Wall clock time and date at job start Fri Apr 10 2020 22:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47553 * 2 1 4 4 H 1.09003 * 109.47242 * 305.00338 * 3 2 1 5 5 C 1.50696 * 109.47299 * 184.99865 * 3 2 1 6 6 H 1.07997 * 120.00184 * 239.99834 * 5 3 2 7 7 C 1.37883 * 119.99937 * 60.00492 * 5 3 2 8 8 N 1.31511 * 119.99549 * 359.97438 * 7 5 3 9 9 Si 1.86790 * 119.99913 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47438 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47261 * 119.99951 * 9 7 5 12 12 H 1.48504 * 109.47201 * 239.99643 * 9 7 5 13 13 N 1.46904 * 109.46841 * 65.00000 * 3 2 1 14 14 C 1.46849 * 110.99939 * 190.00193 * 13 3 2 15 15 C 1.53062 * 109.52112 * 174.10828 * 14 13 3 16 16 C 1.53004 * 109.27087 * 59.05258 * 15 14 13 17 17 C 1.53076 * 109.56253 * 62.57920 * 16 15 14 18 18 C 1.53108 * 109.15828 * 176.84471 * 17 16 15 19 19 O 1.42898 * 109.40310 * 302.50658 * 18 17 16 20 20 C 1.42902 * 114.11697 * 61.22167 * 19 18 17 21 21 C 1.53059 * 109.57327 * 182.40820 * 16 15 14 22 22 H 1.08998 * 109.52524 * 303.09070 * 21 16 15 23 23 C 1.52998 * 109.52247 * 63.27434 * 21 16 15 24 24 O 1.42899 * 109.47273 * 185.00113 * 23 21 16 25 25 C 1.42901 * 113.99943 * 179.97438 * 24 23 21 26 26 C 1.53016 * 109.34916 * 302.49946 * 16 15 14 27 27 C 1.46855 * 111.00038 * 65.77457 * 13 3 2 28 28 H 1.09005 * 109.46560 * 299.99803 * 1 2 3 29 29 H 1.09001 * 109.46823 * 59.99763 * 1 2 3 30 30 H 1.08999 * 109.47404 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47290 * 239.99733 * 2 1 3 32 32 H 1.09003 * 109.47332 * 120.00167 * 2 1 3 33 33 H 0.97001 * 119.99474 * 180.02562 * 8 7 5 34 34 H 1.09003 * 109.46182 * 54.09385 * 14 13 3 35 35 H 1.08997 * 109.46365 * 294.12674 * 14 13 3 36 36 H 1.09000 * 109.50198 * 299.11503 * 15 14 13 37 37 H 1.08998 * 109.53883 * 179.01166 * 15 14 13 38 38 H 1.09000 * 109.52147 * 296.74913 * 17 16 15 39 39 H 1.08998 * 109.51919 * 56.93861 * 17 16 15 40 40 H 1.09007 * 109.48276 * 62.48662 * 18 17 16 41 41 H 1.09004 * 109.48328 * 182.51448 * 18 17 16 42 42 H 1.08997 * 109.48256 * 58.78316 * 20 19 18 43 43 H 1.08995 * 109.48302 * 178.81143 * 20 19 18 44 44 H 1.08998 * 109.47124 * 304.99976 * 23 21 16 45 45 H 1.09000 * 109.47428 * 65.00016 * 23 21 16 46 46 H 1.09004 * 109.47240 * 60.00257 * 25 24 23 47 47 H 1.09006 * 109.47350 * 179.97438 * 25 24 23 48 48 H 1.09001 * 109.47378 * 299.99733 * 25 24 23 49 49 H 1.09008 * 109.50408 * 177.45081 * 26 16 15 50 50 H 1.08993 * 109.50993 * 297.57643 * 26 16 15 51 51 H 1.08999 * 109.46518 * 305.91029 * 27 13 3 52 52 H 1.09003 * 109.46024 * 65.89500 * 27 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9816 -0.8418 5 6 3.5420 1.4442 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4062 0.3366 -2.1729 9 14 6.0049 0.8811 -1.3818 10 1 6.5987 1.5470 -0.1948 11 1 6.4970 -0.5176 -1.4630 12 1 6.3990 1.6166 -2.6102 13 7 1.6515 2.0992 1.2553 14 6 1.9125 3.5431 1.1965 15 6 1.3628 4.2140 2.4577 16 6 2.0346 3.6023 3.6887 17 6 3.5394 3.8788 3.6419 18 6 4.1906 3.3321 4.9153 19 8 3.5781 3.9337 6.0576 20 6 2.1796 3.6663 6.1790 21 6 1.4465 4.2260 4.9568 22 1 1.5706 5.3083 4.9217 23 6 -0.0416 3.8836 5.0522 24 8 -0.6154 4.5611 6.1719 25 6 -2.0104 4.3085 6.3516 26 6 1.7916 2.0916 3.7008 27 6 2.3290 1.4831 2.4033 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 3.8293 -0.0618 -2.9495 34 1 1.4238 3.9650 0.3182 35 1 2.9868 3.7156 1.1322 36 1 0.2859 4.0554 2.5142 37 1 1.5719 5.2831 2.4225 38 1 3.9732 3.3872 2.7711 39 1 3.7105 4.9533 3.5777 40 1 4.0557 2.2512 4.9574 41 1 5.2553 3.5656 4.9082 42 1 2.0191 2.5898 6.2377 43 1 1.7958 4.1408 7.0821 44 1 -0.5463 4.1990 4.1390 45 1 -0.1595 2.8075 5.1793 46 1 -2.1695 3.2411 6.5055 47 1 -2.3701 4.8581 7.2215 48 1 -2.5557 4.6331 5.4654 49 1 2.3070 1.6469 4.5522 50 1 0.7223 1.8955 3.7791 51 1 2.1429 0.4091 2.4014 52 1 3.4013 1.6661 2.3332 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255169914.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:40:38 Heat of formation + Delta-G solvation = -116.231185 kcal Electronic energy + Delta-G solvation = -29009.329550 eV Core-core repulsion = 25393.661373 eV Total energy + Delta-G solvation = -3615.668178 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.91854 -39.20701 -38.54077 -36.72809 -34.44266 -33.30782 -32.50075 -31.68594 -30.02226 -28.18784 -27.67854 -26.44535 -25.38780 -24.46907 -23.96158 -23.16460 -21.74704 -20.90265 -19.19150 -18.05358 -17.60179 -17.42622 -17.14205 -16.94902 -16.27901 -16.14500 -15.92411 -15.56043 -15.44407 -15.22899 -14.98608 -14.50022 -14.46573 -14.33704 -13.80864 -13.62138 -13.28915 -13.22850 -12.97091 -12.94340 -12.87579 -12.65675 -12.52148 -12.48056 -12.27643 -12.10814 -12.05059 -11.89736 -11.65274 -11.51608 -11.39137 -11.26731 -11.14457 -10.86187 -10.72437 -10.53730 -10.40224 -10.15953 -8.81111 -8.00279 -6.23199 1.34631 1.38800 1.46898 2.40049 2.81595 2.98887 3.17143 3.42348 3.64167 3.71572 3.84967 3.92503 4.23143 4.25275 4.33774 4.37692 4.41876 4.47197 4.52478 4.56763 4.61424 4.63369 4.65454 4.65961 4.75368 4.77651 4.82046 4.88333 4.91074 4.91442 4.93633 5.01081 5.04600 5.08967 5.12337 5.19235 5.28062 5.31222 5.38245 5.42531 5.45612 5.53535 5.56337 5.68047 5.83013 6.11565 6.24481 6.26862 6.27815 6.44319 6.76643 7.00017 7.47804 8.93388 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.016627 B = 0.004520 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.643839 B = 6192.800177 C = 7291.877942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.105 4.105 3 C 0.220 3.780 4 H 0.000 1.000 5 C -0.544 4.544 6 H 0.051 0.949 7 C 0.022 3.978 8 N -0.911 5.911 9 Si 0.940 3.060 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.284 1.284 13 N -0.525 5.525 14 C 0.064 3.936 15 C -0.095 4.095 16 C -0.041 4.041 17 C -0.144 4.144 18 C 0.061 3.939 19 O -0.396 6.396 20 C 0.069 3.931 21 C -0.097 4.097 22 H 0.078 0.922 23 C 0.069 3.931 24 O -0.410 6.410 25 C 0.026 3.974 26 C -0.103 4.103 27 C 0.066 3.934 28 H 0.059 0.941 29 H 0.030 0.970 30 H 0.043 0.957 31 H 0.059 0.941 32 H 0.032 0.968 33 H 0.260 0.740 34 H 0.049 0.951 35 H 0.018 0.982 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.055 0.945 41 H 0.098 0.902 42 H 0.057 0.943 43 H 0.101 0.899 44 H 0.058 0.942 45 H 0.059 0.941 46 H 0.048 0.952 47 H 0.098 0.902 48 H 0.045 0.955 49 H 0.071 0.929 50 H 0.075 0.925 51 H 0.057 0.943 52 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.997 6.041 15.850 18.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.143 4.143 3 C 0.113 3.887 4 H 0.018 0.982 5 C -0.583 4.583 6 H 0.069 0.931 7 C -0.178 4.178 8 N -0.551 5.551 9 Si 0.767 3.233 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.210 1.210 13 N -0.249 5.249 14 C -0.064 4.064 15 C -0.133 4.133 16 C -0.042 4.042 17 C -0.182 4.182 18 C -0.016 4.016 19 O -0.315 6.315 20 C -0.007 4.007 21 C -0.116 4.116 22 H 0.097 0.903 23 C -0.007 4.007 24 O -0.330 6.330 25 C -0.070 4.070 26 C -0.140 4.140 27 C -0.062 4.062 28 H 0.078 0.922 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.051 0.949 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.036 0.964 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.073 0.927 41 H 0.116 0.884 42 H 0.075 0.925 43 H 0.119 0.881 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.067 0.933 47 H 0.116 0.884 48 H 0.064 0.936 49 H 0.089 0.911 50 H 0.094 0.906 51 H 0.075 0.925 52 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -7.287 6.119 15.991 18.608 hybrid contribution 1.754 -0.387 -1.443 2.304 sum -5.533 5.732 14.549 16.587 Atomic orbital electron populations 1.21558 0.96371 0.99648 1.00632 1.21429 0.94429 0.98294 1.00192 1.19023 0.91697 0.91468 0.86541 0.98196 1.22011 0.94147 1.37157 1.05015 0.93077 1.25564 1.01319 0.95162 0.95708 1.70008 1.35993 1.39216 1.09856 0.85782 0.82073 0.77615 0.77816 1.19545 1.20787 1.21045 1.62340 1.56764 1.02240 1.03555 1.21864 0.97762 0.89321 0.97482 1.21636 1.00431 0.98714 0.92527 1.20382 0.94471 0.95404 0.93905 1.22242 0.95554 1.01775 0.98623 1.22631 0.97545 0.96894 0.84485 1.87891 1.22796 1.75253 1.45594 1.22659 0.80195 0.99909 0.97937 1.21612 0.93687 1.01276 0.95031 0.90328 1.22609 0.92757 0.96418 0.88937 1.87813 1.24559 1.71351 1.49255 1.22902 0.80721 1.01206 1.02210 1.21781 1.01848 0.94026 0.96370 1.21896 0.95783 0.98144 0.90417 0.92239 0.95095 0.93783 0.92224 0.94950 0.93106 0.93250 0.96402 0.90714 0.91156 0.91814 0.91250 0.92709 0.88373 0.92508 0.88100 0.92365 0.92256 0.93341 0.88394 0.93612 0.91087 0.90641 0.92480 0.96059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.85 9.80 71.98 0.71 -4.15 16 2 C -0.10 -4.87 5.16 30.59 0.16 -4.71 16 3 C 0.22 10.61 1.71 44.17 0.08 10.68 16 4 H 0.00 0.01 7.99 -2.39 -0.02 -0.01 16 5 C -0.54 -28.50 7.23 25.60 0.19 -28.32 16 6 H 0.05 2.69 5.85 -2.91 -0.02 2.67 16 7 C 0.02 1.19 5.29 84.66 0.45 1.64 16 8 N -0.91 -51.39 11.29 21.45 0.24 -51.14 16 9 Si 0.94 43.04 29.54 68.60 2.03 45.07 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 13 N -0.53 -20.62 4.06 -875.38 -3.55 -24.17 16 14 C 0.06 2.34 4.94 86.33 0.43 2.76 16 15 C -0.10 -2.63 4.67 30.62 0.14 -2.49 16 16 C -0.04 -1.06 0.29 -52.13 -0.01 -1.07 16 17 C -0.14 -3.93 4.33 30.66 0.13 -3.80 16 18 C 0.06 1.52 6.57 72.02 0.47 2.00 16 19 O -0.40 -10.34 10.76 -148.98 -1.60 -11.94 16 20 C 0.07 1.56 5.72 72.02 0.41 1.97 16 21 C -0.10 -2.19 1.90 -10.74 -0.02 -2.21 16 22 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 23 C 0.07 1.42 4.56 71.98 0.33 1.75 16 24 O -0.41 -8.58 10.30 -148.98 -1.54 -10.11 16 25 C 0.03 0.38 11.01 113.37 1.25 1.63 16 26 C -0.10 -2.78 3.96 30.62 0.12 -2.66 16 27 C 0.07 2.35 4.54 86.33 0.39 2.75 16 28 H 0.06 2.16 7.75 -2.38 -0.02 2.14 16 29 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.06 3.17 5.95 -2.39 -0.01 3.16 16 32 H 0.03 1.46 6.22 -2.39 -0.01 1.45 16 33 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 34 H 0.05 1.88 8.01 -2.39 -0.02 1.87 16 35 H 0.02 0.72 5.76 -2.39 -0.01 0.70 16 36 H 0.07 1.96 6.32 -2.39 -0.02 1.95 16 37 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.06 2.06 4.97 -2.39 -0.01 2.05 16 39 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.05 1.35 6.56 -2.38 -0.02 1.34 16 41 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.06 1.20 6.68 -2.39 -0.02 1.18 16 43 H 0.10 2.17 7.91 -2.39 -0.02 2.15 16 44 H 0.06 1.21 6.25 -2.39 -0.01 1.19 16 45 H 0.06 1.16 6.63 -2.39 -0.02 1.15 16 46 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 47 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 48 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 49 H 0.07 1.76 5.05 -2.38 -0.01 1.75 16 50 H 0.08 1.94 6.37 -2.39 -0.02 1.92 16 51 H 0.06 2.16 6.12 -2.39 -0.01 2.15 16 52 H 0.02 0.85 4.69 -2.39 -0.01 0.84 16 Total: -1.00 -58.28 365.60 1.69 -56.59 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 0.90 Total: 19.94 kcal Atomic # 6 Polarization: -29.44 SS G_CDS: 5.21 Total: -24.23 kcal Atomic # 7 Polarization: -72.00 SS G_CDS: -3.31 Total: -75.31 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -3.14 Total: -22.05 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -58.28 1.69 -56.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255169914.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.643 kcal (2) G-P(sol) polarization free energy of solvation -58.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds