Wall clock time and date at job start Fri Apr 10 2020 22:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47553 * 2 1 4 4 H 1.09003 * 109.47242 * 305.00338 * 3 2 1 5 5 C 1.50696 * 109.47299 * 184.99865 * 3 2 1 6 6 H 1.07997 * 120.00184 * 239.99834 * 5 3 2 7 7 C 1.37883 * 119.99937 * 60.00492 * 5 3 2 8 8 N 1.31511 * 119.99549 * 359.97438 * 7 5 3 9 9 Si 1.86790 * 119.99913 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47438 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47261 * 119.99951 * 9 7 5 12 12 H 1.48504 * 109.47201 * 239.99643 * 9 7 5 13 13 N 1.46904 * 109.46841 * 65.00000 * 3 2 1 14 14 C 1.46849 * 110.99939 * 190.00193 * 13 3 2 15 15 C 1.53062 * 109.52112 * 174.10828 * 14 13 3 16 16 C 1.53004 * 109.27087 * 59.05258 * 15 14 13 17 17 C 1.53076 * 109.56253 * 62.57920 * 16 15 14 18 18 C 1.53108 * 109.15828 * 176.84471 * 17 16 15 19 19 O 1.42898 * 109.40310 * 302.50658 * 18 17 16 20 20 C 1.42902 * 114.11697 * 61.22167 * 19 18 17 21 21 C 1.53059 * 109.57327 * 182.40820 * 16 15 14 22 22 H 1.08998 * 109.52524 * 303.09070 * 21 16 15 23 23 C 1.52998 * 109.52247 * 63.27434 * 21 16 15 24 24 O 1.42899 * 109.47273 * 185.00113 * 23 21 16 25 25 C 1.42901 * 113.99943 * 179.97438 * 24 23 21 26 26 C 1.53016 * 109.34916 * 302.49946 * 16 15 14 27 27 C 1.46855 * 111.00038 * 65.77457 * 13 3 2 28 28 H 1.09005 * 109.46560 * 299.99803 * 1 2 3 29 29 H 1.09001 * 109.46823 * 59.99763 * 1 2 3 30 30 H 1.08999 * 109.47404 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47290 * 239.99733 * 2 1 3 32 32 H 1.09003 * 109.47332 * 120.00167 * 2 1 3 33 33 H 0.97001 * 119.99474 * 180.02562 * 8 7 5 34 34 H 1.09003 * 109.46182 * 54.09385 * 14 13 3 35 35 H 1.08997 * 109.46365 * 294.12674 * 14 13 3 36 36 H 1.09000 * 109.50198 * 299.11503 * 15 14 13 37 37 H 1.08998 * 109.53883 * 179.01166 * 15 14 13 38 38 H 1.09000 * 109.52147 * 296.74913 * 17 16 15 39 39 H 1.08998 * 109.51919 * 56.93861 * 17 16 15 40 40 H 1.09007 * 109.48276 * 62.48662 * 18 17 16 41 41 H 1.09004 * 109.48328 * 182.51448 * 18 17 16 42 42 H 1.08997 * 109.48256 * 58.78316 * 20 19 18 43 43 H 1.08995 * 109.48302 * 178.81143 * 20 19 18 44 44 H 1.08998 * 109.47124 * 304.99976 * 23 21 16 45 45 H 1.09000 * 109.47428 * 65.00016 * 23 21 16 46 46 H 1.09004 * 109.47240 * 60.00257 * 25 24 23 47 47 H 1.09006 * 109.47350 * 179.97438 * 25 24 23 48 48 H 1.09001 * 109.47378 * 299.99733 * 25 24 23 49 49 H 1.09008 * 109.50408 * 177.45081 * 26 16 15 50 50 H 1.08993 * 109.50993 * 297.57643 * 26 16 15 51 51 H 1.08999 * 109.46518 * 305.91029 * 27 13 3 52 52 H 1.09003 * 109.46024 * 65.89500 * 27 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9816 -0.8418 5 6 3.5420 1.4442 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4062 0.3366 -2.1729 9 14 6.0049 0.8811 -1.3818 10 1 6.5987 1.5470 -0.1948 11 1 6.4970 -0.5176 -1.4630 12 1 6.3990 1.6166 -2.6102 13 7 1.6515 2.0992 1.2553 14 6 1.9125 3.5431 1.1965 15 6 1.3628 4.2140 2.4577 16 6 2.0346 3.6023 3.6887 17 6 3.5394 3.8788 3.6419 18 6 4.1906 3.3321 4.9153 19 8 3.5781 3.9337 6.0576 20 6 2.1796 3.6663 6.1790 21 6 1.4465 4.2260 4.9568 22 1 1.5706 5.3083 4.9217 23 6 -0.0416 3.8836 5.0522 24 8 -0.6154 4.5611 6.1719 25 6 -2.0104 4.3085 6.3516 26 6 1.7916 2.0916 3.7008 27 6 2.3290 1.4831 2.4033 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 3.8293 -0.0618 -2.9495 34 1 1.4238 3.9650 0.3182 35 1 2.9868 3.7156 1.1322 36 1 0.2859 4.0554 2.5142 37 1 1.5719 5.2831 2.4225 38 1 3.9732 3.3872 2.7711 39 1 3.7105 4.9533 3.5777 40 1 4.0557 2.2512 4.9574 41 1 5.2553 3.5656 4.9082 42 1 2.0191 2.5898 6.2377 43 1 1.7958 4.1408 7.0821 44 1 -0.5463 4.1990 4.1390 45 1 -0.1595 2.8075 5.1793 46 1 -2.1695 3.2411 6.5055 47 1 -2.3701 4.8581 7.2215 48 1 -2.5557 4.6331 5.4654 49 1 2.3070 1.6469 4.5522 50 1 0.7223 1.8955 3.7791 51 1 2.1429 0.4091 2.4014 52 1 3.4013 1.6661 2.3332 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255169914.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:40:39 Heat of formation + Delta-G solvation = -100.352314 kcal Electronic energy + Delta-G solvation = -29008.640991 eV Core-core repulsion = 25393.661373 eV Total energy + Delta-G solvation = -3614.979618 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.75023 -37.89259 -37.57078 -35.29302 -32.83700 -31.78866 -31.11361 -30.30440 -28.65015 -27.18198 -26.10063 -25.53738 -23.91569 -23.02529 -22.46600 -22.07090 -20.41721 -19.14955 -17.82802 -16.60342 -16.47733 -16.41336 -15.88738 -15.39549 -15.35911 -14.96269 -14.52243 -14.29997 -14.02647 -13.94778 -13.44416 -13.34849 -13.02174 -12.82909 -12.70898 -12.20931 -11.90122 -11.85428 -11.63756 -11.53903 -11.43934 -11.36254 -11.13556 -11.01411 -10.85882 -10.77939 -10.60736 -10.41789 -10.22990 -9.97062 -9.93896 -9.79947 -9.66166 -9.62922 -9.25394 -9.15321 -8.98629 -8.38295 -7.07951 -6.00850 -4.14484 3.22935 3.32227 3.34319 3.65091 3.99457 4.36827 4.69983 4.72306 4.92062 4.99979 5.05443 5.17252 5.20146 5.23682 5.26213 5.38793 5.43038 5.48044 5.50331 5.52526 5.58581 5.73689 5.78115 5.82785 5.91913 5.99818 6.02568 6.09051 6.15220 6.21987 6.31170 6.36413 6.41142 6.44887 6.52517 6.56695 6.64657 6.72273 6.77450 6.91382 7.06794 7.10382 7.17768 7.30313 7.35708 7.59754 7.74998 7.98324 8.14725 8.32787 8.47796 8.96290 9.53299 10.97906 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.016627 B = 0.004520 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.643839 B = 6192.800177 C = 7291.877942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.110 4.110 3 C 0.214 3.786 4 H 0.037 0.963 5 C -0.541 4.541 6 H 0.056 0.944 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.884 3.116 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.532 5.532 14 C 0.063 3.937 15 C -0.106 4.106 16 C -0.047 4.047 17 C -0.148 4.148 18 C 0.058 3.942 19 O -0.386 6.386 20 C 0.070 3.930 21 C -0.107 4.107 22 H 0.083 0.917 23 C 0.065 3.935 24 O -0.394 6.394 25 C 0.032 3.968 26 C -0.114 4.114 27 C 0.062 3.938 28 H 0.047 0.953 29 H 0.038 0.962 30 H 0.024 0.976 31 H 0.091 0.909 32 H 0.032 0.968 33 H 0.260 0.740 34 H 0.061 0.939 35 H 0.037 0.963 36 H 0.065 0.935 37 H 0.056 0.944 38 H 0.087 0.913 39 H 0.067 0.933 40 H 0.053 0.947 41 H 0.089 0.911 42 H 0.049 0.951 43 H 0.094 0.906 44 H 0.059 0.941 45 H 0.054 0.946 46 H 0.040 0.960 47 H 0.082 0.918 48 H 0.040 0.960 49 H 0.056 0.944 50 H 0.065 0.935 51 H 0.068 0.932 52 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.311 5.633 13.746 16.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.149 4.149 3 C 0.108 3.892 4 H 0.054 0.946 5 C -0.580 4.580 6 H 0.074 0.926 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.712 3.288 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.256 5.256 14 C -0.065 4.065 15 C -0.143 4.143 16 C -0.047 4.047 17 C -0.185 4.185 18 C -0.018 4.018 19 O -0.304 6.304 20 C -0.007 4.007 21 C -0.125 4.125 22 H 0.101 0.899 23 C -0.011 4.011 24 O -0.314 6.314 25 C -0.064 4.064 26 C -0.152 4.152 27 C -0.066 4.066 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.043 0.957 31 H 0.109 0.891 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.055 0.945 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.106 0.894 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.107 0.893 42 H 0.067 0.933 43 H 0.112 0.888 44 H 0.077 0.923 45 H 0.072 0.928 46 H 0.058 0.942 47 H 0.101 0.899 48 H 0.059 0.941 49 H 0.075 0.925 50 H 0.084 0.916 51 H 0.086 0.914 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -6.594 5.702 13.869 16.381 hybrid contribution 1.563 -0.290 -0.796 1.778 sum -5.031 5.413 13.073 15.017 Atomic orbital electron populations 1.21702 0.98942 0.98318 1.00501 1.21593 0.92172 0.99268 1.01832 1.19260 0.93020 0.91140 0.85806 0.94558 1.21764 0.92879 1.37963 1.05382 0.92565 1.24903 0.97675 0.95093 0.95725 1.69882 1.34643 1.38349 1.09438 0.86666 0.86379 0.77723 0.77983 1.19954 1.21029 1.21066 1.62375 1.57000 1.01551 1.04684 1.21849 0.98848 0.90049 0.95803 1.21715 1.00102 0.98322 0.94200 1.20453 0.94742 0.95977 0.93518 1.22311 0.95234 1.01879 0.99070 1.22636 0.97066 0.96949 0.85154 1.87896 1.21923 1.75050 1.45567 1.22575 0.80951 0.99369 0.97760 1.21747 0.92937 1.01781 0.96075 0.89889 1.22700 0.93563 0.96150 0.88731 1.87841 1.22945 1.71137 1.49429 1.22707 0.82180 1.00296 1.01251 1.21870 1.01348 0.93687 0.98247 1.21915 0.96807 0.98581 0.89340 0.93413 0.94313 0.95720 0.89058 0.94971 0.92982 0.92031 0.94462 0.91634 0.92509 0.89427 0.91464 0.92842 0.89283 0.93252 0.88780 0.92334 0.92770 0.94164 0.89900 0.94113 0.92515 0.91639 0.91365 0.94156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.80 37.16 0.36 -2.35 16 2 C -0.11 -2.52 5.16 -26.73 -0.14 -2.66 16 3 C 0.21 5.02 1.71 -68.87 -0.12 4.90 16 4 H 0.04 0.96 7.99 -51.93 -0.41 0.55 16 5 C -0.54 -13.80 7.23 -34.44 -0.25 -14.05 16 6 H 0.06 1.44 5.85 -52.49 -0.31 1.13 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.29 11.29 55.43 0.63 -23.66 16 9 Si 0.88 20.65 29.54 -169.99 -5.02 15.63 16 10 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 N -0.53 -10.39 4.06 -228.04 -0.92 -11.32 16 14 C 0.06 1.14 4.94 -3.82 -0.02 1.12 16 15 C -0.11 -1.53 4.67 -26.70 -0.12 -1.66 16 16 C -0.05 -0.64 0.29 -154.43 -0.04 -0.68 16 17 C -0.15 -2.08 4.33 -26.64 -0.12 -2.20 16 18 C 0.06 0.78 6.57 37.21 0.24 1.02 16 19 O -0.39 -5.46 10.76 -35.23 -0.38 -5.84 16 20 C 0.07 0.88 5.72 37.22 0.21 1.10 16 21 C -0.11 -1.33 1.90 -90.53 -0.17 -1.51 16 22 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 23 C 0.06 0.76 4.56 37.16 0.17 0.93 16 24 O -0.39 -4.68 10.30 -35.23 -0.36 -5.04 16 25 C 0.03 0.28 11.01 101.05 1.11 1.40 16 26 C -0.11 -1.65 3.96 -26.69 -0.11 -1.76 16 27 C 0.06 1.12 4.54 -3.82 -0.02 1.10 16 28 H 0.05 0.90 7.75 -51.93 -0.40 0.50 16 29 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.09 2.36 5.95 -51.93 -0.31 2.05 16 32 H 0.03 0.72 6.22 -51.93 -0.32 0.40 16 33 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 34 H 0.06 1.15 8.01 -51.93 -0.42 0.73 16 35 H 0.04 0.73 5.76 -51.93 -0.30 0.43 16 36 H 0.07 0.94 6.32 -51.93 -0.33 0.61 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 1.41 4.97 -51.93 -0.26 1.16 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.05 0.71 6.56 -51.93 -0.34 0.37 16 41 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.05 0.60 6.68 -51.93 -0.35 0.25 16 43 H 0.09 1.14 7.91 -51.93 -0.41 0.73 16 44 H 0.06 0.69 6.25 -51.93 -0.32 0.37 16 45 H 0.05 0.62 6.63 -51.93 -0.34 0.28 16 46 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 48 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.06 0.77 5.05 -51.92 -0.26 0.51 16 50 H 0.06 0.94 6.37 -51.93 -0.33 0.61 16 51 H 0.07 1.31 6.12 -51.93 -0.32 0.99 16 52 H 0.04 0.80 4.69 -51.93 -0.24 0.55 16 LS Contribution 365.60 15.07 5.51 5.51 Total: -1.00 -26.93 365.60 -8.56 -35.50 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -8.92 Total: 2.81 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: 0.91 Total: -13.58 kcal Atomic # 7 Polarization: -34.68 SS G_CDS: -0.30 Total: -34.98 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: -0.74 Total: -10.88 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -26.93 -8.56 -35.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255169914.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.857 kcal (2) G-P(sol) polarization free energy of solvation -26.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds