Wall clock time and date at job start Fri Apr 10 2020 22:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47383 * 2 1 4 4 H 1.09004 * 109.46666 * 182.39595 * 3 2 1 5 5 C 1.50701 * 109.46885 * 62.39862 * 3 2 1 6 6 H 1.07992 * 120.00041 * 244.17182 * 5 3 2 7 7 C 1.37887 * 119.99978 * 64.17149 * 5 3 2 8 8 N 1.31514 * 119.99942 * 194.50439 * 7 5 3 9 9 Si 1.86798 * 119.99907 * 14.50009 * 7 5 3 10 10 H 1.48509 * 109.46945 * 92.22220 * 9 7 5 11 11 H 1.48498 * 109.47391 * 212.21795 * 9 7 5 12 12 H 1.48503 * 109.47352 * 332.22340 * 9 7 5 13 13 N 1.46892 * 109.47376 * 302.39851 * 3 2 1 14 14 C 1.46845 * 111.00115 * 176.22174 * 13 3 2 15 15 C 1.53058 * 109.51308 * 185.89338 * 14 13 3 16 16 C 1.53000 * 109.28074 * 300.97012 * 15 14 13 17 17 C 1.53073 * 109.55682 * 297.43000 * 16 15 14 18 18 C 1.53108 * 109.15768 * 183.09192 * 17 16 15 19 19 O 1.42905 * 109.39687 * 57.48735 * 18 17 16 20 20 C 1.42903 * 114.13588 * 298.80668 * 19 18 17 21 21 C 1.53066 * 109.60212 * 177.59965 * 16 15 14 22 22 H 1.09002 * 109.57167 * 56.93395 * 21 16 15 23 23 C 1.52996 * 109.52372 * 296.77651 * 21 16 15 24 24 O 1.42898 * 109.47228 * 175.32014 * 23 21 16 25 25 C 1.42905 * 114.00198 * 179.97438 * 24 23 21 26 26 C 1.53014 * 109.35895 * 57.49153 * 16 15 14 27 27 C 1.46847 * 111.00076 * 300.48085 * 13 3 2 28 28 H 1.09001 * 109.47060 * 295.04774 * 1 2 3 29 29 H 1.09000 * 109.47250 * 55.04176 * 1 2 3 30 30 H 1.08998 * 109.47271 * 175.04621 * 1 2 3 31 31 H 1.09000 * 109.47094 * 240.00343 * 2 1 3 32 32 H 1.09001 * 109.47201 * 120.00360 * 2 1 3 33 33 H 0.96999 * 120.00033 * 180.02562 * 8 7 5 34 34 H 1.09003 * 109.45930 * 65.88836 * 14 13 3 35 35 H 1.08997 * 109.46668 * 305.90912 * 14 13 3 36 36 H 1.08998 * 109.50356 * 181.02652 * 15 14 13 37 37 H 1.09003 * 109.50611 * 60.90756 * 15 14 13 38 38 H 1.09010 * 109.51966 * 63.19482 * 17 16 15 39 39 H 1.08997 * 109.58172 * 303.03722 * 17 16 15 40 40 H 1.09000 * 109.48822 * 297.50534 * 18 17 16 41 41 H 1.09001 * 109.48415 * 177.45664 * 18 17 16 42 42 H 1.08996 * 109.48602 * 301.20557 * 20 19 18 43 43 H 1.09002 * 109.49501 * 181.16844 * 20 19 18 44 44 H 1.08999 * 109.46966 * 295.31900 * 23 21 16 45 45 H 1.08999 * 109.47422 * 55.31885 * 23 21 16 46 46 H 1.08994 * 109.46697 * 300.00056 * 25 24 23 47 47 H 1.08999 * 109.46835 * 59.99994 * 25 24 23 48 48 H 1.08998 * 109.46775 * 179.97438 * 25 24 23 49 49 H 1.09003 * 109.49914 * 62.43911 * 26 16 15 50 50 H 1.08997 * 109.50492 * 182.55355 * 26 16 15 51 51 H 1.08997 * 109.46326 * 294.11086 * 27 13 3 52 52 H 1.09006 * 109.46632 * 54.08410 * 27 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1292 1.4427 -0.0430 5 6 1.5869 2.1355 1.2591 6 1 0.9085 2.9737 1.1999 7 6 2.0383 1.6993 2.4868 8 7 1.4403 2.0999 3.5876 9 14 3.4991 0.5394 2.5865 10 1 4.7481 1.3283 2.7383 11 1 3.3373 -0.3611 3.7562 12 1 3.5734 -0.2711 1.3444 13 7 1.5037 2.1516 -1.1693 14 6 1.9000 3.5655 -1.1548 15 6 1.2057 4.3028 -2.3024 16 6 1.5989 3.6540 -3.6310 17 6 3.1084 3.7947 -3.8430 18 6 3.4804 3.2117 -5.2090 19 8 2.7385 3.8828 -6.2294 20 6 1.3214 3.7434 -6.1091 21 6 0.8619 4.3477 -4.7793 22 1 1.0873 5.4141 -4.7665 23 6 -0.6455 4.1418 -4.6177 24 8 -1.3379 4.8795 -5.6268 25 6 -2.7601 4.7545 -5.5655 26 6 1.2223 2.1712 -3.6025 27 6 1.9164 1.4963 -2.4170 28 1 -0.3633 0.4351 0.9310 29 1 -0.3634 0.5888 -0.8422 30 1 -0.3634 -1.0238 -0.0887 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.7581 1.7934 4.4512 34 1 2.9806 3.6410 -1.2758 35 1 1.6085 4.0147 -0.2054 36 1 1.5140 5.3483 -2.3026 37 1 0.1250 4.2415 -2.1734 38 1 3.6383 3.2531 -3.0593 39 1 3.3854 4.8483 -3.8088 40 1 3.2435 2.1480 -5.2271 41 1 4.5473 3.3498 -5.3849 42 1 1.0562 2.6867 -6.1391 43 1 0.8334 4.2643 -6.9329 44 1 -0.8801 3.0820 -4.7171 45 1 -0.9567 4.4921 -3.6336 46 1 -3.0382 3.7074 -5.6847 47 1 -3.1155 5.1173 -4.6010 48 1 -3.2114 5.3439 -6.3636 49 1 0.1420 2.0722 -3.4963 50 1 1.5423 1.6965 -4.5300 51 1 2.9969 1.5818 -2.5320 52 1 1.6369 0.4432 -2.3840 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255169913.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:40:34 Heat of formation + Delta-G solvation = -108.520259 kcal Electronic energy + Delta-G solvation = -28940.144197 eV Core-core repulsion = 25324.810390 eV Total energy + Delta-G solvation = -3615.333807 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.94463 -39.30314 -38.55866 -36.84286 -34.52248 -33.52788 -32.57109 -31.78691 -30.01779 -28.38769 -27.78698 -26.45796 -25.62104 -24.34796 -24.00019 -23.15599 -21.88583 -20.92361 -18.95708 -18.44037 -17.69466 -17.43742 -17.29039 -16.91889 -16.29319 -16.09778 -15.89420 -15.64996 -15.53808 -15.36780 -14.91134 -14.71085 -14.56736 -14.44093 -14.25189 -13.77456 -13.61464 -13.14510 -12.97930 -12.88894 -12.85156 -12.72889 -12.57303 -12.36757 -12.28787 -12.10200 -12.01419 -11.89762 -11.79077 -11.57564 -11.44424 -11.14270 -11.04591 -10.96541 -10.71182 -10.55907 -10.50807 -10.15225 -8.82184 -8.24732 -6.20437 1.31399 1.36672 1.43915 2.36527 2.79696 3.00226 3.08736 3.27232 3.62065 3.65575 3.82102 3.91250 4.21628 4.23042 4.30038 4.33123 4.38028 4.39991 4.43700 4.50797 4.52537 4.56040 4.58028 4.60500 4.63564 4.68673 4.74804 4.80480 4.81348 4.88143 4.90067 4.92775 5.03104 5.06311 5.09289 5.12209 5.14859 5.23396 5.28726 5.32172 5.37847 5.42141 5.46871 5.54196 5.75436 5.84037 6.12983 6.24328 6.29172 6.48892 6.81563 6.85179 7.42062 8.91617 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.017972 B = 0.004199 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.577662 B = 6667.304783 C = 7304.186996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.116 4.116 3 C 0.193 3.807 4 H -0.019 1.019 5 C -0.492 4.492 6 H 0.040 0.960 7 C 0.021 3.979 8 N -0.942 5.942 9 Si 0.915 3.085 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.228 1.228 13 N -0.523 5.523 14 C 0.068 3.932 15 C -0.097 4.097 16 C -0.043 4.043 17 C -0.144 4.144 18 C 0.060 3.940 19 O -0.397 6.397 20 C 0.072 3.928 21 C -0.098 4.098 22 H 0.075 0.925 23 C 0.068 3.932 24 O -0.410 6.410 25 C 0.026 3.974 26 C -0.102 4.102 27 C 0.048 3.952 28 H 0.026 0.974 29 H 0.061 0.939 30 H 0.047 0.953 31 H 0.058 0.942 32 H 0.039 0.961 33 H 0.262 0.738 34 H 0.019 0.981 35 H 0.052 0.948 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.061 0.939 41 H 0.102 0.898 42 H 0.061 0.939 43 H 0.098 0.902 44 H 0.062 0.938 45 H 0.051 0.949 46 H 0.050 0.950 47 H 0.041 0.959 48 H 0.099 0.901 49 H 0.072 0.928 50 H 0.082 0.918 51 H 0.026 0.974 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.438 0.476 -20.932 20.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.154 4.154 3 C 0.085 3.915 4 H -0.002 1.002 5 C -0.530 4.530 6 H 0.058 0.942 7 C -0.176 4.176 8 N -0.583 5.583 9 Si 0.740 3.260 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.151 1.151 13 N -0.248 5.248 14 C -0.060 4.060 15 C -0.135 4.135 16 C -0.043 4.043 17 C -0.182 4.182 18 C -0.016 4.016 19 O -0.316 6.316 20 C -0.005 4.005 21 C -0.117 4.117 22 H 0.093 0.907 23 C -0.009 4.009 24 O -0.329 6.329 25 C -0.070 4.070 26 C -0.140 4.140 27 C -0.080 4.080 28 H 0.045 0.955 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.037 0.963 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.120 0.880 42 H 0.079 0.921 43 H 0.116 0.884 44 H 0.080 0.920 45 H 0.069 0.931 46 H 0.068 0.932 47 H 0.060 0.940 48 H 0.117 0.883 49 H 0.091 0.909 50 H 0.100 0.900 51 H 0.044 0.956 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.771 0.648 -21.010 21.094 hybrid contribution 1.164 -0.366 1.666 2.065 sum -0.607 0.282 -19.344 19.356 Atomic orbital electron populations 1.21345 0.95121 0.99387 1.01323 1.21882 0.97585 0.96560 0.99372 1.19442 0.91180 0.91946 0.88920 1.00160 1.21020 1.26837 1.15242 0.89877 0.94208 1.25584 0.98858 0.97813 0.95371 1.70094 1.41356 1.48317 0.98535 0.86393 0.80488 0.80021 0.79092 1.21021 1.21579 1.15114 1.61757 1.59916 1.01654 1.01472 1.21881 0.96284 0.89391 0.98463 1.21632 1.00640 0.98297 0.92939 1.20410 0.94831 0.95556 0.93522 1.22259 0.95435 1.02107 0.98365 1.22690 0.96713 0.95989 0.86201 1.87902 1.18231 1.75383 1.50117 1.22624 0.80636 1.00388 0.96804 1.21621 0.93329 1.01016 0.95735 0.90693 1.22623 0.91471 0.95820 0.90962 1.87807 1.19651 1.71660 1.53789 1.22899 0.79982 1.01781 1.02376 1.21750 1.01211 0.93785 0.97224 1.22229 0.96995 0.98967 0.89787 0.95471 0.91971 0.93402 0.92332 0.94219 0.92913 0.96293 0.92939 0.91528 0.91615 0.91114 0.91470 0.92068 0.87978 0.92092 0.88365 0.92008 0.93081 0.93176 0.93985 0.88275 0.90933 0.90001 0.95605 0.90475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.45 9.50 71.98 0.68 -3.76 16 2 C -0.12 -4.67 4.55 30.59 0.14 -4.53 16 3 C 0.19 8.55 1.31 44.17 0.06 8.61 16 4 H -0.02 -0.87 6.87 -2.38 -0.02 -0.89 16 5 C -0.49 -26.69 7.14 25.60 0.18 -26.51 16 6 H 0.04 2.44 6.85 -2.91 -0.02 2.42 16 7 C 0.02 1.20 5.35 84.66 0.45 1.65 16 8 N -0.94 -57.81 13.96 21.45 0.30 -57.51 16 9 Si 0.91 42.96 25.80 68.60 1.77 44.73 16 10 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 11 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 12 H -0.23 -9.68 5.36 99.48 0.53 -9.14 16 13 N -0.52 -19.47 3.56 -875.45 -3.12 -22.59 16 14 C 0.07 2.48 4.97 86.33 0.43 2.91 16 15 C -0.10 -2.77 4.67 30.61 0.14 -2.63 16 16 C -0.04 -1.00 0.29 -52.13 -0.02 -1.02 16 17 C -0.14 -3.28 4.33 30.65 0.13 -3.15 16 18 C 0.06 1.20 6.57 72.02 0.47 1.68 16 19 O -0.40 -9.10 10.76 -148.98 -1.60 -10.71 16 20 C 0.07 1.46 5.72 72.02 0.41 1.87 16 21 C -0.10 -2.12 1.91 -10.73 -0.02 -2.14 16 22 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 23 C 0.07 1.42 4.57 71.98 0.33 1.74 16 24 O -0.41 -8.78 10.29 -148.98 -1.53 -10.31 16 25 C 0.03 0.41 11.01 113.37 1.25 1.65 16 26 C -0.10 -2.37 3.96 30.62 0.12 -2.25 16 27 C 0.05 1.39 4.96 86.33 0.43 1.82 16 28 H 0.03 1.23 7.47 -2.39 -0.02 1.21 16 29 H 0.06 2.30 7.38 -2.39 -0.02 2.28 16 30 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.06 2.01 6.40 -2.39 -0.02 1.99 16 32 H 0.04 1.70 4.73 -2.39 -0.01 1.69 16 33 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 34 H 0.02 0.69 6.60 -2.39 -0.02 0.67 16 35 H 0.05 2.31 6.13 -2.39 -0.01 2.30 16 36 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.07 1.94 6.32 -2.39 -0.02 1.93 16 38 H 0.07 1.77 4.97 -2.38 -0.01 1.76 16 39 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.06 1.12 6.56 -2.39 -0.02 1.10 16 41 H 0.10 1.77 8.14 -2.39 -0.02 1.76 16 42 H 0.06 1.10 6.67 -2.39 -0.02 1.09 16 43 H 0.10 1.97 7.90 -2.39 -0.02 1.95 16 44 H 0.06 1.20 6.61 -2.39 -0.02 1.18 16 45 H 0.05 1.16 6.26 -2.39 -0.01 1.15 16 46 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.04 0.65 8.14 -2.39 -0.02 0.64 16 48 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 49 H 0.07 1.71 6.36 -2.39 -0.02 1.70 16 50 H 0.08 1.58 5.04 -2.39 -0.01 1.57 16 51 H 0.03 0.75 6.46 -2.39 -0.02 0.73 16 52 H 0.08 2.19 6.04 -2.38 -0.01 2.17 16 Total: -1.00 -63.43 359.82 1.74 -61.69 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: 0.73 Total: 18.73 kcal Atomic # 6 Polarization: -29.24 SS G_CDS: 5.20 Total: -24.04 kcal Atomic # 7 Polarization: -77.28 SS G_CDS: -2.82 Total: -80.10 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: -3.14 Total: -21.02 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 1.77 Total: 44.73 kcal Total: -63.43 1.74 -61.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255169913.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.832 kcal (2) G-P(sol) polarization free energy of solvation -63.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds