Wall clock time and date at job start Fri Apr 10 2020 22:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45207 * 109.46667 * 2 1 4 4 C 1.34232 * 116.99465 * 179.97438 * 3 2 1 5 5 O 1.20823 * 120.00545 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99389 * 180.02562 * 4 3 2 7 7 C 1.53007 * 109.51738 * 180.12938 * 6 4 3 8 8 C 1.52995 * 109.47284 * 59.87550 * 7 6 4 9 9 C 1.53003 * 109.46722 * 179.87451 * 7 6 4 10 10 C 1.53113 * 109.52265 * 60.00226 * 6 4 3 11 11 C 1.53030 * 109.28160 * 297.74504 * 10 6 4 12 12 N 1.46850 * 109.52341 * 300.82612 * 11 10 6 13 13 C 1.46903 * 110.99979 * 185.84051 * 12 11 10 14 14 H 1.09006 * 109.46676 * 187.52478 * 13 12 11 15 15 C 1.50697 * 109.46649 * 307.51803 * 13 12 11 16 16 H 1.07997 * 120.00447 * 359.72910 * 15 13 12 17 17 C 1.37879 * 119.99853 * 180.02562 * 15 13 12 18 18 N 1.31511 * 119.99958 * 359.72661 * 17 15 13 19 19 Si 1.86803 * 120.00118 * 179.72608 * 17 15 13 20 20 H 1.48502 * 109.47057 * 90.00028 * 19 17 15 21 21 H 1.48504 * 109.47184 * 209.99867 * 19 17 15 22 22 H 1.48501 * 109.47192 * 329.99992 * 19 17 15 23 23 C 1.52997 * 109.47620 * 67.52086 * 13 12 11 24 24 C 1.53004 * 109.46953 * 63.19889 * 23 13 12 25 25 C 1.46844 * 111.20129 * 61.73799 * 12 11 10 26 26 C 1.53043 * 109.52067 * 298.26113 * 25 12 11 27 27 H 1.08999 * 109.46840 * 60.00079 * 1 2 3 28 28 H 1.09001 * 109.46713 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47115 * 300.00257 * 1 2 3 30 30 H 1.09001 * 109.47254 * 240.00280 * 2 1 3 31 31 H 1.08992 * 109.47106 * 119.99617 * 2 1 3 32 32 H 1.08994 * 109.46875 * 299.86887 * 7 6 4 33 33 H 1.08998 * 109.47349 * 59.99495 * 8 7 6 34 34 H 1.08999 * 109.47134 * 180.02562 * 8 7 6 35 35 H 1.09001 * 109.47039 * 299.99403 * 8 7 6 36 36 H 1.08999 * 109.46770 * 179.97438 * 9 7 6 37 37 H 1.08998 * 109.46877 * 299.99872 * 9 7 6 38 38 H 1.09002 * 109.47286 * 59.99692 * 9 7 6 39 39 H 1.09011 * 109.50377 * 177.80472 * 10 6 4 40 40 H 1.08997 * 109.53615 * 57.71075 * 10 6 4 41 41 H 1.09001 * 109.46756 * 180.80607 * 11 10 6 42 42 H 1.09005 * 109.45612 * 60.83022 * 11 10 6 43 43 H 0.97003 * 120.00529 * 179.97438 * 18 17 15 44 44 H 1.08993 * 109.47379 * 183.20258 * 23 13 12 45 45 H 1.08999 * 109.46787 * 303.20368 * 23 13 12 46 46 H 1.09004 * 109.46876 * 64.74526 * 24 23 13 47 47 H 1.08998 * 109.46551 * 184.73865 * 24 23 13 48 48 H 1.08998 * 109.47313 * 304.74387 * 24 23 13 49 49 H 1.09001 * 109.46247 * 58.27322 * 25 12 11 50 50 H 1.09000 * 109.46429 * 178.24769 * 25 12 11 51 51 H 1.09001 * 109.50027 * 299.23300 * 26 25 12 52 52 H 1.09000 * 109.53209 * 179.13655 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3691 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0808 0.5868 0.0005 6 6 3.9206 2.9376 0.0012 7 6 5.4486 2.8589 -0.0016 8 6 5.9186 2.1111 -1.2509 9 6 6.0321 4.2733 -0.0041 10 6 3.4489 3.6858 1.2510 11 6 1.9243 3.8131 1.2184 12 7 1.5183 4.5398 0.0086 13 6 0.0728 4.8020 0.0122 14 1 -0.2229 5.2201 -0.9500 15 6 -0.6709 3.5131 0.2497 16 1 -0.1247 2.5906 0.3802 17 6 -2.0489 3.5105 0.2945 18 7 -2.7141 4.6337 0.1352 19 14 -2.9711 1.9115 0.5813 20 1 -3.1711 1.7099 2.0389 21 1 -4.2915 1.9732 -0.0956 22 1 -2.1840 0.7800 0.0285 23 6 -0.2623 5.7968 1.1253 24 6 0.4296 7.1317 0.8416 25 6 1.9189 3.8164 -1.2049 26 6 3.4435 3.6892 -1.2446 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 5.7866 2.3281 0.8884 33 1 5.5805 2.6420 -2.1408 34 1 7.0071 2.0547 -1.2526 35 1 5.5030 1.1034 -1.2490 36 1 7.1206 4.2172 -0.0056 37 1 5.6940 4.8041 -0.8940 38 1 5.6972 4.8061 0.8859 39 1 3.8968 4.6794 1.2710 40 1 3.7491 3.1334 2.1414 41 1 1.5864 4.3580 2.0999 42 1 1.4770 2.8191 1.2122 43 1 -3.6836 4.6319 0.1663 44 1 -1.3410 5.9479 1.1649 45 1 0.0848 5.4035 2.0807 46 1 0.0213 7.5658 -0.0711 47 1 0.2602 7.8130 1.6753 48 1 1.5000 6.9671 0.7185 49 1 1.4715 2.8225 -1.1996 50 1 1.5772 4.3637 -2.0834 51 1 3.8912 4.6828 -1.2639 52 1 3.7402 3.1389 -2.1375 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255178637.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:40:51 Heat of formation + Delta-G solvation = -104.729849 kcal Electronic energy + Delta-G solvation = -29947.839029 eV Core-core repulsion = 26332.669586 eV Total energy + Delta-G solvation = -3615.169442 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.32008 -39.66511 -38.37693 -37.03528 -34.87168 -33.33736 -32.67877 -31.89048 -31.13796 -28.40027 -28.02993 -26.13539 -24.97861 -24.30548 -23.65894 -22.55544 -21.90390 -20.70764 -19.88454 -18.55926 -18.07061 -17.71667 -16.99104 -16.62706 -16.18390 -15.72575 -15.40935 -15.20068 -15.01861 -14.93263 -14.66945 -14.54614 -13.97681 -13.76061 -13.64209 -13.55327 -13.32383 -13.26355 -13.01958 -12.94518 -12.83827 -12.73320 -12.64177 -12.44898 -12.23533 -12.18461 -11.93971 -11.81079 -11.72075 -11.53686 -11.41851 -11.37164 -11.24072 -10.92961 -10.88589 -10.77623 -10.66633 -10.28461 -8.66075 -7.86098 -6.05932 1.24333 1.42854 1.46967 1.53415 1.80495 2.52278 3.32508 3.47809 3.67231 3.71461 3.78447 3.99839 4.03564 4.07445 4.32517 4.33752 4.40894 4.51736 4.57607 4.65416 4.74124 4.74752 4.77950 4.85457 4.88191 4.90208 4.91570 4.96009 4.99128 5.01835 5.11564 5.11815 5.14073 5.20371 5.23780 5.33794 5.40742 5.43761 5.50351 5.52190 5.56996 5.61678 5.67594 5.79561 5.83348 5.92854 6.22273 6.40579 6.61439 6.85263 6.87387 7.17894 7.64242 9.07815 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.014356 B = 0.006510 C = 0.004846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.959085 B = 4299.993946 C = 5776.906268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.056 3.944 3 O -0.338 6.338 4 C 0.467 3.533 5 O -0.532 6.532 6 C -0.039 4.039 7 C -0.068 4.068 8 C -0.158 4.158 9 C -0.145 4.145 10 C -0.100 4.100 11 C 0.052 3.948 12 N -0.518 5.518 13 C 0.220 3.780 14 H -0.003 1.003 15 C -0.534 4.534 16 H 0.084 0.916 17 C 0.016 3.984 18 N -0.923 5.923 19 Si 0.912 3.088 20 H -0.292 1.292 21 H -0.307 1.307 22 H -0.220 1.220 23 C -0.104 4.104 24 C -0.126 4.126 25 C 0.049 3.951 26 C -0.095 4.095 27 H 0.056 0.944 28 H 0.096 0.904 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.053 0.947 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.100 0.900 40 H 0.068 0.932 41 H 0.056 0.944 42 H 0.046 0.954 43 H 0.252 0.748 44 H 0.056 0.944 45 H 0.028 0.972 46 H 0.028 0.972 47 H 0.040 0.960 48 H 0.063 0.937 49 H 0.042 0.958 50 H 0.050 0.950 51 H 0.100 0.900 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.952 -3.774 -0.504 15.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.018 4.018 3 O -0.254 6.254 4 C 0.312 3.688 5 O -0.422 6.422 6 C -0.040 4.040 7 C -0.086 4.086 8 C -0.215 4.215 9 C -0.202 4.202 10 C -0.137 4.137 11 C -0.076 4.076 12 N -0.242 5.242 13 C 0.112 3.888 14 H 0.015 0.985 15 C -0.573 4.573 16 H 0.102 0.898 17 C -0.182 4.182 18 N -0.564 5.564 19 Si 0.740 3.260 20 H -0.219 1.219 21 H -0.234 1.234 22 H -0.142 1.142 23 C -0.143 4.143 24 C -0.183 4.183 25 C -0.079 4.079 26 C -0.132 4.132 27 H 0.075 0.925 28 H 0.115 0.885 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.118 0.882 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.075 0.925 45 H 0.047 0.953 46 H 0.047 0.953 47 H 0.059 0.941 48 H 0.082 0.918 49 H 0.060 0.940 50 H 0.069 0.931 51 H 0.118 0.882 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 15.210 -3.580 -0.529 15.635 hybrid contribution -1.935 -1.669 0.178 2.562 sum 13.275 -5.249 -0.351 14.280 Atomic orbital electron populations 1.22021 0.92342 1.03201 1.02817 1.23120 0.95599 0.80796 1.02276 1.86982 1.24206 1.31691 1.82560 1.24284 0.80591 0.93020 0.70870 1.90528 1.60599 1.44062 1.47008 1.20805 0.96393 0.87498 0.99282 1.20936 0.89839 0.98289 0.99546 1.22084 1.01598 1.00736 0.97109 1.21949 1.01067 0.94178 1.02966 1.21735 0.95759 1.01404 0.94840 1.22126 0.94019 0.97979 0.93519 1.62343 1.16097 1.44605 1.01173 1.18999 0.83119 0.93219 0.93418 0.98519 1.22395 0.91698 0.96455 1.46765 0.89772 1.25584 0.98880 0.97986 0.95740 1.70041 1.06795 1.27205 1.52333 0.86377 0.78120 0.84004 0.77539 1.21877 1.23400 1.14225 1.21412 1.00492 0.94860 0.97493 1.21577 1.01004 0.96659 0.99093 1.22125 0.94825 0.97744 0.93207 1.21713 0.95108 1.01341 0.95086 0.92473 0.88494 0.92915 0.91034 0.91190 0.91407 0.92206 0.91527 0.92785 0.91209 0.91632 0.91692 0.88157 0.91340 0.92574 0.93626 0.93907 0.92544 0.95283 0.95253 0.94081 0.91802 0.93977 0.93105 0.88213 0.90927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.52 7.53 71.98 0.54 -3.97 16 2 C 0.06 1.66 6.19 71.98 0.45 2.11 16 3 O -0.34 -11.55 3.76 -51.43 -0.19 -11.74 16 4 C 0.47 14.79 6.18 71.24 0.44 15.23 16 5 O -0.53 -17.86 13.41 21.97 0.29 -17.56 16 6 C -0.04 -1.03 0.31 -52.85 -0.02 -1.05 16 7 C -0.07 -1.49 1.93 -10.79 -0.02 -1.51 16 8 C -0.16 -3.47 8.53 71.98 0.61 -2.86 16 9 C -0.14 -2.50 8.49 71.98 0.61 -1.89 16 10 C -0.10 -2.75 4.58 30.64 0.14 -2.61 16 11 C 0.05 1.86 4.51 86.32 0.39 2.24 16 12 N -0.52 -19.96 3.89 -875.50 -3.40 -23.36 16 13 C 0.22 10.43 1.72 44.17 0.08 10.50 16 14 H 0.00 -0.17 7.95 -2.38 -0.02 -0.19 16 15 C -0.53 -26.92 7.26 25.60 0.19 -26.73 16 16 H 0.08 4.06 3.43 -2.91 -0.01 4.05 16 17 C 0.02 0.85 5.30 84.66 0.45 1.30 16 18 N -0.92 -52.61 11.29 21.45 0.24 -52.37 16 19 Si 0.91 41.00 28.45 68.60 1.95 42.95 16 20 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 21 H -0.31 -14.39 7.11 99.48 0.71 -13.69 16 22 H -0.22 -8.57 4.25 99.48 0.42 -8.15 16 23 C -0.10 -4.84 5.15 30.59 0.16 -4.68 16 24 C -0.13 -4.90 9.85 71.98 0.71 -4.19 16 25 C 0.05 1.76 4.95 86.33 0.43 2.19 16 26 C -0.10 -2.58 4.16 30.65 0.13 -2.45 16 27 H 0.06 1.95 7.66 -2.39 -0.02 1.93 16 28 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.05 1.82 6.15 -2.39 -0.01 1.81 16 30 H 0.07 1.98 8.13 -2.39 -0.02 1.96 16 31 H 0.07 1.96 8.13 -2.39 -0.02 1.94 16 32 H 0.07 1.58 8.10 -2.39 -0.02 1.56 16 33 H 0.06 1.22 6.50 -2.39 -0.02 1.20 16 34 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.05 1.45 5.52 -2.39 -0.01 1.44 16 36 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.06 1.10 6.38 -2.39 -0.02 1.09 16 38 H 0.06 1.09 6.38 -2.39 -0.02 1.08 16 39 H 0.10 2.46 6.32 -2.38 -0.02 2.45 16 40 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.06 2.14 6.23 -2.39 -0.01 2.13 16 42 H 0.05 1.84 3.69 -2.38 -0.01 1.83 16 43 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 44 H 0.06 3.03 5.98 -2.39 -0.01 3.02 16 45 H 0.03 1.33 6.36 -2.39 -0.02 1.31 16 46 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 47 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.06 2.30 7.56 -2.39 -0.02 2.29 16 49 H 0.04 1.68 4.67 -2.39 -0.01 1.67 16 50 H 0.05 1.90 8.00 -2.39 -0.02 1.88 16 51 H 0.10 2.42 6.31 -2.39 -0.02 2.41 16 52 H 0.07 1.83 6.58 -2.39 -0.02 1.81 16 Total: -1.00 -59.00 359.09 4.79 -54.21 By element: Atomic # 1 Polarization: 25.63 SS G_CDS: 0.62 Total: 26.25 kcal Atomic # 6 Polarization: -23.64 SS G_CDS: 5.28 Total: -18.37 kcal Atomic # 7 Polarization: -72.57 SS G_CDS: -3.16 Total: -75.73 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: 0.10 Total: -29.31 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 1.95 Total: 42.95 kcal Total: -59.00 4.79 -54.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255178637.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.522 kcal (2) G-P(sol) polarization free energy of solvation -59.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds