Wall clock time and date at job start Fri Apr 10 2020 22:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.46992 * 2 1 4 4 H 1.08997 * 109.47100 * 177.44743 * 3 2 1 5 5 C 1.50702 * 109.46684 * 297.44456 * 3 2 1 6 6 H 1.08003 * 120.00256 * 120.00827 * 5 3 2 7 7 C 1.37881 * 120.00094 * 299.99683 * 5 3 2 8 8 N 1.31513 * 119.99661 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99929 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47126 * 90.00416 * 9 7 5 11 11 H 1.48503 * 109.46744 * 210.00425 * 9 7 5 12 12 H 1.48503 * 109.47017 * 330.00207 * 9 7 5 13 13 N 1.46894 * 109.47521 * 57.44325 * 3 2 1 14 14 C 1.46850 * 111.00164 * 54.37218 * 13 3 2 15 15 C 1.53034 * 109.52659 * 185.83767 * 14 13 3 16 16 C 1.53114 * 109.27950 * 300.82707 * 15 14 13 17 17 C 1.53004 * 109.52186 * 177.55919 * 16 15 14 18 18 C 1.50700 * 109.47567 * 65.31324 * 17 16 15 19 19 O 1.20828 * 119.99335 * 0.02562 * 18 17 16 20 20 O 1.34221 * 120.00430 * 179.97438 * 18 17 16 21 21 C 1.45204 * 117.00264 * 180.02562 * 20 18 17 22 22 C 1.53002 * 109.46906 * 60.00021 * 21 20 18 23 23 C 1.52996 * 109.47228 * 180.02562 * 21 20 18 24 24 C 1.53004 * 109.46890 * 300.00329 * 21 20 18 25 25 C 1.53113 * 109.16267 * 57.65243 * 16 15 14 26 26 C 1.46846 * 111.00513 * 178.58785 * 13 3 2 27 27 H 1.09000 * 109.47601 * 295.28539 * 1 2 3 28 28 H 1.09005 * 109.47241 * 175.27885 * 1 2 3 29 29 H 1.09005 * 109.47320 * 55.28338 * 1 2 3 30 30 H 1.08997 * 109.47110 * 119.99249 * 2 1 3 31 31 H 1.08995 * 109.47639 * 240.00017 * 2 1 3 32 32 H 0.97003 * 119.99649 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.46191 * 305.86476 * 14 13 3 34 34 H 1.09004 * 109.45637 * 65.82589 * 14 13 3 35 35 H 1.09004 * 109.50286 * 180.88036 * 15 14 13 36 36 H 1.09002 * 109.49738 * 60.76803 * 15 14 13 37 37 H 1.08998 * 109.52458 * 297.74371 * 16 15 14 38 38 H 1.09001 * 109.47434 * 185.31823 * 17 16 15 39 39 H 1.09007 * 109.47032 * 305.31181 * 17 16 15 40 40 H 1.08997 * 109.46747 * 60.00349 * 22 21 20 41 41 H 1.09003 * 109.46796 * 179.97438 * 22 21 20 42 42 H 1.08996 * 109.47315 * 299.99964 * 22 21 20 43 43 H 1.08999 * 109.47385 * 59.99739 * 23 21 20 44 44 H 1.09006 * 109.47018 * 180.02562 * 23 21 20 45 45 H 1.09009 * 109.46944 * 299.99730 * 23 21 20 46 46 H 1.08996 * 109.47422 * 59.99980 * 24 21 20 47 47 H 1.09003 * 109.46918 * 180.02562 * 24 21 20 48 48 H 1.08999 * 109.47062 * 299.99856 * 24 21 20 49 49 H 1.09002 * 109.50452 * 182.40434 * 25 16 15 50 50 H 1.09001 * 109.50290 * 62.28976 * 25 16 15 51 51 H 1.09004 * 109.46093 * 294.17686 * 26 13 3 52 52 H 1.08999 * 109.46003 * 54.14234 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1289 1.4429 0.0458 5 6 1.5899 2.1343 -1.2610 6 1 0.9657 3.0137 -1.2012 7 6 1.9752 1.6448 -2.4910 8 7 2.7351 0.5739 -2.5638 9 14 1.4180 2.5027 -4.0540 10 1 2.4130 3.5383 -4.4319 11 1 1.2990 1.5073 -5.1495 12 1 0.0989 3.1446 -3.8229 13 7 1.5005 2.1527 1.1673 14 6 1.8067 1.4320 2.4096 15 6 1.1086 2.1194 3.5851 16 6 1.5912 3.5693 3.6819 17 6 0.8517 4.2795 4.8176 18 6 1.2312 3.6520 6.1341 19 8 2.0133 2.7314 6.1612 20 8 0.7012 4.1163 7.2765 21 6 1.1126 3.4642 8.5070 22 6 2.6278 3.5973 8.6727 23 6 0.4091 4.1249 9.6941 24 6 0.7339 1.9828 8.4503 25 6 1.3041 4.2840 2.3586 26 6 1.9966 3.5339 1.2186 27 1 -0.3634 0.4389 0.9292 28 1 -0.3634 -1.0242 -0.0846 29 1 -0.3634 0.5853 -0.8447 30 1 1.8933 -0.5137 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.0065 0.2297 -3.4291 33 1 1.4547 0.4035 2.3290 34 1 2.8842 1.4349 2.5749 35 1 1.3488 1.5934 4.5091 36 1 0.0302 2.1046 3.4270 37 1 2.6631 3.5841 3.8788 38 1 1.1255 5.3346 4.8257 39 1 -0.2237 4.1845 4.6664 40 1 2.8975 4.6526 8.7131 41 1 2.9365 3.1081 9.5967 42 1 3.1286 3.1263 7.8270 43 1 -0.6702 4.0298 9.5758 44 1 0.7183 3.6356 10.6179 45 1 0.6786 5.1804 9.7347 46 1 1.2347 1.5119 7.6045 47 1 1.0423 1.4934 9.3741 48 1 -0.3455 1.8880 8.3321 49 1 1.6839 5.3046 2.4063 50 1 0.2287 4.3033 2.1813 51 1 3.0731 3.5270 1.3896 52 1 1.7823 4.0320 0.2731 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255176085.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:40:42 Heat of formation + Delta-G solvation = -103.839012 kcal Electronic energy + Delta-G solvation = -27611.662789 eV Core-core repulsion = 23996.531977 eV Total energy + Delta-G solvation = -3615.130813 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.99682 -38.71093 -37.15003 -35.13693 -34.26020 -32.48571 -31.07576 -30.06826 -28.48212 -27.67489 -27.63225 -26.05784 -23.86297 -22.83417 -22.21009 -21.16938 -19.63918 -19.49281 -18.73786 -17.15270 -16.58714 -16.26533 -16.01649 -15.42944 -14.72298 -14.48637 -14.26230 -14.07439 -13.95176 -13.77581 -13.44917 -13.02369 -12.83475 -12.73335 -12.49193 -12.36047 -12.16787 -12.15084 -12.04981 -11.84676 -11.68017 -11.43921 -11.38544 -11.31843 -10.90599 -10.83444 -10.65400 -10.55081 -10.48035 -10.35319 -10.13839 -10.04992 -9.81116 -9.65588 -9.48951 -9.26349 -8.71136 -8.34567 -7.03137 -5.95736 -3.99141 2.21673 2.58439 3.32398 3.39513 3.43015 4.44270 4.44754 4.49687 4.56916 4.65857 4.83945 4.95879 5.10962 5.19742 5.26902 5.28561 5.36128 5.41642 5.46892 5.56808 5.58717 5.59882 5.63565 5.71996 5.84745 5.86944 6.01176 6.05308 6.06302 6.18355 6.25953 6.35651 6.42525 6.46413 6.58430 6.61333 6.63860 6.70945 6.77519 6.84398 6.89312 7.17912 7.39687 7.49051 7.72234 7.81837 7.83490 7.89059 8.30359 8.42013 8.69382 9.06929 9.64691 11.10587 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.030995 B = 0.002785 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.146249 B =10050.996240 C =10438.700529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.113 4.113 3 C 0.217 3.783 4 H -0.005 1.005 5 C -0.493 4.493 6 H 0.062 0.938 7 C 0.058 3.942 8 N -0.893 5.893 9 Si 0.892 3.108 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.528 5.528 14 C 0.054 3.946 15 C -0.112 4.112 16 C -0.075 4.075 17 C -0.110 4.110 18 C 0.463 3.537 19 O -0.496 6.496 20 O -0.356 6.356 21 C 0.116 3.884 22 C -0.183 4.183 23 C -0.140 4.140 24 C -0.183 4.183 25 C -0.110 4.110 26 C 0.066 3.934 27 H 0.040 0.960 28 H 0.014 0.986 29 H 0.059 0.941 30 H 0.014 0.986 31 H 0.092 0.908 32 H 0.259 0.741 33 H 0.073 0.927 34 H 0.016 0.984 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.059 0.941 41 H 0.069 0.931 42 H 0.085 0.915 43 H 0.066 0.934 44 H 0.076 0.924 45 H 0.065 0.935 46 H 0.086 0.914 47 H 0.069 0.931 48 H 0.061 0.939 49 H 0.057 0.943 50 H 0.069 0.931 51 H 0.016 0.984 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.917 6.901 21.402 22.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.152 4.152 3 C 0.111 3.889 4 H 0.012 0.988 5 C -0.532 4.532 6 H 0.080 0.920 7 C -0.142 4.142 8 N -0.533 5.533 9 Si 0.720 3.280 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.254 5.254 14 C -0.074 4.074 15 C -0.150 4.150 16 C -0.093 4.093 17 C -0.147 4.147 18 C 0.306 3.694 19 O -0.383 6.383 20 O -0.274 6.274 21 C 0.080 3.920 22 C -0.240 4.240 23 C -0.197 4.197 24 C -0.240 4.240 25 C -0.148 4.148 26 C -0.063 4.063 27 H 0.059 0.941 28 H 0.033 0.967 29 H 0.078 0.922 30 H 0.032 0.968 31 H 0.110 0.890 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.035 0.965 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.104 0.896 43 H 0.085 0.915 44 H 0.095 0.905 45 H 0.084 0.916 46 H 0.104 0.896 47 H 0.088 0.912 48 H 0.080 0.920 49 H 0.075 0.925 50 H 0.088 0.912 51 H 0.034 0.966 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.099 6.506 21.256 22.604 hybrid contribution 0.743 0.272 -0.681 1.044 sum -3.356 6.778 20.574 21.920 Atomic orbital electron populations 1.21471 0.97318 0.97545 1.01446 1.21596 0.95101 0.98343 1.00124 1.19234 0.92273 0.90680 0.86710 0.98760 1.21071 1.30658 1.11776 0.89672 0.92021 1.24911 0.95306 0.95099 0.98921 1.69882 1.36341 1.22523 1.24538 0.86591 0.79058 0.79213 0.83108 1.20921 1.21380 1.19873 1.62040 1.59887 1.01208 1.02222 1.22033 0.96653 0.98408 0.90354 1.21746 1.00315 0.94442 0.98517 1.21074 0.99740 0.95849 0.92657 1.21599 1.03657 1.01272 0.88221 1.23847 0.77975 0.81512 0.86025 1.90564 1.32757 1.27702 1.87304 1.86561 1.66029 1.59493 1.15348 1.22138 0.95020 0.92796 0.82061 1.22485 0.94646 1.02676 1.04171 1.21847 1.01135 1.01346 0.95410 1.22490 1.02353 0.94802 1.04381 1.21674 1.01773 0.97670 0.93633 1.21886 0.95253 0.91005 0.98144 0.94123 0.96654 0.92224 0.96774 0.89001 0.93091 0.90835 0.96537 0.91166 0.91999 0.90926 0.88130 0.87801 0.92154 0.91231 0.89628 0.91509 0.90510 0.91585 0.89568 0.91248 0.92038 0.92459 0.91242 0.96579 0.89718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.67 9.41 37.15 0.35 -2.32 16 2 C -0.11 -2.74 4.95 -26.73 -0.13 -2.87 16 3 C 0.22 5.42 1.76 -68.87 -0.12 5.30 16 4 H -0.01 -0.15 8.14 -51.93 -0.42 -0.57 16 5 C -0.49 -13.15 6.64 -34.44 -0.23 -13.38 16 6 H 0.06 1.65 6.81 -52.48 -0.36 1.29 16 7 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 8 N -0.89 -25.37 11.30 55.43 0.63 -24.74 16 9 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 13 N -0.53 -11.16 3.78 -228.08 -0.86 -12.02 16 14 C 0.05 1.03 4.83 -3.83 -0.02 1.01 16 15 C -0.11 -1.76 5.09 -26.65 -0.14 -1.90 16 16 C -0.07 -1.03 1.90 -90.50 -0.17 -1.20 16 17 C -0.11 -1.20 5.29 -27.88 -0.15 -1.35 16 18 C 0.46 5.66 7.00 36.01 0.25 5.91 16 19 O -0.50 -7.07 9.50 -18.75 -0.18 -7.25 16 20 O -0.36 -4.02 9.89 -39.23 -0.39 -4.41 16 21 C 0.12 1.10 1.13 -90.62 -0.10 1.00 16 22 C -0.18 -1.71 8.37 37.16 0.31 -1.40 16 23 C -0.14 -0.98 8.85 37.16 0.33 -0.65 16 24 C -0.18 -1.75 8.37 37.16 0.31 -1.44 16 25 C -0.11 -1.61 5.38 -26.66 -0.14 -1.75 16 26 C 0.07 1.26 5.27 -3.84 -0.02 1.24 16 27 H 0.04 0.85 7.18 -51.93 -0.37 0.48 16 28 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 1.43 7.15 -51.93 -0.37 1.06 16 30 H 0.01 0.31 6.36 -51.93 -0.33 -0.02 16 31 H 0.09 2.48 6.00 -51.93 -0.31 2.17 16 32 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 33 H 0.07 1.44 5.59 -51.93 -0.29 1.15 16 34 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 1.10 6.05 -51.93 -0.31 0.79 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.07 1.10 7.95 -51.93 -0.41 0.68 16 38 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.10 1.02 8.14 -51.92 -0.42 0.60 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.08 1.00 5.89 -51.93 -0.31 0.69 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 46 H 0.09 1.02 5.89 -51.93 -0.31 0.72 16 47 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 51 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 52 H 0.08 1.75 6.39 -51.93 -0.33 1.42 16 LS Contribution 384.70 15.07 5.80 5.80 Total: -1.00 -28.86 384.70 -9.39 -38.25 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -9.60 Total: 0.51 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: 0.24 Total: -12.32 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: -0.23 Total: -36.76 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: -0.57 Total: -11.65 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -28.86 -9.39 -38.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255176085.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.588 kcal (2) G-P(sol) polarization free energy of solvation -28.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds