Wall clock time and date at job start Fri Apr 10 2020 22:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47258 * 2 1 4 4 H 1.08997 * 109.47117 * 303.20844 * 3 2 1 5 5 C 1.50702 * 109.47524 * 183.20731 * 3 2 1 6 6 H 1.07993 * 120.00418 * 240.00503 * 5 3 2 7 7 C 1.37882 * 119.99616 * 60.00217 * 5 3 2 8 8 N 1.31510 * 120.00041 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99893 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47163 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47281 * 119.99653 * 9 7 5 12 12 H 1.48495 * 109.47189 * 239.99830 * 9 7 5 13 13 N 1.46906 * 109.47116 * 63.20819 * 3 2 1 14 14 C 1.46851 * 110.99565 * 66.78806 * 13 3 2 15 15 C 1.53040 * 109.51934 * 185.83766 * 14 13 3 16 16 C 1.53109 * 109.28106 * 300.82625 * 15 14 13 17 17 C 1.53001 * 109.52243 * 177.56147 * 16 15 14 18 18 C 1.50703 * 109.47236 * 174.99743 * 17 16 15 19 19 O 1.20826 * 120.00010 * 0.02562 * 18 17 16 20 20 O 1.34228 * 120.00009 * 179.97438 * 18 17 16 21 21 C 1.45203 * 116.99820 * 179.97438 * 20 18 17 22 22 C 1.53006 * 109.47173 * 60.00232 * 21 20 18 23 23 C 1.53004 * 109.46933 * 180.02562 * 21 20 18 24 24 C 1.52992 * 109.47365 * 300.00063 * 21 20 18 25 25 C 1.53120 * 109.16367 * 57.65242 * 16 15 14 26 26 C 1.46838 * 111.00206 * 190.99976 * 13 3 2 27 27 H 1.09002 * 109.47346 * 64.77595 * 1 2 3 28 28 H 1.08999 * 109.47168 * 184.77221 * 1 2 3 29 29 H 1.09000 * 109.47096 * 304.77589 * 1 2 3 30 30 H 1.08998 * 109.47084 * 240.00325 * 2 1 3 31 31 H 1.09004 * 109.47382 * 120.00473 * 2 1 3 32 32 H 0.97002 * 120.00140 * 180.02562 * 8 7 5 33 33 H 1.08998 * 109.45828 * 65.82678 * 14 13 3 34 34 H 1.08998 * 109.46513 * 305.85368 * 14 13 3 35 35 H 1.09004 * 109.49893 * 60.76505 * 15 14 13 36 36 H 1.08999 * 109.50075 * 180.87759 * 15 14 13 37 37 H 1.09007 * 109.52457 * 297.74355 * 16 15 14 38 38 H 1.08995 * 109.46913 * 294.99318 * 17 16 15 39 39 H 1.08998 * 109.47440 * 54.99798 * 17 16 15 40 40 H 1.09003 * 109.46961 * 59.99775 * 22 21 20 41 41 H 1.08999 * 109.47167 * 179.97438 * 22 21 20 42 42 H 1.08996 * 109.47264 * 299.99982 * 22 21 20 43 43 H 1.08993 * 109.47034 * 60.00136 * 23 21 20 44 44 H 1.08999 * 109.47081 * 180.02562 * 23 21 20 45 45 H 1.08999 * 109.47301 * 299.99717 * 23 21 20 46 46 H 1.09007 * 109.47226 * 60.00017 * 24 21 20 47 47 H 1.08997 * 109.47406 * 179.97438 * 24 21 20 48 48 H 1.09000 * 109.47578 * 300.00268 * 24 21 20 49 49 H 1.09006 * 109.50301 * 182.40581 * 25 16 15 50 50 H 1.09002 * 109.49873 * 62.28961 * 25 16 15 51 51 H 1.09009 * 109.46398 * 294.18037 * 26 13 3 52 52 H 1.09001 * 109.46319 * 54.14646 * 26 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6305 1.9726 -0.8598 5 6 3.5449 1.4433 -0.0795 6 1 4.1271 1.8959 0.7094 7 6 4.1785 0.8660 -1.1595 8 7 3.4695 0.3143 -2.1200 9 14 6.0439 0.8663 -1.2578 10 1 6.6025 1.5440 -0.0603 11 1 6.5371 -0.5333 -1.3102 12 1 6.4750 1.5892 -2.4812 13 7 1.6146 2.1123 1.2364 14 6 2.2763 1.5240 2.4079 15 6 1.7034 2.1446 3.6841 16 6 1.9277 3.6589 3.6546 17 6 1.3033 4.2926 4.8994 18 6 1.6299 5.7634 4.9320 19 8 2.2936 6.2546 4.0498 20 8 1.1826 6.5281 5.9404 21 6 1.5361 7.9360 5.9070 22 6 0.9797 8.5715 4.6312 23 6 0.9424 8.6400 7.1289 24 6 3.0591 8.0801 5.9261 25 6 1.2702 4.2401 2.3999 26 6 1.8557 3.5588 1.1610 27 1 -0.3634 0.4379 -0.9297 28 1 -0.3633 -1.0241 0.0855 29 1 -0.3633 0.5861 0.8441 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.9152 -0.0921 -2.8797 33 1 3.3471 1.7211 2.3572 34 1 2.1054 0.4475 2.4192 35 1 0.6351 1.9360 3.7423 36 1 2.2057 1.7191 4.5529 37 1 2.9973 3.8685 3.6358 38 1 0.2217 4.1612 4.8702 39 1 1.7038 3.8117 5.7918 40 1 -0.1054 8.4688 4.6176 41 1 1.2446 9.6285 4.6064 42 1 1.4029 8.0699 3.7610 43 1 1.3392 8.1873 8.0374 44 1 1.2074 9.6970 7.1036 45 1 -0.1427 8.5375 7.1157 46 1 3.4825 7.5784 5.0559 47 1 3.3245 9.1369 5.9006 48 1 3.4556 7.6274 6.8349 49 1 1.4630 5.3118 2.3512 50 1 0.1951 4.0645 2.4380 51 1 2.9285 3.7464 1.1161 52 1 1.3793 3.9602 0.2665 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255176086.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:40:44 Heat of formation + Delta-G solvation = -121.621169 kcal Electronic energy + Delta-G solvation = -27670.660554 eV Core-core repulsion = 24054.758649 eV Total energy + Delta-G solvation = -3615.901905 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.89337 -40.12815 -38.19538 -36.59239 -35.05057 -34.18315 -32.92943 -31.53626 -29.93983 -28.37170 -28.27561 -27.93422 -25.27703 -24.25450 -23.66709 -22.31087 -21.04115 -20.53621 -20.47830 -18.39591 -17.91308 -17.40522 -17.12846 -17.11145 -16.17947 -15.62151 -15.55434 -15.38951 -15.08543 -14.87608 -14.75016 -14.54346 -14.40319 -13.85476 -13.51844 -13.33166 -13.29090 -13.19942 -13.05879 -12.95039 -12.88985 -12.83648 -12.80388 -12.62559 -12.40772 -12.32688 -12.15531 -12.07852 -11.92895 -11.71874 -11.55400 -11.50134 -11.32977 -11.14900 -11.07279 -10.89413 -10.62615 -10.42105 -8.88438 -8.03380 -6.26152 1.32014 1.32457 1.35481 1.45204 1.78006 2.38095 3.13669 3.46433 3.65950 3.78639 3.81013 3.85964 3.91892 3.98097 4.16198 4.45194 4.50552 4.55732 4.60110 4.60374 4.65876 4.72168 4.75497 4.76739 4.79670 4.82784 4.86145 4.89418 4.90510 4.95455 5.06107 5.08392 5.10465 5.16171 5.22474 5.26713 5.28309 5.32493 5.33153 5.37311 5.46191 5.54803 5.56774 5.68458 5.69278 5.82499 6.11085 6.23138 6.41530 6.74267 6.93705 6.97176 7.44586 8.90940 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.019384 B = 0.003164 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.109252 B = 8847.164815 C = 9592.373343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.103 4.103 3 C 0.218 3.782 4 H -0.002 1.002 5 C -0.549 4.549 6 H 0.046 0.954 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.943 3.057 10 H -0.276 1.276 11 H -0.276 1.276 12 H -0.282 1.282 13 N -0.525 5.525 14 C 0.062 3.938 15 C -0.099 4.099 16 C -0.069 4.069 17 C -0.101 4.101 18 C 0.460 3.540 19 O -0.524 6.524 20 O -0.357 6.357 21 C 0.106 3.894 22 C -0.181 4.181 23 C -0.135 4.135 24 C -0.181 4.181 25 C -0.101 4.101 26 C 0.068 3.932 27 H 0.029 0.971 28 H 0.047 0.953 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.033 0.967 32 H 0.261 0.739 33 H 0.008 0.992 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.051 0.949 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.065 0.935 41 H 0.086 0.914 42 H 0.057 0.943 43 H 0.070 0.930 44 H 0.095 0.905 45 H 0.070 0.930 46 H 0.056 0.944 47 H 0.086 0.914 48 H 0.065 0.935 49 H 0.066 0.934 50 H 0.073 0.927 51 H 0.001 0.999 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.117 12.587 19.949 24.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.142 4.142 3 C 0.111 3.889 4 H 0.016 0.984 5 C -0.589 4.589 6 H 0.064 0.936 7 C -0.179 4.179 8 N -0.550 5.550 9 Si 0.770 3.230 10 H -0.201 1.201 11 H -0.202 1.202 12 H -0.208 1.208 13 N -0.248 5.248 14 C -0.066 4.066 15 C -0.136 4.136 16 C -0.087 4.087 17 C -0.138 4.138 18 C 0.305 3.695 19 O -0.413 6.413 20 O -0.274 6.274 21 C 0.071 3.929 22 C -0.238 4.238 23 C -0.192 4.192 24 C -0.238 4.238 25 C -0.139 4.139 26 C -0.060 4.060 27 H 0.048 0.952 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.026 0.974 34 H 0.083 0.917 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.069 0.931 38 H 0.145 0.855 39 H 0.146 0.854 40 H 0.084 0.916 41 H 0.105 0.895 42 H 0.076 0.924 43 H 0.089 0.911 44 H 0.113 0.887 45 H 0.089 0.911 46 H 0.075 0.925 47 H 0.105 0.895 48 H 0.084 0.916 49 H 0.084 0.916 50 H 0.091 0.909 51 H 0.020 0.980 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.412 12.617 19.584 24.447 hybrid contribution 2.415 0.142 -1.197 2.699 sum -4.997 12.758 18.387 22.931 Atomic orbital electron populations 1.21576 0.96109 1.00039 1.00633 1.21403 0.94618 0.97866 1.00268 1.19040 0.91375 0.91701 0.86814 0.98435 1.22022 0.94255 1.36837 1.05738 0.93627 1.25591 1.01754 0.95054 0.95452 1.70005 1.36189 1.38643 1.10171 0.85734 0.81740 0.77846 0.77681 1.20069 1.20184 1.20789 1.62389 1.56715 1.02207 1.03533 1.21926 0.95176 0.98802 0.90697 1.21616 1.02540 0.93103 0.96363 1.20918 0.99162 0.95427 0.93239 1.21536 1.05281 0.86123 1.00855 1.24143 0.75800 0.90972 0.78607 1.90592 1.37308 1.75182 1.38244 1.86550 1.70781 1.22812 1.47296 1.22423 0.95469 0.77032 0.98022 1.22461 1.01563 1.02345 0.97449 1.21856 1.01833 1.00582 0.94923 1.22456 0.94476 1.04049 1.02804 1.21654 1.00112 0.99045 0.93049 1.21791 0.96805 0.89463 0.97984 0.95181 0.93417 0.91956 0.92235 0.94830 0.92946 0.97407 0.91750 0.89845 0.89704 0.93078 0.85543 0.85360 0.91623 0.89536 0.92351 0.91092 0.88655 0.91095 0.92465 0.89506 0.91639 0.91558 0.90850 0.98036 0.93535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.04 9.85 71.98 0.71 -4.34 16 2 C -0.10 -4.96 5.14 30.59 0.16 -4.80 16 3 C 0.22 11.16 1.72 44.17 0.08 11.23 16 4 H 0.00 -0.13 7.97 -2.39 -0.02 -0.15 16 5 C -0.55 -30.70 7.24 25.60 0.19 -30.51 16 6 H 0.05 2.61 5.84 -2.91 -0.02 2.59 16 7 C 0.02 1.19 5.30 84.66 0.45 1.64 16 8 N -0.91 -53.08 11.30 21.45 0.24 -52.84 16 9 Si 0.94 44.95 29.54 68.60 2.03 46.98 16 10 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 13 N -0.52 -22.31 3.89 -875.51 -3.41 -25.72 16 14 C 0.06 2.38 4.77 86.33 0.41 2.79 16 15 C -0.10 -2.65 5.38 30.64 0.16 -2.48 16 16 C -0.07 -1.86 1.90 -10.72 -0.02 -1.88 16 17 C -0.10 -1.94 5.29 29.85 0.16 -1.79 16 18 C 0.46 10.93 7.00 71.24 0.50 11.42 16 19 O -0.52 -15.67 9.50 21.96 0.21 -15.46 16 20 O -0.36 -7.51 9.89 -51.39 -0.51 -8.02 16 21 C 0.11 1.91 1.13 -10.79 -0.01 1.90 16 22 C -0.18 -3.39 8.37 71.98 0.60 -2.79 16 23 C -0.14 -1.56 8.85 71.98 0.64 -0.93 16 24 C -0.18 -3.36 8.37 71.98 0.60 -2.76 16 25 C -0.10 -3.20 5.09 30.65 0.16 -3.04 16 26 C 0.07 2.82 5.20 86.33 0.45 3.27 16 27 H 0.03 1.21 8.14 -2.39 -0.02 1.20 16 28 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.06 2.34 7.56 -2.39 -0.02 2.32 16 30 H 0.06 3.25 5.99 -2.39 -0.01 3.24 16 31 H 0.03 1.57 6.33 -2.39 -0.02 1.55 16 32 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 33 H 0.01 0.34 6.33 -2.39 -0.02 0.32 16 34 H 0.06 2.51 6.20 -2.39 -0.01 2.49 16 35 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 36 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.05 1.64 7.95 -2.38 -0.02 1.62 16 38 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.06 1.45 5.89 -2.39 -0.01 1.43 16 43 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.06 1.42 5.89 -2.38 -0.01 1.40 16 47 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 49 H 0.07 2.18 6.05 -2.38 -0.01 2.17 16 50 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 51 H 0.00 0.06 7.36 -2.38 -0.02 0.04 16 52 H 0.05 2.00 8.00 -2.39 -0.02 1.98 16 Total: -1.00 -65.57 385.69 4.65 -60.91 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 0.87 Total: 17.20 kcal Atomic # 6 Polarization: -28.29 SS G_CDS: 5.22 Total: -23.06 kcal Atomic # 7 Polarization: -75.39 SS G_CDS: -3.16 Total: -78.55 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.30 Total: -23.48 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -65.57 4.65 -60.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255176086.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.707 kcal (2) G-P(sol) polarization free energy of solvation -65.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds