Wall clock time and date at job start Fri Apr 10 2020 22:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45198 * 109.47178 * 2 1 4 4 C 1.34229 * 117.00120 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99701 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00240 * 179.97438 * 4 3 2 7 7 C 1.52995 * 109.52320 * 179.87395 * 6 4 3 8 8 C 1.53000 * 109.47520 * 300.12860 * 7 6 4 9 9 C 1.53002 * 109.47265 * 60.12915 * 7 6 4 10 10 C 1.53124 * 109.52096 * 59.68571 * 6 4 3 11 11 C 1.53035 * 109.27475 * 297.74717 * 10 6 4 12 12 N 1.46846 * 109.52744 * 300.82106 * 11 10 6 13 13 C 1.46898 * 111.00056 * 185.84176 * 12 11 10 14 14 H 1.09002 * 109.47027 * 54.99846 * 13 12 11 15 15 C 1.50700 * 109.47051 * 295.00223 * 13 12 11 16 16 H 1.08000 * 120.00368 * 359.97438 * 15 13 12 17 17 C 1.37884 * 120.00057 * 179.97438 * 15 13 12 18 18 N 1.31515 * 119.99952 * 0.02562 * 17 15 13 19 19 Si 1.86802 * 119.99890 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47394 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46626 * 120.00179 * 19 17 15 22 22 H 1.48502 * 109.47161 * 239.99886 * 19 17 15 23 23 C 1.52998 * 109.47306 * 175.00021 * 13 12 11 24 24 C 1.53001 * 109.47126 * 295.00256 * 23 13 12 25 25 C 1.46846 * 111.19780 * 61.74478 * 12 11 10 26 26 C 1.53032 * 109.52443 * 298.25976 * 25 12 11 27 27 H 1.08994 * 109.47353 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47051 * 299.99956 * 1 2 3 29 29 H 1.09000 * 109.47195 * 59.99809 * 1 2 3 30 30 H 1.08999 * 109.47051 * 240.00044 * 2 1 3 31 31 H 1.09000 * 109.47195 * 120.00191 * 2 1 3 32 32 H 1.08995 * 109.47066 * 180.12442 * 7 6 4 33 33 H 1.09004 * 109.47141 * 59.99986 * 8 7 6 34 34 H 1.09002 * 109.47458 * 180.02562 * 8 7 6 35 35 H 1.09000 * 109.46578 * 299.99966 * 8 7 6 36 36 H 1.09004 * 109.46985 * 299.99762 * 9 7 6 37 37 H 1.08998 * 109.47126 * 59.99648 * 9 7 6 38 38 H 1.09002 * 109.47649 * 180.02562 * 9 7 6 39 39 H 1.08993 * 109.50112 * 177.81111 * 10 6 4 40 40 H 1.08992 * 109.50394 * 57.68859 * 10 6 4 41 41 H 1.09008 * 109.45841 * 180.80263 * 11 10 6 42 42 H 1.09003 * 109.46290 * 60.84246 * 11 10 6 43 43 H 0.96999 * 120.00010 * 179.97438 * 18 17 15 44 44 H 1.09008 * 109.46637 * 55.00060 * 23 13 12 45 45 H 1.08998 * 109.47336 * 174.99540 * 23 13 12 46 46 H 1.09001 * 109.47019 * 180.02562 * 24 23 13 47 47 H 1.09000 * 109.46870 * 299.99488 * 24 23 13 48 48 H 1.08998 * 109.47121 * 59.99679 * 24 23 13 49 49 H 1.09009 * 109.46169 * 58.27021 * 25 12 11 50 50 H 1.08995 * 109.46669 * 178.25121 * 25 12 11 51 51 H 1.09001 * 109.50949 * 179.12117 * 26 25 12 52 52 H 1.09000 * 109.50361 * 299.23864 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9374 0.0000 7 6 5.4487 2.8587 0.0039 8 6 5.9177 2.1111 1.2538 9 6 5.9243 2.1131 -1.2447 10 6 3.4426 3.6894 1.2452 11 6 1.9181 3.8167 1.2041 12 7 1.5185 4.5398 -0.0099 13 6 0.0731 4.8021 -0.0146 14 1 -0.2035 5.3291 0.8985 15 6 -0.6743 3.4954 -0.0865 16 1 -0.1300 2.5634 -0.1252 17 6 -2.0530 3.4898 -0.1028 18 7 -2.7158 4.6247 -0.0562 19 14 -2.9794 1.8701 -0.1926 20 1 -2.0092 0.7466 -0.2354 21 1 -3.8468 1.7291 1.0045 22 1 -3.8186 1.8471 -1.4175 23 6 -0.2852 5.6620 -1.2283 24 6 0.3750 7.0356 -1.0929 25 6 1.9254 3.8128 -1.2191 26 6 3.4501 3.6853 -1.2505 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 5.8644 3.8662 0.0058 33 1 5.5020 1.1035 1.2519 34 1 7.0063 2.0554 1.2568 35 1 5.5790 2.6423 2.1433 36 1 5.5085 1.1055 -1.2466 37 1 5.5901 2.6457 -2.1351 38 1 7.0128 2.0566 -1.2417 39 1 3.8903 4.6829 1.2645 40 1 3.7379 3.1391 2.1384 41 1 1.5757 4.3642 2.0823 42 1 1.4707 2.8228 1.1988 43 1 -3.6857 4.6208 -0.0680 44 1 0.0713 5.1754 -2.1363 45 1 -1.3672 5.7825 -1.2815 46 1 0.1193 7.6483 -1.9574 47 1 0.0185 7.5221 -0.1850 48 1 1.4570 6.9150 -1.0397 49 1 1.4779 2.8188 -1.2131 50 1 1.5884 4.3574 -2.1010 51 1 3.7509 3.1321 -2.1402 52 1 3.8980 4.6788 -1.2704 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255178636.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:40:48 Heat of formation + Delta-G solvation = -86.762481 kcal Electronic energy + Delta-G solvation = -30018.246451 eV Core-core repulsion = 26403.856133 eV Total energy + Delta-G solvation = -3614.390319 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.10649 -38.16764 -37.13422 -35.43916 -33.33731 -31.62083 -31.33258 -30.56112 -29.90087 -26.97869 -26.57676 -24.47409 -23.75637 -22.59841 -22.12759 -21.62620 -20.11979 -19.38471 -18.87735 -17.23666 -16.41737 -16.28557 -15.43342 -14.92559 -14.46903 -14.36134 -14.11508 -14.02871 -13.52503 -13.39549 -13.39145 -13.11836 -12.75061 -12.35638 -12.31381 -12.11241 -12.10000 -11.91413 -11.77060 -11.53566 -11.30122 -11.26171 -11.05872 -10.97504 -10.89032 -10.86018 -10.66630 -10.58213 -10.23564 -10.01199 -9.84850 -9.69440 -9.58923 -9.49384 -9.48000 -9.16085 -8.92584 -8.28246 -6.95439 -5.89045 -4.00971 2.52649 3.02628 3.28313 3.35054 3.39904 4.45790 4.64518 4.87070 4.97803 5.11274 5.22696 5.25217 5.32887 5.34356 5.36583 5.53949 5.56450 5.67000 5.75705 5.83055 5.95828 5.98818 6.02514 6.06377 6.08754 6.15452 6.21940 6.23425 6.26142 6.27659 6.36270 6.40490 6.50064 6.51640 6.60209 6.61134 6.69391 6.77430 6.93609 6.96080 7.15108 7.18495 7.25847 7.42695 7.72789 7.85446 8.08669 8.15251 8.27706 8.45716 8.58426 9.12496 9.65710 11.09866 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.014767 B = 0.006383 C = 0.004926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.678697 B = 4385.441404 C = 5682.810851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.057 3.943 3 O -0.321 6.321 4 C 0.473 3.527 5 O -0.516 6.516 6 C -0.043 4.043 7 C -0.071 4.071 8 C -0.162 4.162 9 C -0.162 4.162 10 C -0.105 4.105 11 C 0.051 3.949 12 N -0.529 5.529 13 C 0.214 3.786 14 H 0.035 0.965 15 C -0.538 4.538 16 H 0.079 0.921 17 C 0.065 3.935 18 N -0.891 5.891 19 Si 0.855 3.145 20 H -0.240 1.240 21 H -0.291 1.291 22 H -0.291 1.291 23 C -0.112 4.112 24 C -0.138 4.138 25 C 0.048 3.952 26 C -0.107 4.107 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.049 0.951 35 H 0.052 0.948 36 H 0.078 0.922 37 H 0.052 0.948 38 H 0.049 0.951 39 H 0.078 0.922 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.257 0.743 44 H 0.032 0.968 45 H 0.091 0.909 46 H 0.022 0.978 47 H 0.038 0.962 48 H 0.047 0.953 49 H 0.063 0.937 50 H 0.070 0.930 51 H 0.060 0.940 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.276 -4.201 -0.211 12.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.017 4.017 3 O -0.237 6.237 4 C 0.317 3.683 5 O -0.406 6.406 6 C -0.044 4.044 7 C -0.089 4.089 8 C -0.219 4.219 9 C -0.219 4.219 10 C -0.143 4.143 11 C -0.077 4.077 12 N -0.253 5.253 13 C 0.108 3.892 14 H 0.053 0.947 15 C -0.577 4.577 16 H 0.096 0.904 17 C -0.136 4.136 18 N -0.530 5.530 19 Si 0.683 3.317 20 H -0.163 1.163 21 H -0.218 1.218 22 H -0.218 1.218 23 C -0.151 4.151 24 C -0.195 4.195 25 C -0.081 4.081 26 C -0.144 4.144 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.097 0.903 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.067 0.933 44 H 0.051 0.949 45 H 0.109 0.891 46 H 0.042 0.958 47 H 0.057 0.943 48 H 0.066 0.934 49 H 0.080 0.920 50 H 0.088 0.912 51 H 0.079 0.921 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 12.510 -3.990 -0.202 13.132 hybrid contribution -1.142 -1.669 -0.039 2.022 sum 11.368 -5.659 -0.242 12.701 Atomic orbital electron populations 1.22150 0.91680 1.01869 1.05001 1.23057 0.96082 0.81267 1.01323 1.86988 1.23555 1.30653 1.82476 1.23821 0.80923 0.92243 0.71276 1.90476 1.60180 1.43567 1.46375 1.20766 0.94927 0.88994 0.99709 1.20970 0.91827 0.99849 0.96304 1.22144 1.00600 1.02419 0.96747 1.22141 1.00572 1.02417 0.96770 1.21752 0.98276 0.99882 0.94413 1.22096 0.91975 0.99370 0.94291 1.62411 1.18812 1.43990 1.00070 1.19247 0.80810 0.94288 0.94878 0.94717 1.22107 0.91563 0.94329 1.49720 0.90351 1.24920 0.97825 0.95574 0.95298 1.69896 1.07081 1.24909 1.51138 0.87261 0.80722 0.86433 0.77283 1.16345 1.21776 1.21804 1.21634 1.02657 0.92913 0.97867 1.21710 1.00480 0.98502 0.98813 1.22183 0.91603 0.99373 0.94898 1.21778 0.98545 0.99836 0.94287 0.91504 0.90834 0.90380 0.92092 0.92108 0.90425 0.90353 0.93205 0.92940 0.90372 0.92912 0.93207 0.90310 0.92053 0.92002 0.91960 0.93336 0.94924 0.89096 0.95838 0.94326 0.93388 0.91960 0.91217 0.92096 0.90360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 7.07 37.16 0.26 -2.10 16 2 C 0.06 0.86 6.19 37.16 0.23 1.09 16 3 O -0.32 -5.52 3.63 -39.26 -0.14 -5.66 16 4 C 0.47 7.65 5.89 36.01 0.21 7.87 16 5 O -0.52 -8.69 11.11 -18.75 -0.21 -8.90 16 6 C -0.04 -0.62 0.31 -155.53 -0.05 -0.67 16 7 C -0.07 -0.90 2.25 -90.62 -0.20 -1.10 16 8 C -0.16 -2.01 8.55 37.16 0.32 -1.69 16 9 C -0.16 -2.01 8.55 37.16 0.32 -1.69 16 10 C -0.11 -1.56 4.46 -26.65 -0.12 -1.68 16 11 C 0.05 0.93 4.86 -3.84 -0.02 0.91 16 12 N -0.53 -10.32 4.10 -228.08 -0.93 -11.25 16 13 C 0.21 4.96 1.75 -68.87 -0.12 4.84 16 14 H 0.03 0.92 8.08 -51.93 -0.42 0.50 16 15 C -0.54 -13.19 7.19 -34.44 -0.25 -13.44 16 16 H 0.08 1.84 3.13 -52.49 -0.16 1.67 16 17 C 0.07 1.68 5.29 -17.82 -0.09 1.59 16 18 N -0.89 -24.45 11.29 55.43 0.63 -23.83 16 19 Si 0.85 19.19 28.93 -169.99 -4.92 14.27 16 20 H -0.24 -4.72 3.16 56.52 0.18 -4.54 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 C -0.11 -2.56 5.06 -26.73 -0.14 -2.69 16 24 C -0.14 -2.73 9.80 37.16 0.36 -2.37 16 25 C 0.05 0.87 4.55 -3.84 -0.02 0.85 16 26 C -0.11 -1.59 4.45 -26.65 -0.12 -1.71 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.07 1.27 7.42 -51.93 -0.39 0.89 16 29 H 0.08 1.37 6.48 -51.93 -0.34 1.03 16 30 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 31 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.08 1.12 5.52 -51.93 -0.29 0.84 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.05 0.61 6.50 -51.93 -0.34 0.28 16 36 H 0.08 1.12 5.53 -51.93 -0.29 0.84 16 37 H 0.05 0.62 6.49 -51.93 -0.34 0.29 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.06 0.85 6.58 -51.93 -0.34 0.51 16 41 H 0.06 1.17 8.08 -51.92 -0.42 0.75 16 42 H 0.06 1.24 4.27 -51.93 -0.22 1.02 16 43 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 44 H 0.03 0.73 6.05 -51.92 -0.31 0.42 16 45 H 0.09 2.36 5.95 -51.93 -0.31 2.05 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.05 0.90 7.75 -51.93 -0.40 0.50 16 49 H 0.06 1.25 4.00 -51.92 -0.21 1.04 16 50 H 0.07 1.33 5.93 -51.93 -0.31 1.03 16 51 H 0.06 0.86 6.57 -51.93 -0.34 0.51 16 52 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 356.68 15.07 5.38 5.38 Total: -1.00 -26.29 356.68 -8.62 -34.91 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -9.00 Total: 7.07 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: 0.58 Total: -11.99 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: -0.31 Total: -35.08 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -0.35 Total: -14.56 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -4.92 Total: 14.27 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -26.29 -8.62 -34.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255178636.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.848 kcal (2) G-P(sol) polarization free energy of solvation -26.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds