Wall clock time and date at job start Fri Apr 10 2020 22:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45198 * 109.47178 * 2 1 4 4 C 1.34229 * 117.00120 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99701 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00240 * 179.97438 * 4 3 2 7 7 C 1.52995 * 109.52320 * 179.87395 * 6 4 3 8 8 C 1.53000 * 109.47520 * 300.12860 * 7 6 4 9 9 C 1.53002 * 109.47265 * 60.12915 * 7 6 4 10 10 C 1.53124 * 109.52096 * 59.68571 * 6 4 3 11 11 C 1.53035 * 109.27475 * 297.74717 * 10 6 4 12 12 N 1.46846 * 109.52744 * 300.82106 * 11 10 6 13 13 C 1.46898 * 111.00056 * 185.84176 * 12 11 10 14 14 H 1.09002 * 109.47027 * 54.99846 * 13 12 11 15 15 C 1.50700 * 109.47051 * 295.00223 * 13 12 11 16 16 H 1.08000 * 120.00368 * 359.97438 * 15 13 12 17 17 C 1.37884 * 120.00057 * 179.97438 * 15 13 12 18 18 N 1.31515 * 119.99952 * 0.02562 * 17 15 13 19 19 Si 1.86802 * 119.99890 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47394 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46626 * 120.00179 * 19 17 15 22 22 H 1.48502 * 109.47161 * 239.99886 * 19 17 15 23 23 C 1.52998 * 109.47306 * 175.00021 * 13 12 11 24 24 C 1.53001 * 109.47126 * 295.00256 * 23 13 12 25 25 C 1.46846 * 111.19780 * 61.74478 * 12 11 10 26 26 C 1.53032 * 109.52443 * 298.25976 * 25 12 11 27 27 H 1.08994 * 109.47353 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47051 * 299.99956 * 1 2 3 29 29 H 1.09000 * 109.47195 * 59.99809 * 1 2 3 30 30 H 1.08999 * 109.47051 * 240.00044 * 2 1 3 31 31 H 1.09000 * 109.47195 * 120.00191 * 2 1 3 32 32 H 1.08995 * 109.47066 * 180.12442 * 7 6 4 33 33 H 1.09004 * 109.47141 * 59.99986 * 8 7 6 34 34 H 1.09002 * 109.47458 * 180.02562 * 8 7 6 35 35 H 1.09000 * 109.46578 * 299.99966 * 8 7 6 36 36 H 1.09004 * 109.46985 * 299.99762 * 9 7 6 37 37 H 1.08998 * 109.47126 * 59.99648 * 9 7 6 38 38 H 1.09002 * 109.47649 * 180.02562 * 9 7 6 39 39 H 1.08993 * 109.50112 * 177.81111 * 10 6 4 40 40 H 1.08992 * 109.50394 * 57.68859 * 10 6 4 41 41 H 1.09008 * 109.45841 * 180.80263 * 11 10 6 42 42 H 1.09003 * 109.46290 * 60.84246 * 11 10 6 43 43 H 0.96999 * 120.00010 * 179.97438 * 18 17 15 44 44 H 1.09008 * 109.46637 * 55.00060 * 23 13 12 45 45 H 1.08998 * 109.47336 * 174.99540 * 23 13 12 46 46 H 1.09001 * 109.47019 * 180.02562 * 24 23 13 47 47 H 1.09000 * 109.46870 * 299.99488 * 24 23 13 48 48 H 1.08998 * 109.47121 * 59.99679 * 24 23 13 49 49 H 1.09009 * 109.46169 * 58.27021 * 25 12 11 50 50 H 1.08995 * 109.46669 * 178.25121 * 25 12 11 51 51 H 1.09001 * 109.50949 * 179.12117 * 26 25 12 52 52 H 1.09000 * 109.50361 * 299.23864 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9374 0.0000 7 6 5.4487 2.8587 0.0039 8 6 5.9177 2.1111 1.2538 9 6 5.9243 2.1131 -1.2447 10 6 3.4426 3.6894 1.2452 11 6 1.9181 3.8167 1.2041 12 7 1.5185 4.5398 -0.0099 13 6 0.0731 4.8021 -0.0146 14 1 -0.2035 5.3291 0.8985 15 6 -0.6743 3.4954 -0.0865 16 1 -0.1300 2.5634 -0.1252 17 6 -2.0530 3.4898 -0.1028 18 7 -2.7158 4.6247 -0.0562 19 14 -2.9794 1.8701 -0.1926 20 1 -2.0092 0.7466 -0.2354 21 1 -3.8468 1.7291 1.0045 22 1 -3.8186 1.8471 -1.4175 23 6 -0.2852 5.6620 -1.2283 24 6 0.3750 7.0356 -1.0929 25 6 1.9254 3.8128 -1.2191 26 6 3.4501 3.6853 -1.2505 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 5.8644 3.8662 0.0058 33 1 5.5020 1.1035 1.2519 34 1 7.0063 2.0554 1.2568 35 1 5.5790 2.6423 2.1433 36 1 5.5085 1.1055 -1.2466 37 1 5.5901 2.6457 -2.1351 38 1 7.0128 2.0566 -1.2417 39 1 3.8903 4.6829 1.2645 40 1 3.7379 3.1391 2.1384 41 1 1.5757 4.3642 2.0823 42 1 1.4707 2.8228 1.1988 43 1 -3.6857 4.6208 -0.0680 44 1 0.0713 5.1754 -2.1363 45 1 -1.3672 5.7825 -1.2815 46 1 0.1193 7.6483 -1.9574 47 1 0.0185 7.5221 -0.1850 48 1 1.4570 6.9150 -1.0397 49 1 1.4779 2.8188 -1.2131 50 1 1.5884 4.3574 -2.1010 51 1 3.7509 3.1321 -2.1402 52 1 3.8980 4.6788 -1.2704 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255178636.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:40:47 Heat of formation + Delta-G solvation = -99.624123 kcal Electronic energy + Delta-G solvation = -30018.804174 eV Core-core repulsion = 26403.856133 eV Total energy + Delta-G solvation = -3614.948041 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.34957 -39.57161 -38.44617 -36.85610 -34.84652 -33.37582 -32.68164 -31.87824 -31.30713 -28.33890 -27.97670 -25.96850 -25.15181 -24.10987 -23.56547 -22.83731 -21.51673 -20.59276 -20.56450 -18.56316 -18.06400 -17.68172 -17.03342 -16.37914 -15.88907 -15.61401 -15.49419 -15.32132 -15.02031 -14.74658 -14.64975 -14.53250 -14.25508 -13.80613 -13.56648 -13.45445 -13.28384 -13.26214 -13.24827 -12.96727 -12.85788 -12.67813 -12.45316 -12.40014 -12.25469 -12.12055 -12.09164 -11.91822 -11.65658 -11.48660 -11.40830 -11.23626 -11.13853 -10.94237 -10.76973 -10.69046 -10.66779 -10.28413 -8.66051 -7.84701 -6.05310 1.28530 1.43106 1.49374 1.56709 1.84817 2.54451 3.33774 3.47695 3.66995 3.73360 3.83899 4.03221 4.04399 4.10835 4.30341 4.36256 4.44008 4.52829 4.60468 4.65788 4.76862 4.77663 4.79415 4.83047 4.89865 4.92071 4.95581 4.98326 4.99283 5.00737 5.11937 5.13692 5.18108 5.19101 5.19628 5.32809 5.41184 5.44461 5.48345 5.51340 5.53500 5.63906 5.67088 5.83648 5.87427 5.92575 6.21298 6.41743 6.62883 6.87623 6.91413 7.19050 7.65215 9.08773 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.014767 B = 0.006383 C = 0.004926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.678697 B = 4385.441404 C = 5682.810851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.056 3.944 3 O -0.340 6.340 4 C 0.468 3.532 5 O -0.523 6.523 6 C -0.039 4.039 7 C -0.068 4.068 8 C -0.160 4.160 9 C -0.159 4.159 10 C -0.095 4.095 11 C 0.050 3.950 12 N -0.521 5.521 13 C 0.219 3.781 14 H -0.005 1.005 15 C -0.533 4.533 16 H 0.089 0.911 17 C 0.014 3.986 18 N -0.925 5.925 19 Si 0.901 3.099 20 H -0.199 1.199 21 H -0.304 1.304 22 H -0.304 1.304 23 C -0.107 4.107 24 C -0.125 4.125 25 C 0.050 3.950 26 C -0.098 4.098 27 H 0.096 0.904 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.094 0.906 40 H 0.073 0.927 41 H 0.048 0.952 42 H 0.046 0.954 43 H 0.251 0.749 44 H 0.033 0.967 45 H 0.056 0.944 46 H 0.040 0.960 47 H 0.028 0.972 48 H 0.061 0.939 49 H 0.045 0.955 50 H 0.059 0.941 51 H 0.073 0.927 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.060 -4.930 -0.579 15.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.018 4.018 3 O -0.256 6.256 4 C 0.314 3.686 5 O -0.413 6.413 6 C -0.040 4.040 7 C -0.086 4.086 8 C -0.216 4.216 9 C -0.216 4.216 10 C -0.133 4.133 11 C -0.078 4.078 12 N -0.245 5.245 13 C 0.112 3.888 14 H 0.013 0.987 15 C -0.573 4.573 16 H 0.107 0.893 17 C -0.184 4.184 18 N -0.566 5.566 19 Si 0.729 3.271 20 H -0.121 1.121 21 H -0.231 1.231 22 H -0.231 1.231 23 C -0.145 4.145 24 C -0.182 4.182 25 C -0.079 4.079 26 C -0.135 4.135 27 H 0.114 0.886 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.117 0.883 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.113 0.887 40 H 0.092 0.908 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.060 0.940 44 H 0.052 0.948 45 H 0.075 0.925 46 H 0.059 0.941 47 H 0.047 0.953 48 H 0.080 0.920 49 H 0.063 0.937 50 H 0.077 0.923 51 H 0.092 0.908 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 15.330 -4.742 -0.572 16.056 hybrid contribution -1.993 -1.458 0.092 2.471 sum 13.337 -6.200 -0.480 14.715 Atomic orbital electron populations 1.22110 0.92247 1.03203 1.02957 1.23119 0.95630 0.80800 1.02212 1.86974 1.24354 1.31671 1.82611 1.24180 0.80501 0.92926 0.71024 1.90487 1.60164 1.44012 1.46618 1.20829 0.96396 0.87743 0.99031 1.21009 0.89935 1.01101 0.96532 1.22100 1.01562 1.01112 0.96875 1.22097 1.01531 1.01108 0.96889 1.21671 0.95228 1.01068 0.95327 1.22102 0.94682 0.97904 0.93116 1.62356 1.16101 1.44737 1.01282 1.19012 0.83173 0.93476 0.93182 0.98668 1.22478 0.91645 0.95432 1.47701 0.89308 1.25620 0.98966 0.98154 0.95667 1.70060 1.06739 1.26828 1.52966 0.86544 0.79852 0.84904 0.75815 1.12093 1.23141 1.23130 1.21466 1.00727 0.94750 0.97607 1.21566 1.00841 0.96706 0.99132 1.22161 0.94204 0.97888 0.93598 1.21710 0.95613 1.01045 0.95175 0.88570 0.92652 0.92280 0.91161 0.91175 0.88304 0.92520 0.91614 0.92366 0.92541 0.92310 0.91620 0.88741 0.90826 0.93379 0.93637 0.94033 0.94837 0.92524 0.94071 0.95270 0.92034 0.93701 0.92279 0.90835 0.88751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.45 7.07 71.98 0.51 -3.94 16 2 C 0.06 1.63 6.19 71.98 0.45 2.07 16 3 O -0.34 -11.34 3.63 -51.41 -0.19 -11.53 16 4 C 0.47 14.33 5.89 71.24 0.42 14.75 16 5 O -0.52 -16.65 11.11 21.96 0.24 -16.41 16 6 C -0.04 -1.02 0.31 -52.85 -0.02 -1.03 16 7 C -0.07 -1.45 2.25 -10.79 -0.02 -1.47 16 8 C -0.16 -3.42 8.55 71.98 0.62 -2.81 16 9 C -0.16 -3.41 8.55 71.98 0.62 -2.80 16 10 C -0.10 -2.59 4.46 30.65 0.14 -2.46 16 11 C 0.05 1.81 4.86 86.33 0.42 2.23 16 12 N -0.52 -20.12 4.10 -875.52 -3.59 -23.71 16 13 C 0.22 10.41 1.75 44.17 0.08 10.49 16 14 H 0.00 -0.25 8.08 -2.39 -0.02 -0.27 16 15 C -0.53 -26.76 7.19 25.60 0.18 -26.58 16 16 H 0.09 4.21 3.13 -2.91 -0.01 4.20 16 17 C 0.01 0.72 5.29 84.66 0.45 1.17 16 18 N -0.92 -52.98 11.29 21.45 0.24 -52.74 16 19 Si 0.90 40.22 28.93 68.60 1.98 42.21 16 20 H -0.20 -7.48 3.16 99.48 0.31 -7.17 16 21 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 22 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 23 C -0.11 -4.97 5.06 30.59 0.15 -4.82 16 24 C -0.13 -4.90 9.80 71.98 0.71 -4.19 16 25 C 0.05 1.75 4.55 86.32 0.39 2.15 16 26 C -0.10 -2.65 4.45 30.65 0.14 -2.51 16 27 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.05 1.85 7.42 -2.39 -0.02 1.83 16 29 H 0.06 1.99 6.48 -2.39 -0.02 1.97 16 30 H 0.07 1.91 8.13 -2.39 -0.02 1.89 16 31 H 0.07 1.90 8.13 -2.39 -0.02 1.88 16 32 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.06 1.49 5.52 -2.39 -0.01 1.47 16 34 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.06 1.17 6.50 -2.39 -0.02 1.15 16 36 H 0.06 1.48 5.53 -2.39 -0.01 1.47 16 37 H 0.06 1.17 6.49 -2.39 -0.02 1.16 16 38 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.07 1.85 6.58 -2.39 -0.02 1.83 16 41 H 0.05 1.83 8.08 -2.38 -0.02 1.81 16 42 H 0.05 1.81 4.27 -2.39 -0.01 1.80 16 43 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 44 H 0.03 1.51 6.05 -2.38 -0.01 1.50 16 45 H 0.06 3.05 5.95 -2.39 -0.01 3.03 16 46 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.03 1.16 8.14 -2.39 -0.02 1.15 16 48 H 0.06 2.22 7.75 -2.39 -0.02 2.21 16 49 H 0.05 1.78 4.00 -2.38 -0.01 1.77 16 50 H 0.06 2.20 5.93 -2.39 -0.01 2.19 16 51 H 0.07 1.84 6.57 -2.39 -0.02 1.82 16 52 H 0.09 2.30 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -58.94 356.68 4.43 -54.51 By element: Atomic # 1 Polarization: 26.91 SS G_CDS: 0.51 Total: 27.42 kcal Atomic # 6 Polarization: -24.97 SS G_CDS: 5.22 Total: -19.76 kcal Atomic # 7 Polarization: -73.11 SS G_CDS: -3.34 Total: -76.45 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: 0.06 Total: -27.94 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 1.98 Total: 42.21 kcal Total: -58.94 4.43 -54.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255178636.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.112 kcal (2) G-P(sol) polarization free energy of solvation -58.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds