Wall clock time and date at job start Fri Apr 10 2020 22:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52998 * 109.46723 * 2 1 4 4 C 1.53003 * 109.46872 * 179.97438 * 3 2 1 5 5 N 1.46900 * 109.47161 * 185.76933 * 4 3 2 6 6 C 1.46905 * 110.99890 * 287.72447 * 5 4 3 7 7 C 1.50697 * 109.47232 * 157.50592 * 6 5 4 8 8 H 1.08001 * 119.99861 * 354.75168 * 7 6 5 9 9 C 1.37872 * 120.00155 * 174.75362 * 7 6 5 10 10 N 1.31521 * 119.99833 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00395 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47018 * 89.99605 * 11 9 7 13 13 H 1.48492 * 109.47339 * 210.00199 * 11 9 7 14 14 H 1.48506 * 109.46600 * 330.00091 * 11 9 7 15 15 C 1.46899 * 111.00067 * 163.77534 * 5 4 3 16 16 C 1.52999 * 109.47157 * 187.53545 * 15 5 4 17 17 C 1.52999 * 109.47152 * 179.97438 * 16 15 5 18 18 C 1.52999 * 109.46999 * 59.99812 * 17 16 15 19 19 C 1.50707 * 109.47370 * 60.00177 * 18 17 16 20 20 O 1.20823 * 119.99615 * 359.97438 * 19 18 17 21 21 O 1.34224 * 120.00447 * 180.02562 * 19 18 17 22 22 C 1.45192 * 117.00451 * 179.97438 * 21 19 18 23 23 C 1.52999 * 109.47734 * 179.97438 * 22 21 19 24 24 C 1.52999 * 109.47322 * 300.00083 * 18 17 16 25 25 C 1.52999 * 109.47371 * 67.53126 * 15 5 4 26 26 H 1.08995 * 109.46775 * 299.99585 * 1 2 3 27 27 H 1.09001 * 109.46989 * 59.99535 * 1 2 3 28 28 H 1.08998 * 109.46897 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46775 * 240.00415 * 2 1 3 30 30 H 1.09002 * 109.46592 * 120.00102 * 2 1 3 31 31 H 1.09004 * 109.47068 * 60.00445 * 3 2 1 32 32 H 1.08991 * 109.47686 * 299.99956 * 3 2 1 33 33 H 1.09000 * 109.46647 * 65.76784 * 4 3 2 34 34 H 1.08998 * 109.47264 * 305.76715 * 4 3 2 35 35 H 1.09005 * 109.46924 * 277.51121 * 6 5 4 36 36 H 1.09004 * 109.46754 * 37.50131 * 6 5 4 37 37 H 0.97003 * 119.99619 * 180.02562 * 10 9 7 38 38 H 1.09001 * 109.46841 * 307.53201 * 15 5 4 39 39 H 1.08996 * 109.47070 * 59.99410 * 16 15 5 40 40 H 1.09001 * 109.46964 * 299.99580 * 16 15 5 41 41 H 1.09001 * 109.47218 * 299.99884 * 17 16 15 42 42 H 1.09000 * 109.47392 * 179.97438 * 17 16 15 43 43 H 1.08995 * 109.47330 * 179.97438 * 18 17 16 44 44 H 1.09002 * 109.47098 * 300.00192 * 22 21 19 45 45 H 1.09004 * 109.47233 * 59.99504 * 22 21 19 46 46 H 1.09000 * 109.46595 * 59.99649 * 23 22 21 47 47 H 1.09000 * 109.47698 * 179.97438 * 23 22 21 48 48 H 1.09002 * 109.47076 * 300.00317 * 23 22 21 49 49 H 1.09006 * 109.47062 * 180.02562 * 24 18 17 50 50 H 1.09001 * 109.46964 * 299.99971 * 24 18 17 51 51 H 1.09000 * 109.46951 * 300.00385 * 25 15 5 52 52 H 1.09001 * 109.47077 * 60.00219 * 25 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0596 2.8205 0.1399 6 6 3.8419 3.5840 -1.0962 7 6 3.8225 5.0572 -0.7799 8 1 3.8732 5.3899 0.2463 9 6 3.7401 5.9805 -1.8006 10 7 3.6779 5.5753 -3.0503 11 14 3.7153 7.8067 -1.4086 12 1 5.1061 8.3268 -1.3847 13 1 2.9357 8.5256 -2.4479 14 1 3.0845 8.0194 -0.0811 15 6 5.4764 2.8392 0.5275 16 6 5.8994 4.2749 0.8448 17 6 7.3749 4.2943 1.2491 18 6 8.2262 3.7543 0.0982 19 6 8.0281 4.6176 -1.1211 20 8 7.2822 5.5669 -1.0745 21 8 8.6795 4.3312 -2.2593 22 6 8.4402 5.2052 -3.3937 23 6 9.2634 4.7247 -4.5905 24 6 7.8032 2.3187 -0.2191 25 6 6.3273 2.2995 -0.6238 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8901 32 1 1.6767 1.9564 -0.8899 33 1 3.9337 1.0206 -0.9363 34 1 3.9330 0.8420 0.8347 35 1 4.6477 3.3739 -1.7997 36 1 2.8887 3.2947 -1.5388 37 1 3.6203 6.2249 -3.7684 38 1 5.6201 2.2148 1.4093 39 1 5.2932 4.6594 1.6650 40 1 5.7558 4.8994 -0.0370 41 1 7.5182 3.6700 2.1311 42 1 7.6765 5.3172 1.4748 43 1 9.2774 3.7685 0.3860 44 1 7.3809 5.1862 -3.6498 45 1 8.7335 6.2230 -3.1365 46 1 8.9704 3.7069 -4.8478 47 1 9.0834 5.3806 -5.4422 48 1 10.3227 4.7440 -4.3341 49 1 8.4100 1.9338 -1.0388 50 1 7.9465 1.6943 0.6628 51 1 6.0259 1.2766 -0.8498 52 1 6.1837 2.9239 -1.5056 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255262012.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:40:55 Heat of formation + Delta-G solvation = -105.269490 kcal Electronic energy + Delta-G solvation = -28767.661545 eV Core-core repulsion = 25152.468702 eV Total energy + Delta-G solvation = -3615.192843 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.47438 -38.46409 -36.43199 -35.45750 -34.00875 -32.33424 -31.48824 -30.23350 -29.66561 -27.99953 -26.28403 -24.00093 -22.79234 -22.53573 -22.20510 -21.39051 -20.35769 -19.45425 -18.69363 -16.84265 -16.38678 -16.14514 -15.54570 -15.19099 -15.06813 -14.58387 -14.38103 -13.84170 -13.73961 -13.28918 -13.25123 -13.10128 -12.98912 -12.62115 -12.26983 -12.08574 -11.92845 -11.88981 -11.67628 -11.60799 -11.55251 -11.22530 -11.08101 -10.93713 -10.80345 -10.70098 -10.51874 -10.47142 -10.38612 -10.28057 -10.12296 -10.01121 -9.86505 -9.50131 -9.47199 -9.02258 -8.85059 -8.19591 -7.06180 -5.86561 -3.81048 2.83616 3.13300 3.45052 3.51099 3.54156 4.58025 4.83577 4.92030 5.04295 5.17887 5.21048 5.26511 5.29392 5.42914 5.46447 5.49179 5.49751 5.58968 5.63991 5.73181 5.78954 5.84771 5.93845 5.96636 6.04831 6.05393 6.06327 6.11411 6.13076 6.15477 6.17638 6.23563 6.29250 6.31477 6.37261 6.44995 6.54003 6.71148 6.78374 6.81880 6.91441 6.96256 7.10091 7.37985 7.55045 7.85633 8.00086 8.29663 8.34736 8.42208 8.71783 9.21237 9.78863 11.23731 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.010471 B = 0.005643 C = 0.004551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2673.393317 B = 4960.989425 C = 6151.106780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.113 4.113 4 C 0.059 3.941 5 N -0.533 5.533 6 C 0.186 3.814 7 C -0.487 4.487 8 H 0.066 0.934 9 C 0.062 3.938 10 N -0.901 5.901 11 Si 0.886 3.114 12 H -0.278 1.278 13 H -0.292 1.292 14 H -0.275 1.275 15 C 0.103 3.897 16 C -0.141 4.141 17 C -0.104 4.104 18 C -0.074 4.074 19 C 0.454 3.546 20 O -0.467 6.467 21 O -0.367 6.367 22 C 0.060 3.940 23 C -0.148 4.148 24 C -0.102 4.102 25 C -0.161 4.161 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.047 0.953 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.020 0.980 34 H 0.053 0.947 35 H 0.004 0.996 36 H 0.022 0.978 37 H 0.256 0.744 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.143 0.857 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.095 0.905 44 H 0.078 0.922 45 H 0.063 0.937 46 H 0.064 0.936 47 H 0.075 0.925 48 H 0.060 0.940 49 H 0.067 0.933 50 H 0.070 0.930 51 H 0.055 0.945 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.427 -8.235 3.407 12.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.151 4.151 4 C -0.070 4.070 5 N -0.255 5.255 6 C 0.061 3.939 7 C -0.525 4.525 8 H 0.084 0.916 9 C -0.138 4.138 10 N -0.542 5.542 11 Si 0.714 3.286 12 H -0.204 1.204 13 H -0.218 1.218 14 H -0.200 1.200 15 C -0.006 4.006 16 C -0.178 4.178 17 C -0.142 4.142 18 C -0.093 4.093 19 C 0.295 3.705 20 O -0.351 6.351 21 O -0.285 6.285 22 C -0.014 4.014 23 C -0.205 4.205 24 C -0.140 4.140 25 C -0.200 4.200 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.038 0.962 34 H 0.072 0.928 35 H 0.022 0.978 36 H 0.040 0.960 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.160 0.840 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.113 0.887 44 H 0.097 0.903 45 H 0.081 0.919 46 H 0.083 0.917 47 H 0.094 0.906 48 H 0.079 0.921 49 H 0.085 0.915 50 H 0.089 0.911 51 H 0.074 0.926 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.876 -7.613 3.588 11.526 hybrid contribution 0.417 0.718 -0.695 1.082 sum 8.293 -6.895 2.893 11.166 Atomic orbital electron populations 1.21754 0.96276 1.00768 1.01939 1.21501 0.95525 0.97774 1.01170 1.21583 0.95396 0.95085 1.03037 1.21980 0.95154 0.91391 0.98468 1.62363 1.15292 1.10266 1.37603 1.19887 0.95995 0.93048 0.85000 1.21159 1.47946 0.90190 0.93243 0.91637 1.24834 0.95531 0.98480 0.94975 1.69962 1.51911 1.33678 0.98652 0.86671 0.78057 0.86089 0.77757 1.20382 1.21806 1.20022 1.21487 0.87409 0.96842 0.94835 1.22407 0.91456 0.97736 1.06215 1.21523 0.97227 1.00516 0.94934 1.21083 1.01761 0.95254 0.91252 1.23625 0.77737 0.84876 0.84286 1.90753 1.32376 1.28313 1.83630 1.86414 1.65501 1.55617 1.20971 1.22955 1.01694 0.92740 0.83996 1.21764 1.00046 1.02565 0.96109 1.21451 0.97388 0.93554 1.01627 1.22372 0.94443 1.01149 1.01998 0.92831 0.92743 0.93425 0.92630 0.92617 0.91492 0.91602 0.96150 0.92811 0.97814 0.95963 0.93455 0.92720 0.92297 0.83998 0.91807 0.91714 0.88657 0.90319 0.91888 0.91656 0.90614 0.92085 0.91473 0.91141 0.92630 0.90349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.91 37.16 0.37 -1.48 16 2 C -0.12 -1.66 5.93 -26.73 -0.16 -1.82 16 3 C -0.11 -1.93 5.19 -26.73 -0.14 -2.07 16 4 C 0.06 1.06 4.29 -3.82 -0.02 1.05 16 5 N -0.53 -11.37 4.42 -228.08 -1.01 -12.38 16 6 C 0.19 4.75 4.32 -4.97 -0.02 4.73 16 7 C -0.49 -13.57 6.42 -34.44 -0.22 -13.79 16 8 H 0.07 1.86 6.38 -52.49 -0.33 1.52 16 9 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 10 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 11 Si 0.89 22.78 29.54 -169.99 -5.02 17.76 16 12 H -0.28 -7.25 7.11 56.52 0.40 -6.84 16 13 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 14 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 15 C 0.10 1.97 2.19 -67.71 -0.15 1.82 16 16 C -0.14 -2.86 3.63 -26.73 -0.10 -2.95 16 17 C -0.10 -1.67 5.09 -26.73 -0.14 -1.80 16 18 C -0.07 -1.13 3.11 -91.77 -0.29 -1.41 16 19 C 0.45 8.52 5.74 36.01 0.21 8.72 16 20 O -0.47 -10.67 13.41 -18.75 -0.25 -10.92 16 21 O -0.37 -6.37 10.12 -39.24 -0.40 -6.77 16 22 C 0.06 0.98 6.19 37.16 0.23 1.21 16 23 C -0.15 -1.80 10.29 37.16 0.38 -1.42 16 24 C -0.10 -1.47 5.39 -26.71 -0.14 -1.61 16 25 C -0.16 -2.88 4.37 -26.71 -0.12 -3.00 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.07 1.28 6.73 -51.93 -0.35 0.93 16 33 H 0.02 0.38 7.26 -51.93 -0.38 0.00 16 34 H 0.05 0.87 7.84 -51.93 -0.41 0.47 16 35 H 0.00 0.12 5.39 -51.93 -0.28 -0.16 16 36 H 0.02 0.62 6.32 -51.93 -0.33 0.29 16 37 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.05 0.95 7.92 -51.93 -0.41 0.54 16 39 H 0.06 1.23 7.79 -51.93 -0.40 0.83 16 40 H 0.14 3.44 2.67 -51.93 -0.14 3.30 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.06 1.04 8.10 -51.93 -0.42 0.62 16 43 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.08 1.52 8.13 -51.93 -0.42 1.10 16 45 H 0.06 1.01 8.13 -51.93 -0.42 0.58 16 46 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 49 H 0.07 0.91 8.11 -51.93 -0.42 0.49 16 50 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 51 H 0.05 0.94 6.98 -51.93 -0.36 0.58 16 52 H 0.08 1.72 5.06 -51.93 -0.26 1.46 16 LS Contribution 388.47 15.07 5.85 5.85 Total: -1.00 -31.04 388.47 -10.03 -41.07 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -9.55 Total: 3.60 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: -0.39 Total: -12.13 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: -0.27 Total: -38.47 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.65 Total: -17.69 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.04 -10.03 -41.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255262012.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.200 kcal (2) G-P(sol) polarization free energy of solvation -31.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds