Wall clock time and date at job start Fri Apr 10 2020 22:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47258 * 2 1 4 4 H 1.08997 * 109.47117 * 303.20844 * 3 2 1 5 5 C 1.50702 * 109.47524 * 183.20731 * 3 2 1 6 6 H 1.07993 * 120.00418 * 240.00503 * 5 3 2 7 7 C 1.37882 * 119.99616 * 60.00217 * 5 3 2 8 8 N 1.31510 * 120.00041 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99893 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47163 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47281 * 119.99653 * 9 7 5 12 12 H 1.48495 * 109.47189 * 239.99830 * 9 7 5 13 13 N 1.46906 * 109.47116 * 63.20819 * 3 2 1 14 14 C 1.46851 * 110.99565 * 66.78806 * 13 3 2 15 15 C 1.53040 * 109.51934 * 185.83766 * 14 13 3 16 16 C 1.53109 * 109.28106 * 300.82625 * 15 14 13 17 17 C 1.53001 * 109.52243 * 177.56147 * 16 15 14 18 18 C 1.50703 * 109.47236 * 174.99743 * 17 16 15 19 19 O 1.20826 * 120.00010 * 0.02562 * 18 17 16 20 20 O 1.34228 * 120.00009 * 179.97438 * 18 17 16 21 21 C 1.45203 * 116.99820 * 179.97438 * 20 18 17 22 22 C 1.53006 * 109.47173 * 60.00232 * 21 20 18 23 23 C 1.53004 * 109.46933 * 180.02562 * 21 20 18 24 24 C 1.52992 * 109.47365 * 300.00063 * 21 20 18 25 25 C 1.53120 * 109.16367 * 57.65242 * 16 15 14 26 26 C 1.46838 * 111.00206 * 190.99976 * 13 3 2 27 27 H 1.09002 * 109.47346 * 64.77595 * 1 2 3 28 28 H 1.08999 * 109.47168 * 184.77221 * 1 2 3 29 29 H 1.09000 * 109.47096 * 304.77589 * 1 2 3 30 30 H 1.08998 * 109.47084 * 240.00325 * 2 1 3 31 31 H 1.09004 * 109.47382 * 120.00473 * 2 1 3 32 32 H 0.97002 * 120.00140 * 180.02562 * 8 7 5 33 33 H 1.08998 * 109.45828 * 65.82678 * 14 13 3 34 34 H 1.08998 * 109.46513 * 305.85368 * 14 13 3 35 35 H 1.09004 * 109.49893 * 60.76505 * 15 14 13 36 36 H 1.08999 * 109.50075 * 180.87759 * 15 14 13 37 37 H 1.09007 * 109.52457 * 297.74355 * 16 15 14 38 38 H 1.08995 * 109.46913 * 294.99318 * 17 16 15 39 39 H 1.08998 * 109.47440 * 54.99798 * 17 16 15 40 40 H 1.09003 * 109.46961 * 59.99775 * 22 21 20 41 41 H 1.08999 * 109.47167 * 179.97438 * 22 21 20 42 42 H 1.08996 * 109.47264 * 299.99982 * 22 21 20 43 43 H 1.08993 * 109.47034 * 60.00136 * 23 21 20 44 44 H 1.08999 * 109.47081 * 180.02562 * 23 21 20 45 45 H 1.08999 * 109.47301 * 299.99717 * 23 21 20 46 46 H 1.09007 * 109.47226 * 60.00017 * 24 21 20 47 47 H 1.08997 * 109.47406 * 179.97438 * 24 21 20 48 48 H 1.09000 * 109.47578 * 300.00268 * 24 21 20 49 49 H 1.09006 * 109.50301 * 182.40581 * 25 16 15 50 50 H 1.09002 * 109.49873 * 62.28961 * 25 16 15 51 51 H 1.09009 * 109.46398 * 294.18037 * 26 13 3 52 52 H 1.09001 * 109.46319 * 54.14646 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6305 1.9726 -0.8598 5 6 3.5449 1.4433 -0.0795 6 1 4.1271 1.8959 0.7094 7 6 4.1785 0.8660 -1.1595 8 7 3.4695 0.3143 -2.1200 9 14 6.0439 0.8663 -1.2578 10 1 6.6025 1.5440 -0.0603 11 1 6.5371 -0.5333 -1.3102 12 1 6.4750 1.5892 -2.4812 13 7 1.6146 2.1123 1.2364 14 6 2.2763 1.5240 2.4079 15 6 1.7034 2.1446 3.6841 16 6 1.9277 3.6589 3.6546 17 6 1.3033 4.2926 4.8994 18 6 1.6299 5.7634 4.9320 19 8 2.2936 6.2546 4.0498 20 8 1.1826 6.5281 5.9404 21 6 1.5361 7.9360 5.9070 22 6 0.9797 8.5715 4.6312 23 6 0.9424 8.6400 7.1289 24 6 3.0591 8.0801 5.9261 25 6 1.2702 4.2401 2.3999 26 6 1.8557 3.5588 1.1610 27 1 -0.3634 0.4379 -0.9297 28 1 -0.3633 -1.0241 0.0855 29 1 -0.3633 0.5861 0.8441 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.9152 -0.0921 -2.8797 33 1 3.3471 1.7211 2.3572 34 1 2.1054 0.4475 2.4192 35 1 0.6351 1.9360 3.7423 36 1 2.2057 1.7191 4.5529 37 1 2.9973 3.8685 3.6358 38 1 0.2217 4.1612 4.8702 39 1 1.7038 3.8117 5.7918 40 1 -0.1054 8.4688 4.6176 41 1 1.2446 9.6285 4.6064 42 1 1.4029 8.0699 3.7610 43 1 1.3392 8.1873 8.0374 44 1 1.2074 9.6970 7.1036 45 1 -0.1427 8.5375 7.1157 46 1 3.4825 7.5784 5.0559 47 1 3.3245 9.1369 5.9006 48 1 3.4556 7.6274 6.8349 49 1 1.4630 5.3118 2.3512 50 1 0.1951 4.0645 2.4380 51 1 2.9285 3.7464 1.1161 52 1 1.3793 3.9602 0.2665 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255176086.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:40:45 Heat of formation + Delta-G solvation = -107.156840 kcal Electronic energy + Delta-G solvation = -27670.033334 eV Core-core repulsion = 24054.758649 eV Total energy + Delta-G solvation = -3615.274684 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.95857 -38.66843 -37.11774 -35.05277 -34.22635 -32.36190 -31.18820 -30.08433 -28.55170 -27.64878 -27.60148 -26.09431 -23.66592 -22.70192 -22.28326 -21.08706 -19.62882 -19.42055 -18.87731 -17.14837 -16.57446 -16.28274 -16.09783 -15.29362 -14.65785 -14.42809 -14.34215 -14.03717 -13.92601 -13.68180 -13.34612 -13.01830 -12.84076 -12.68093 -12.44138 -12.42250 -12.12749 -12.10625 -11.98000 -11.84443 -11.58638 -11.40356 -11.35978 -11.23279 -11.07320 -10.82975 -10.63497 -10.57430 -10.45465 -10.30392 -10.28530 -10.00150 -9.77025 -9.64942 -9.55167 -9.16080 -8.98969 -8.32174 -7.02025 -5.94458 -4.07456 2.25730 2.61781 3.27951 3.36627 3.40385 4.43049 4.47724 4.52515 4.60319 4.68819 4.88385 5.00873 5.18684 5.22304 5.29673 5.30065 5.32511 5.44342 5.49777 5.60627 5.61878 5.63017 5.66860 5.74687 5.92338 5.93645 6.04776 6.09395 6.16624 6.24727 6.32361 6.36327 6.44096 6.52722 6.57994 6.62262 6.66332 6.72148 6.81381 6.87124 7.00905 7.17887 7.24566 7.43897 7.67390 7.82054 7.86141 8.05973 8.22806 8.40908 8.55858 9.03857 9.60004 11.04486 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.019384 B = 0.003164 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.109252 B = 8847.164815 C = 9592.373343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.109 4.109 3 C 0.213 3.787 4 H 0.036 0.964 5 C -0.540 4.540 6 H 0.057 0.943 7 C 0.067 3.933 8 N -0.886 5.886 9 Si 0.885 3.115 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.534 5.534 14 C 0.063 3.937 15 C -0.110 4.110 16 C -0.074 4.074 17 C -0.109 4.109 18 C 0.462 3.538 19 O -0.494 6.494 20 O -0.357 6.357 21 C 0.116 3.884 22 C -0.183 4.183 23 C -0.140 4.140 24 C -0.183 4.183 25 C -0.114 4.114 26 C 0.067 3.933 27 H 0.036 0.964 28 H 0.023 0.977 29 H 0.050 0.950 30 H 0.090 0.910 31 H 0.032 0.968 32 H 0.260 0.740 33 H 0.037 0.963 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.074 0.926 38 H 0.103 0.897 39 H 0.100 0.900 40 H 0.060 0.940 41 H 0.068 0.932 42 H 0.086 0.914 43 H 0.065 0.935 44 H 0.076 0.924 45 H 0.066 0.934 46 H 0.085 0.915 47 H 0.069 0.931 48 H 0.059 0.941 49 H 0.070 0.930 50 H 0.058 0.942 51 H 0.033 0.967 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.046 12.141 17.070 21.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.148 4.148 3 C 0.107 3.893 4 H 0.054 0.946 5 C -0.579 4.579 6 H 0.075 0.925 7 C -0.135 4.135 8 N -0.525 5.525 9 Si 0.713 3.287 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.258 5.258 14 C -0.065 4.065 15 C -0.148 4.148 16 C -0.093 4.093 17 C -0.147 4.147 18 C 0.305 3.695 19 O -0.381 6.381 20 O -0.275 6.275 21 C 0.080 3.920 22 C -0.240 4.240 23 C -0.197 4.197 24 C -0.240 4.240 25 C -0.152 4.152 26 C -0.062 4.062 27 H 0.056 0.944 28 H 0.043 0.957 29 H 0.069 0.931 30 H 0.108 0.892 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.055 0.945 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.121 0.879 39 H 0.118 0.882 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.105 0.895 43 H 0.084 0.916 44 H 0.095 0.905 45 H 0.085 0.915 46 H 0.104 0.896 47 H 0.088 0.912 48 H 0.078 0.922 49 H 0.088 0.912 50 H 0.076 0.924 51 H 0.052 0.948 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.331 12.166 16.681 21.596 hybrid contribution 2.059 0.219 -0.277 2.089 sum -4.272 12.386 16.405 20.995 Atomic orbital electron populations 1.21718 0.98929 0.98401 1.00579 1.21578 0.92161 0.99228 1.01815 1.19251 0.92708 0.91068 0.86282 0.94598 1.21808 0.92868 1.37212 1.06017 0.92480 1.24909 0.97797 0.95150 0.95617 1.69886 1.34754 1.38076 1.09787 0.86650 0.86446 0.77648 0.77933 1.19968 1.21041 1.21076 1.62395 1.57133 1.01970 1.04307 1.21859 0.96646 0.98735 0.89298 1.21691 1.01505 0.93411 0.98225 1.21057 1.00392 0.95343 0.92472 1.21599 1.04075 0.87216 1.01810 1.23854 0.76414 0.90303 0.78897 1.90575 1.35954 1.74511 1.37081 1.86559 1.71079 1.21919 1.47927 1.22132 0.95363 0.77682 0.96834 1.22491 1.01511 1.01573 0.98458 1.21843 1.01728 0.99842 0.96298 1.22487 0.94361 1.03197 1.03981 1.21778 0.99508 0.99731 0.94136 1.21783 0.98629 0.89619 0.96177 0.94438 0.95736 0.93051 0.89150 0.94960 0.93034 0.94487 0.91210 0.91660 0.92597 0.90760 0.87915 0.88206 0.92066 0.91261 0.89525 0.91591 0.90529 0.91542 0.89597 0.91238 0.92152 0.91180 0.92356 0.94838 0.92125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.85 37.16 0.37 -2.47 16 2 C -0.11 -2.59 5.14 -26.73 -0.14 -2.73 16 3 C 0.21 5.25 1.72 -68.86 -0.12 5.13 16 4 H 0.04 0.99 7.97 -51.93 -0.41 0.58 16 5 C -0.54 -14.50 7.24 -34.44 -0.25 -14.75 16 6 H 0.06 1.56 5.84 -52.49 -0.31 1.25 16 7 C 0.07 1.85 5.30 -17.82 -0.09 1.75 16 8 N -0.89 -25.08 11.30 55.43 0.63 -24.46 16 9 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 10 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 N -0.53 -11.15 3.89 -228.08 -0.89 -12.04 16 14 C 0.06 1.21 4.77 -3.83 -0.02 1.19 16 15 C -0.11 -1.63 5.38 -26.65 -0.14 -1.77 16 16 C -0.07 -1.06 1.90 -90.50 -0.17 -1.23 16 17 C -0.11 -1.23 5.29 -27.88 -0.15 -1.38 16 18 C 0.46 5.84 7.00 36.01 0.25 6.09 16 19 O -0.49 -7.36 9.50 -18.75 -0.18 -7.54 16 20 O -0.36 -4.13 9.89 -39.25 -0.39 -4.52 16 21 C 0.12 1.15 1.13 -90.62 -0.10 1.05 16 22 C -0.18 -1.82 8.37 37.16 0.31 -1.51 16 23 C -0.14 -1.01 8.85 37.16 0.33 -0.69 16 24 C -0.18 -1.81 8.37 37.15 0.31 -1.50 16 25 C -0.11 -1.83 5.09 -26.65 -0.14 -1.96 16 26 C 0.07 1.32 5.20 -3.84 -0.02 1.30 16 27 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 1.01 7.56 -51.93 -0.39 0.61 16 30 H 0.09 2.40 5.99 -51.93 -0.31 2.09 16 31 H 0.03 0.75 6.33 -51.93 -0.33 0.42 16 32 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 33 H 0.04 0.79 6.33 -51.93 -0.33 0.46 16 34 H 0.07 1.38 6.20 -51.93 -0.32 1.06 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.07 1.20 7.95 -51.92 -0.41 0.78 16 38 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.09 1.07 5.89 -51.93 -0.31 0.76 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.09 1.06 5.89 -51.92 -0.31 0.75 16 47 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.07 1.14 6.05 -51.93 -0.31 0.83 16 50 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 51 H 0.03 0.74 7.36 -51.92 -0.38 0.35 16 52 H 0.06 1.23 8.00 -51.93 -0.42 0.81 16 LS Contribution 385.69 15.07 5.81 5.81 Total: -1.00 -28.72 385.69 -9.40 -38.11 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -9.59 Total: 1.72 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: 0.23 Total: -13.45 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: -0.26 Total: -36.49 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: -0.57 Total: -12.06 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -28.72 -9.40 -38.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255176086.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.043 kcal (2) G-P(sol) polarization free energy of solvation -28.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds