Wall clock time and date at job start Fri Apr 10 2020 22:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45207 * 109.46667 * 2 1 4 4 C 1.34232 * 116.99465 * 179.97438 * 3 2 1 5 5 O 1.20823 * 120.00545 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99389 * 180.02562 * 4 3 2 7 7 C 1.53007 * 109.51738 * 180.12938 * 6 4 3 8 8 C 1.52995 * 109.47284 * 59.87550 * 7 6 4 9 9 C 1.53003 * 109.46722 * 179.87451 * 7 6 4 10 10 C 1.53113 * 109.52265 * 60.00226 * 6 4 3 11 11 C 1.53030 * 109.28160 * 297.74504 * 10 6 4 12 12 N 1.46850 * 109.52341 * 300.82612 * 11 10 6 13 13 C 1.46903 * 110.99979 * 185.84051 * 12 11 10 14 14 H 1.09006 * 109.46676 * 187.52478 * 13 12 11 15 15 C 1.50697 * 109.46649 * 307.51803 * 13 12 11 16 16 H 1.07997 * 120.00447 * 359.72910 * 15 13 12 17 17 C 1.37879 * 119.99853 * 180.02562 * 15 13 12 18 18 N 1.31511 * 119.99958 * 359.72661 * 17 15 13 19 19 Si 1.86803 * 120.00118 * 179.72608 * 17 15 13 20 20 H 1.48502 * 109.47057 * 90.00028 * 19 17 15 21 21 H 1.48504 * 109.47184 * 209.99867 * 19 17 15 22 22 H 1.48501 * 109.47192 * 329.99992 * 19 17 15 23 23 C 1.52997 * 109.47620 * 67.52086 * 13 12 11 24 24 C 1.53004 * 109.46953 * 63.19889 * 23 13 12 25 25 C 1.46844 * 111.20129 * 61.73799 * 12 11 10 26 26 C 1.53043 * 109.52067 * 298.26113 * 25 12 11 27 27 H 1.08999 * 109.46840 * 60.00079 * 1 2 3 28 28 H 1.09001 * 109.46713 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47115 * 300.00257 * 1 2 3 30 30 H 1.09001 * 109.47254 * 240.00280 * 2 1 3 31 31 H 1.08992 * 109.47106 * 119.99617 * 2 1 3 32 32 H 1.08994 * 109.46875 * 299.86887 * 7 6 4 33 33 H 1.08998 * 109.47349 * 59.99495 * 8 7 6 34 34 H 1.08999 * 109.47134 * 180.02562 * 8 7 6 35 35 H 1.09001 * 109.47039 * 299.99403 * 8 7 6 36 36 H 1.08999 * 109.46770 * 179.97438 * 9 7 6 37 37 H 1.08998 * 109.46877 * 299.99872 * 9 7 6 38 38 H 1.09002 * 109.47286 * 59.99692 * 9 7 6 39 39 H 1.09011 * 109.50377 * 177.80472 * 10 6 4 40 40 H 1.08997 * 109.53615 * 57.71075 * 10 6 4 41 41 H 1.09001 * 109.46756 * 180.80607 * 11 10 6 42 42 H 1.09005 * 109.45612 * 60.83022 * 11 10 6 43 43 H 0.97003 * 120.00529 * 179.97438 * 18 17 15 44 44 H 1.08993 * 109.47379 * 183.20258 * 23 13 12 45 45 H 1.08999 * 109.46787 * 303.20368 * 23 13 12 46 46 H 1.09004 * 109.46876 * 64.74526 * 24 23 13 47 47 H 1.08998 * 109.46551 * 184.73865 * 24 23 13 48 48 H 1.08998 * 109.47313 * 304.74387 * 24 23 13 49 49 H 1.09001 * 109.46247 * 58.27322 * 25 12 11 50 50 H 1.09000 * 109.46429 * 178.24769 * 25 12 11 51 51 H 1.09001 * 109.50027 * 299.23300 * 26 25 12 52 52 H 1.09000 * 109.53209 * 179.13655 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3691 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0808 0.5868 0.0005 6 6 3.9206 2.9376 0.0012 7 6 5.4486 2.8589 -0.0016 8 6 5.9186 2.1111 -1.2509 9 6 6.0321 4.2733 -0.0041 10 6 3.4489 3.6858 1.2510 11 6 1.9243 3.8131 1.2184 12 7 1.5183 4.5398 0.0086 13 6 0.0728 4.8020 0.0122 14 1 -0.2229 5.2201 -0.9500 15 6 -0.6709 3.5131 0.2497 16 1 -0.1247 2.5906 0.3802 17 6 -2.0489 3.5105 0.2945 18 7 -2.7141 4.6337 0.1352 19 14 -2.9711 1.9115 0.5813 20 1 -3.1711 1.7099 2.0389 21 1 -4.2915 1.9732 -0.0956 22 1 -2.1840 0.7800 0.0285 23 6 -0.2623 5.7968 1.1253 24 6 0.4296 7.1317 0.8416 25 6 1.9189 3.8164 -1.2049 26 6 3.4435 3.6892 -1.2446 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 5.7866 2.3281 0.8884 33 1 5.5805 2.6420 -2.1408 34 1 7.0071 2.0547 -1.2526 35 1 5.5030 1.1034 -1.2490 36 1 7.1206 4.2172 -0.0056 37 1 5.6940 4.8041 -0.8940 38 1 5.6972 4.8061 0.8859 39 1 3.8968 4.6794 1.2710 40 1 3.7491 3.1334 2.1414 41 1 1.5864 4.3580 2.0999 42 1 1.4770 2.8191 1.2122 43 1 -3.6836 4.6319 0.1663 44 1 -1.3410 5.9479 1.1649 45 1 0.0848 5.4035 2.0807 46 1 0.0213 7.5658 -0.0711 47 1 0.2602 7.8130 1.6753 48 1 1.5000 6.9671 0.7185 49 1 1.4715 2.8225 -1.1996 50 1 1.5772 4.3637 -2.0834 51 1 3.8912 4.6828 -1.2639 52 1 3.7402 3.1389 -2.1375 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255178637.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:40:51 Heat of formation + Delta-G solvation = -91.807009 kcal Electronic energy + Delta-G solvation = -29947.278652 eV Core-core repulsion = 26332.669586 eV Total energy + Delta-G solvation = -3614.609066 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.04488 -38.28273 -37.01323 -35.61583 -33.32618 -31.59329 -31.29222 -30.54808 -29.74809 -27.20004 -26.57127 -24.63884 -23.56226 -22.82905 -22.19414 -21.30934 -20.51430 -18.96325 -18.68792 -17.21049 -16.43121 -16.27034 -15.39151 -15.32954 -14.66768 -14.30824 -14.09412 -13.97717 -13.62376 -13.46463 -13.29944 -12.88543 -12.66787 -12.46184 -12.43625 -12.22327 -11.98861 -11.78628 -11.70337 -11.64377 -11.39784 -11.25613 -11.09262 -11.02822 -10.91560 -10.71464 -10.68431 -10.52026 -10.28638 -10.03435 -9.85472 -9.84980 -9.69112 -9.57012 -9.47161 -9.17196 -8.91995 -8.28527 -6.95091 -5.89918 -4.01287 2.52863 3.01091 3.28242 3.34200 3.38152 4.44650 4.67003 4.85101 4.92541 5.12930 5.22819 5.24307 5.31964 5.33932 5.37860 5.44489 5.55472 5.61643 5.72571 5.80035 5.92053 5.93971 6.00287 6.04286 6.07146 6.13093 6.18618 6.20636 6.23579 6.27771 6.37441 6.44373 6.50828 6.53132 6.56822 6.60235 6.70867 6.77985 6.87824 6.95303 7.15409 7.20271 7.24961 7.46201 7.71042 7.86342 8.08490 8.13529 8.27496 8.44568 8.59276 9.11638 9.65193 11.09436 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.014356 B = 0.006510 C = 0.004846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.959085 B = 4299.993946 C = 5776.906268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.057 3.943 3 O -0.321 6.321 4 C 0.471 3.529 5 O -0.520 6.520 6 C -0.042 4.042 7 C -0.072 4.072 8 C -0.161 4.161 9 C -0.148 4.148 10 C -0.108 4.108 11 C 0.050 3.950 12 N -0.528 5.528 13 C 0.215 3.785 14 H 0.034 0.966 15 C -0.538 4.538 16 H 0.076 0.924 17 C 0.066 3.934 18 N -0.890 5.890 19 Si 0.865 3.135 20 H -0.286 1.286 21 H -0.294 1.294 22 H -0.253 1.253 23 C -0.109 4.109 24 C -0.139 4.139 25 C 0.050 3.950 26 C -0.106 4.106 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.053 0.947 34 H 0.049 0.951 35 H 0.076 0.924 36 H 0.052 0.948 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.083 0.917 40 H 0.057 0.943 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.257 0.743 44 H 0.090 0.910 45 H 0.031 0.969 46 H 0.036 0.964 47 H 0.022 0.978 48 H 0.050 0.950 49 H 0.060 0.940 50 H 0.061 0.939 51 H 0.083 0.917 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.329 -3.264 -0.649 12.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.017 4.017 3 O -0.236 6.236 4 C 0.316 3.684 5 O -0.410 6.410 6 C -0.044 4.044 7 C -0.091 4.091 8 C -0.218 4.218 9 C -0.205 4.205 10 C -0.146 4.146 11 C -0.078 4.078 12 N -0.252 5.252 13 C 0.108 3.892 14 H 0.052 0.948 15 C -0.577 4.577 16 H 0.094 0.906 17 C -0.136 4.136 18 N -0.530 5.530 19 Si 0.694 3.306 20 H -0.212 1.212 21 H -0.220 1.220 22 H -0.177 1.177 23 C -0.148 4.148 24 C -0.196 4.196 25 C -0.078 4.078 26 C -0.144 4.144 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.095 0.905 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.101 0.899 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.068 0.932 44 H 0.108 0.892 45 H 0.049 0.951 46 H 0.055 0.945 47 H 0.041 0.959 48 H 0.069 0.931 49 H 0.078 0.922 50 H 0.080 0.920 51 H 0.101 0.899 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 12.557 -3.050 -0.670 12.939 hybrid contribution -1.126 -1.799 0.230 2.135 sum 11.431 -4.850 -0.441 12.425 Atomic orbital electron populations 1.22058 0.91863 1.01886 1.04899 1.23042 0.95989 0.81277 1.01378 1.86988 1.23497 1.30651 1.82511 1.23859 0.80998 0.92277 0.71301 1.90529 1.60520 1.43485 1.46481 1.20728 0.94920 0.88879 0.99832 1.20939 0.91735 0.96827 0.99586 1.22129 1.00597 1.02106 0.96974 1.21965 1.00059 0.95832 1.02658 1.21802 0.98693 1.00120 0.94016 1.22157 0.91423 0.99515 0.94743 1.62390 1.18811 1.43950 1.00040 1.19229 0.80810 0.93808 0.95322 0.94807 1.22042 0.91587 0.95445 1.48594 0.90564 1.24911 0.97796 0.95534 0.95329 1.69881 1.07122 1.25407 1.50572 0.87125 0.79570 0.85710 0.78217 1.21232 1.22020 1.17698 1.21580 1.02308 0.93097 0.97781 1.21722 1.00845 0.98279 0.98772 1.22112 0.92201 0.99211 0.94304 1.21792 0.98096 1.00148 0.94336 0.90617 0.91427 0.90929 0.92041 0.92067 0.91006 0.92846 0.93182 0.90499 0.92852 0.91969 0.92032 0.89902 0.92475 0.91346 0.91800 0.93250 0.89179 0.95072 0.94512 0.95882 0.93065 0.92182 0.92033 0.89886 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 7.53 37.16 0.28 -2.12 16 2 C 0.06 0.89 6.19 37.16 0.23 1.12 16 3 O -0.32 -5.60 3.76 -39.26 -0.15 -5.75 16 4 C 0.47 7.82 6.18 36.01 0.22 8.04 16 5 O -0.52 -9.16 13.41 -18.75 -0.25 -9.42 16 6 C -0.04 -0.62 0.31 -155.54 -0.05 -0.66 16 7 C -0.07 -0.91 1.93 -90.62 -0.17 -1.09 16 8 C -0.16 -2.00 8.53 37.16 0.32 -1.69 16 9 C -0.15 -1.58 8.49 37.16 0.32 -1.27 16 10 C -0.11 -1.63 4.58 -26.66 -0.12 -1.75 16 11 C 0.05 0.91 4.51 -3.84 -0.02 0.90 16 12 N -0.53 -10.26 3.89 -228.08 -0.89 -11.14 16 13 C 0.21 4.97 1.72 -68.87 -0.12 4.85 16 14 H 0.03 0.89 7.95 -51.93 -0.41 0.48 16 15 C -0.54 -13.24 7.26 -34.44 -0.25 -13.49 16 16 H 0.08 1.81 3.43 -52.49 -0.18 1.63 16 17 C 0.07 1.70 5.30 -17.82 -0.09 1.60 16 18 N -0.89 -24.41 11.29 55.43 0.63 -23.78 16 19 Si 0.87 19.60 28.45 -169.99 -4.84 14.77 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.25 -5.15 4.25 56.52 0.24 -4.91 16 23 C -0.11 -2.49 5.15 -26.73 -0.14 -2.63 16 24 C -0.14 -2.74 9.85 37.16 0.37 -2.38 16 25 C 0.05 0.91 4.95 -3.83 -0.02 0.89 16 26 C -0.11 -1.56 4.16 -26.65 -0.11 -1.67 16 27 H 0.07 1.32 7.66 -51.93 -0.40 0.93 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.07 1.29 6.15 -51.93 -0.32 0.97 16 30 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 31 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 32 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 33 H 0.05 0.63 6.50 -51.93 -0.34 0.29 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.08 1.12 5.52 -51.93 -0.29 0.83 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.66 6.38 -51.93 -0.33 0.33 16 38 H 0.06 0.65 6.38 -51.93 -0.33 0.32 16 39 H 0.08 1.17 6.32 -51.92 -0.33 0.84 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 1.33 6.23 -51.93 -0.32 1.00 16 42 H 0.06 1.29 3.69 -51.93 -0.19 1.10 16 43 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 44 H 0.09 2.33 5.98 -51.93 -0.31 2.02 16 45 H 0.03 0.70 6.36 -51.93 -0.33 0.37 16 46 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.05 0.97 7.56 -51.93 -0.39 0.57 16 49 H 0.06 1.20 4.67 -51.93 -0.24 0.95 16 50 H 0.06 1.14 8.00 -51.93 -0.42 0.73 16 51 H 0.08 1.15 6.31 -51.93 -0.33 0.82 16 52 H 0.06 0.84 6.58 -51.93 -0.34 0.50 16 LS Contribution 359.09 15.07 5.41 5.41 Total: -1.00 -26.52 359.09 -8.34 -34.86 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -8.90 Total: 6.39 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: 0.64 Total: -11.35 kcal Atomic # 7 Polarization: -34.66 SS G_CDS: -0.26 Total: -34.93 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -0.40 Total: -15.16 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -4.84 Total: 14.77 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -26.52 -8.34 -34.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255178637.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.942 kcal (2) G-P(sol) polarization free energy of solvation -26.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds