Wall clock time and date at job start Fri Apr 10 2020 22:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.46992 * 2 1 4 4 H 1.08997 * 109.47100 * 177.44743 * 3 2 1 5 5 C 1.50702 * 109.46684 * 297.44456 * 3 2 1 6 6 H 1.08003 * 120.00256 * 120.00827 * 5 3 2 7 7 C 1.37881 * 120.00094 * 299.99683 * 5 3 2 8 8 N 1.31513 * 119.99661 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99929 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47126 * 90.00416 * 9 7 5 11 11 H 1.48503 * 109.46744 * 210.00425 * 9 7 5 12 12 H 1.48503 * 109.47017 * 330.00207 * 9 7 5 13 13 N 1.46894 * 109.47521 * 57.44325 * 3 2 1 14 14 C 1.46850 * 111.00164 * 54.37218 * 13 3 2 15 15 C 1.53034 * 109.52659 * 185.83767 * 14 13 3 16 16 C 1.53114 * 109.27950 * 300.82707 * 15 14 13 17 17 C 1.53004 * 109.52186 * 177.55919 * 16 15 14 18 18 C 1.50700 * 109.47567 * 65.31324 * 17 16 15 19 19 O 1.20828 * 119.99335 * 0.02562 * 18 17 16 20 20 O 1.34221 * 120.00430 * 179.97438 * 18 17 16 21 21 C 1.45204 * 117.00264 * 180.02562 * 20 18 17 22 22 C 1.53002 * 109.46906 * 60.00021 * 21 20 18 23 23 C 1.52996 * 109.47228 * 180.02562 * 21 20 18 24 24 C 1.53004 * 109.46890 * 300.00329 * 21 20 18 25 25 C 1.53113 * 109.16267 * 57.65243 * 16 15 14 26 26 C 1.46846 * 111.00513 * 178.58785 * 13 3 2 27 27 H 1.09000 * 109.47601 * 295.28539 * 1 2 3 28 28 H 1.09005 * 109.47241 * 175.27885 * 1 2 3 29 29 H 1.09005 * 109.47320 * 55.28338 * 1 2 3 30 30 H 1.08997 * 109.47110 * 119.99249 * 2 1 3 31 31 H 1.08995 * 109.47639 * 240.00017 * 2 1 3 32 32 H 0.97003 * 119.99649 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.46191 * 305.86476 * 14 13 3 34 34 H 1.09004 * 109.45637 * 65.82589 * 14 13 3 35 35 H 1.09004 * 109.50286 * 180.88036 * 15 14 13 36 36 H 1.09002 * 109.49738 * 60.76803 * 15 14 13 37 37 H 1.08998 * 109.52458 * 297.74371 * 16 15 14 38 38 H 1.09001 * 109.47434 * 185.31823 * 17 16 15 39 39 H 1.09007 * 109.47032 * 305.31181 * 17 16 15 40 40 H 1.08997 * 109.46747 * 60.00349 * 22 21 20 41 41 H 1.09003 * 109.46796 * 179.97438 * 22 21 20 42 42 H 1.08996 * 109.47315 * 299.99964 * 22 21 20 43 43 H 1.08999 * 109.47385 * 59.99739 * 23 21 20 44 44 H 1.09006 * 109.47018 * 180.02562 * 23 21 20 45 45 H 1.09009 * 109.46944 * 299.99730 * 23 21 20 46 46 H 1.08996 * 109.47422 * 59.99980 * 24 21 20 47 47 H 1.09003 * 109.46918 * 180.02562 * 24 21 20 48 48 H 1.08999 * 109.47062 * 299.99856 * 24 21 20 49 49 H 1.09002 * 109.50452 * 182.40434 * 25 16 15 50 50 H 1.09001 * 109.50290 * 62.28976 * 25 16 15 51 51 H 1.09004 * 109.46093 * 294.17686 * 26 13 3 52 52 H 1.08999 * 109.46003 * 54.14234 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1289 1.4429 0.0458 5 6 1.5899 2.1343 -1.2610 6 1 0.9657 3.0137 -1.2012 7 6 1.9752 1.6448 -2.4910 8 7 2.7351 0.5739 -2.5638 9 14 1.4180 2.5027 -4.0540 10 1 2.4130 3.5383 -4.4319 11 1 1.2990 1.5073 -5.1495 12 1 0.0989 3.1446 -3.8229 13 7 1.5005 2.1527 1.1673 14 6 1.8067 1.4320 2.4096 15 6 1.1086 2.1194 3.5851 16 6 1.5912 3.5693 3.6819 17 6 0.8517 4.2795 4.8176 18 6 1.2312 3.6520 6.1341 19 8 2.0133 2.7314 6.1612 20 8 0.7012 4.1163 7.2765 21 6 1.1126 3.4642 8.5070 22 6 2.6278 3.5973 8.6727 23 6 0.4091 4.1249 9.6941 24 6 0.7339 1.9828 8.4503 25 6 1.3041 4.2840 2.3586 26 6 1.9966 3.5339 1.2186 27 1 -0.3634 0.4389 0.9292 28 1 -0.3634 -1.0242 -0.0846 29 1 -0.3634 0.5853 -0.8447 30 1 1.8933 -0.5137 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.0065 0.2297 -3.4291 33 1 1.4547 0.4035 2.3290 34 1 2.8842 1.4349 2.5749 35 1 1.3488 1.5934 4.5091 36 1 0.0302 2.1046 3.4270 37 1 2.6631 3.5841 3.8788 38 1 1.1255 5.3346 4.8257 39 1 -0.2237 4.1845 4.6664 40 1 2.8975 4.6526 8.7131 41 1 2.9365 3.1081 9.5967 42 1 3.1286 3.1263 7.8270 43 1 -0.6702 4.0298 9.5758 44 1 0.7183 3.6356 10.6179 45 1 0.6786 5.1804 9.7347 46 1 1.2347 1.5119 7.6045 47 1 1.0423 1.4934 9.3741 48 1 -0.3455 1.8880 8.3321 49 1 1.6839 5.3046 2.4063 50 1 0.2287 4.3033 2.1813 51 1 3.0731 3.5270 1.3896 52 1 1.7823 4.0320 0.2731 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255176085.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:40:41 Heat of formation + Delta-G solvation = -118.253083 kcal Electronic energy + Delta-G solvation = -27612.287830 eV Core-core repulsion = 23996.531977 eV Total energy + Delta-G solvation = -3615.755854 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.89534 -40.14693 -38.19994 -36.67902 -35.05270 -34.23901 -32.81714 -31.57520 -29.84452 -28.36271 -28.27133 -27.90408 -25.55070 -24.20767 -23.74141 -22.33068 -21.03601 -20.49072 -20.36651 -18.15274 -18.01660 -17.41124 -17.22241 -17.11452 -16.08221 -15.68788 -15.65784 -15.36755 -15.19070 -14.97069 -14.67507 -14.54865 -14.24568 -13.96180 -13.64495 -13.48536 -13.27956 -13.24361 -12.95416 -12.87842 -12.83084 -12.80736 -12.70106 -12.60407 -12.38086 -12.33142 -12.14309 -12.03122 -11.89963 -11.79673 -11.50813 -11.44041 -11.34123 -11.28922 -11.04026 -10.73673 -10.62316 -10.40268 -8.84720 -8.05762 -6.16055 1.31536 1.42987 1.44438 1.54615 1.77784 2.44923 3.21779 3.41362 3.65186 3.78770 3.81495 3.83135 3.90237 3.98560 4.13943 4.42551 4.44017 4.53072 4.59716 4.61126 4.62082 4.66115 4.71850 4.73483 4.77577 4.81925 4.83460 4.87821 4.89776 4.91004 4.96313 5.08685 5.13577 5.15289 5.18510 5.25857 5.27665 5.30341 5.31047 5.33052 5.44147 5.52718 5.58676 5.68598 5.76310 5.80349 5.90907 6.34727 6.50259 6.81699 6.93147 6.98158 7.51808 8.99994 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.030995 B = 0.002785 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.146249 B =10050.996240 C =10438.700529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.110 4.110 3 C 0.222 3.778 4 H -0.053 1.053 5 C -0.499 4.499 6 H 0.060 0.940 7 C 0.010 3.990 8 N -0.923 5.923 9 Si 0.955 3.045 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.265 1.265 13 N -0.526 5.526 14 C 0.055 3.945 15 C -0.101 4.101 16 C -0.068 4.068 17 C -0.102 4.102 18 C 0.462 3.538 19 O -0.523 6.523 20 O -0.358 6.358 21 C 0.106 3.894 22 C -0.180 4.180 23 C -0.136 4.136 24 C -0.181 4.181 25 C -0.097 4.097 26 C 0.062 3.938 27 H 0.053 0.947 28 H 0.035 0.965 29 H 0.039 0.961 30 H 0.022 0.978 31 H 0.061 0.939 32 H 0.259 0.741 33 H 0.065 0.935 34 H -0.002 1.002 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.057 0.943 38 H 0.128 0.872 39 H 0.124 0.876 40 H 0.064 0.936 41 H 0.086 0.914 42 H 0.058 0.942 43 H 0.069 0.931 44 H 0.095 0.905 45 H 0.070 0.930 46 H 0.059 0.941 47 H 0.086 0.914 48 H 0.063 0.937 49 H 0.086 0.914 50 H 0.078 0.922 51 H -0.001 1.001 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.897 8.685 23.172 25.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.148 4.148 3 C 0.115 3.885 4 H -0.036 1.036 5 C -0.537 4.537 6 H 0.078 0.922 7 C -0.188 4.188 8 N -0.564 5.564 9 Si 0.781 3.219 10 H -0.205 1.205 11 H -0.213 1.213 12 H -0.190 1.190 13 N -0.250 5.250 14 C -0.073 4.073 15 C -0.139 4.139 16 C -0.087 4.087 17 C -0.139 4.139 18 C 0.306 3.694 19 O -0.412 6.412 20 O -0.275 6.275 21 C 0.070 3.930 22 C -0.237 4.237 23 C -0.193 4.193 24 C -0.238 4.238 25 C -0.135 4.135 26 C -0.067 4.067 27 H 0.072 0.928 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.041 0.959 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.016 0.984 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.146 0.854 39 H 0.142 0.858 40 H 0.083 0.917 41 H 0.105 0.895 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.114 0.886 45 H 0.089 0.911 46 H 0.078 0.922 47 H 0.105 0.895 48 H 0.082 0.918 49 H 0.105 0.895 50 H 0.097 0.903 51 H 0.018 0.982 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.094 8.311 23.050 25.249 hybrid contribution 1.434 -0.321 -1.166 1.876 sum -4.660 7.989 21.884 23.758 Atomic orbital electron populations 1.21313 0.95324 0.98580 1.01140 1.21472 0.96732 0.97561 0.99032 1.19035 0.89500 0.91753 0.88206 1.03582 1.21266 1.30305 1.11653 0.90499 0.92185 1.25676 0.95418 0.95715 1.01986 1.70033 1.37415 1.23836 1.25093 0.85597 0.78897 0.78136 0.79270 1.20499 1.21278 1.18958 1.62045 1.59197 1.02013 1.01775 1.22072 0.95983 0.98438 0.90825 1.21647 1.00244 0.95508 0.96510 1.20932 0.99293 0.94826 0.93669 1.21530 1.04210 1.02075 0.86117 1.24077 0.77468 0.81071 0.86743 1.90579 1.33961 1.28929 1.87719 1.86552 1.65810 1.59536 1.15646 1.22431 0.95375 0.92936 0.82215 1.22450 0.94509 1.02858 1.03882 1.21863 1.01038 1.01567 0.94804 1.22460 1.02199 0.94988 1.04150 1.21584 1.01756 0.98385 0.91741 1.21966 0.94937 0.90254 0.99518 0.92842 0.94641 0.94188 0.95898 0.92029 0.93209 0.91618 0.98414 0.91125 0.91123 0.92475 0.85363 0.85837 0.91687 0.89497 0.92282 0.91192 0.88615 0.91133 0.92208 0.89509 0.91752 0.89519 0.90287 0.98240 0.91510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.67 9.41 71.98 0.68 -3.99 16 2 C -0.11 -5.45 4.95 30.59 0.15 -5.30 16 3 C 0.22 11.53 1.76 44.17 0.08 11.61 16 4 H -0.05 -3.20 8.14 -2.39 -0.02 -3.22 16 5 C -0.50 -27.22 6.64 25.60 0.17 -27.05 16 6 H 0.06 3.24 6.81 -2.91 -0.02 3.22 16 7 C 0.01 0.56 5.30 84.66 0.45 1.00 16 8 N -0.92 -54.09 11.30 21.45 0.24 -53.85 16 9 Si 0.95 43.88 29.54 68.60 2.03 45.91 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 12 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 13 N -0.53 -22.57 3.78 -875.52 -3.31 -25.87 16 14 C 0.06 2.13 4.83 86.32 0.42 2.55 16 15 C -0.10 -3.08 5.09 30.64 0.16 -2.92 16 16 C -0.07 -1.78 1.90 -10.72 -0.02 -1.80 16 17 C -0.10 -1.91 5.29 29.85 0.16 -1.76 16 18 C 0.46 10.47 7.00 71.24 0.50 10.97 16 19 O -0.52 -14.67 9.50 21.96 0.21 -14.46 16 20 O -0.36 -7.29 9.89 -51.33 -0.51 -7.80 16 21 C 0.11 1.82 1.13 -10.79 -0.01 1.80 16 22 C -0.18 -3.12 8.37 71.98 0.60 -2.51 16 23 C -0.14 -1.50 8.85 71.98 0.64 -0.87 16 24 C -0.18 -3.21 8.37 71.98 0.60 -2.61 16 25 C -0.10 -2.64 5.38 30.64 0.16 -2.47 16 26 C 0.06 2.38 5.27 86.32 0.45 2.83 16 27 H 0.05 2.18 7.18 -2.39 -0.02 2.16 16 28 H 0.03 1.38 8.14 -2.38 -0.02 1.36 16 29 H 0.04 1.89 7.15 -2.38 -0.02 1.88 16 30 H 0.02 1.06 6.36 -2.39 -0.02 1.04 16 31 H 0.06 3.45 6.00 -2.39 -0.01 3.44 16 32 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 33 H 0.07 2.61 5.59 -2.39 -0.01 2.59 16 34 H 0.00 -0.10 8.14 -2.38 -0.02 -0.12 16 35 H 0.07 2.18 6.05 -2.38 -0.01 2.17 16 36 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.06 1.69 7.95 -2.39 -0.02 1.67 16 38 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.12 1.91 8.14 -2.38 -0.02 1.89 16 40 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.06 1.36 5.89 -2.39 -0.01 1.35 16 43 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 45 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 46 H 0.06 1.40 5.89 -2.39 -0.01 1.39 16 47 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 49 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 50 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 51 H 0.00 -0.03 8.14 -2.38 -0.02 -0.05 16 52 H 0.07 2.80 6.39 -2.39 -0.02 2.78 16 Total: -1.00 -65.11 384.70 4.72 -60.40 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: 0.87 Total: 16.19 kcal Atomic # 6 Polarization: -25.69 SS G_CDS: 5.18 Total: -20.51 kcal Atomic # 7 Polarization: -76.66 SS G_CDS: -3.06 Total: -79.72 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.30 Total: -22.26 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -65.11 4.72 -60.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255176085.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.854 kcal (2) G-P(sol) polarization free energy of solvation -65.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds