.101 0.899 49 H 0.090 0.910 50 H 0.077 0.923 51 H 0.040 0.960 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.293 2.205 -17.954 18.234 hybrid contribution 1.410 -0.956 0.754 1.863 sum -0.884 1.249 -17.200 17.268 Atomic orbital electron populations 1.21469 0.95707 0.97843 1.03167 1.21926 0.97071 0.97770 0.98590 1.19590 0.91778 0.91015 0.89283 0.99298 1.20842 1.28665 1.16711 0.87911 0.90128 1.24841 0.96306 0.95714 0.95707 1.69954 1.39291 1.45840 0.97906 0.87324 0.84212 0.81754 0.78201 1.20916 1.21399 1.17882 1.61818 1.59857 1.01430 1.01068 1.21994 0.96080 0.89502 0.98872 1.21733 1.01392 0.98194 0.93111 1.20495 0.94302 0.95696 0.94471 1.22300 0.96027 1.02250 0.97825 1.22625 0.96020 0.95770 0.87364 1.87906 1.17638 1.75014 1.49754 1.22598 0.81104 0.99746 0.97241 1.21736 0.93089 1.01723 0.95937 0.89719 1.22699 0.91772 0.95431 0.91341 1.87833 1.18200 1.71459 1.53875 1.22714 0.81334 1.00743 1.01661 1.21790 1.01424 0.93970 0.97587 1.22128 0.96371 0.98764 0.90691 0.91623 0.92624 0.96251 0.95482 0.92849 0.92755 0.96150 0.88956 0.92202 0.91147 0.90103 0.91174 0.93022 0.89304 0.93260 0.88617 0.92812 0.92123 0.94151 0.93985 0.89874 0.91021 0.92310 0.96027 0.90978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.51 9.50 37.16 0.35 -2.15 16 2 C -0.12 -2.44 4.55 -26.73 -0.12 -2.56 16 3 C 0.19 4.26 1.31 -68.87 -0.09 4.17 16 4 H -0.01 -0.24 6.87 -51.93 -0.36 -0.60 16 5 C -0.50 -13.20 7.14 -34.44 -0.25 -13.44 16 6 H 0.08 2.32 6.85 -52.49 -0.36 1.96 16 7 C 0.08 2.10 5.35 -17.82 -0.10 2.01 16 8 N -0.89 -26.24 13.96 55.43 0.77 -25.47 16 9 Si 0.86 20.69 25.80 -169.99 -4.39 16.30 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.25 -5.80 5.36 56.52 0.30 -5.50 16 13 N -0.52 -9.78 3.56 -228.06 -0.81 -10.59 16 14 C 0.06 1.14 4.97 -3.82 -0.02 1.12 16 15 C -0.11 -1.54 4.67 -26.70 -0.12 -1.66 16 16 C -0.05 -0.62 0.29 -154.43 -0.04 -0.67 16 17 C -0.15 -1.82 4.33 -26.64 -0.12 -1.93 16 18 C 0.06 0.68 6.57 37.21 0.24 0.92 16 19 O -0.38 -4.97 10.76 -35.23 -0.38 -5.34 16 20 C 0.07 0.81 5.72 37.22 0.21 1.02 16 21 C -0.11 -1.25 1.91 -90.53 -0.17 -1.43 16 22 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 23 C 0.06 0.73 4.57 37.16 0.17 0.90 16 24 O -0.39 -4.61 10.29 -35.23 -0.36 -4.97 16 25 C 0.03 0.28 11.01 101.05 1.11 1.40 16 26 C -0.11 -1.44 3.96 -26.70 -0.11 -1.55 16 27 C 0.05 0.78 4.96 -3.83 -0.02 0.76 16 28 H 0.06 1.50 7.47 -51.93 -0.39 1.11 16 29 H 0.05 1.08 7.38 -51.93 -0.38 0.69 16 30 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.03 0.51 6.40 -51.93 -0.33 0.18 16 32 H 0.05 1.20 4.73 -51.93 -0.25 0.96 16 33 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.02 0.37 6.60 -51.93 -0.34 0.02 16 35 H 0.09 1.91 6.13 -51.93 -0.32 1.59 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 1.04 6.32 -51.93 -0.33 0.71 16 38 H 0.08 1.09 4.97 -51.92 -0.26 0.83 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.05 0.58 6.56 -51.93 -0.34 0.24 16 41 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.05 0.54 6.67 -51.93 -0.35 0.20 16 43 H 0.10 1.09 7.90 -51.93 -0.41 0.68 16 44 H 0.05 0.60 6.61 -51.93 -0.34 0.25 16 45 H 0.06 0.72 6.26 -51.93 -0.33 0.40 16 46 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 48 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.07 0.96 6.36 -51.93 -0.33 0.63 16 50 H 0.06 0.70 5.04 -51.93 -0.26 0.44 16 51 H 0.02 0.35 6.46 -51.93 -0.34 0.01 16 52 H 0.07 1.16 6.04 -51.93 -0.31 0.85 16 LS Contribution 359.82 15.07 5.42 5.42 Total: -1.00 -28.53 359.82 -7.74 -36.27 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -8.93 Total: 1.49 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: 0.94 Total: -13.10 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: -0.04 Total: -36.06 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: -0.74 Total: -10.32 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.39 Total: 16.30 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.53 -7.74 -36.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255169913.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.755 kcal (2) G-P(sol) polarization free energy of solvation -28.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds