Wall clock time and date at job start Fri Apr 10 2020 22:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52998 * 109.46723 * 2 1 4 4 C 1.53003 * 109.46872 * 179.97438 * 3 2 1 5 5 N 1.46900 * 109.47161 * 185.76933 * 4 3 2 6 6 C 1.46905 * 110.99890 * 287.72447 * 5 4 3 7 7 C 1.50697 * 109.47232 * 157.50592 * 6 5 4 8 8 H 1.08001 * 119.99861 * 354.75168 * 7 6 5 9 9 C 1.37872 * 120.00155 * 174.75362 * 7 6 5 10 10 N 1.31521 * 119.99833 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00395 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47018 * 89.99605 * 11 9 7 13 13 H 1.48492 * 109.47339 * 210.00199 * 11 9 7 14 14 H 1.48506 * 109.46600 * 330.00091 * 11 9 7 15 15 C 1.46899 * 111.00067 * 163.77534 * 5 4 3 16 16 C 1.52999 * 109.47157 * 187.53545 * 15 5 4 17 17 C 1.52999 * 109.47152 * 179.97438 * 16 15 5 18 18 C 1.52999 * 109.46999 * 59.99812 * 17 16 15 19 19 C 1.50707 * 109.47370 * 60.00177 * 18 17 16 20 20 O 1.20823 * 119.99615 * 359.97438 * 19 18 17 21 21 O 1.34224 * 120.00447 * 180.02562 * 19 18 17 22 22 C 1.45192 * 117.00451 * 179.97438 * 21 19 18 23 23 C 1.52999 * 109.47734 * 179.97438 * 22 21 19 24 24 C 1.52999 * 109.47322 * 300.00083 * 18 17 16 25 25 C 1.52999 * 109.47371 * 67.53126 * 15 5 4 26 26 H 1.08995 * 109.46775 * 299.99585 * 1 2 3 27 27 H 1.09001 * 109.46989 * 59.99535 * 1 2 3 28 28 H 1.08998 * 109.46897 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46775 * 240.00415 * 2 1 3 30 30 H 1.09002 * 109.46592 * 120.00102 * 2 1 3 31 31 H 1.09004 * 109.47068 * 60.00445 * 3 2 1 32 32 H 1.08991 * 109.47686 * 299.99956 * 3 2 1 33 33 H 1.09000 * 109.46647 * 65.76784 * 4 3 2 34 34 H 1.08998 * 109.47264 * 305.76715 * 4 3 2 35 35 H 1.09005 * 109.46924 * 277.51121 * 6 5 4 36 36 H 1.09004 * 109.46754 * 37.50131 * 6 5 4 37 37 H 0.97003 * 119.99619 * 180.02562 * 10 9 7 38 38 H 1.09001 * 109.46841 * 307.53201 * 15 5 4 39 39 H 1.08996 * 109.47070 * 59.99410 * 16 15 5 40 40 H 1.09001 * 109.46964 * 299.99580 * 16 15 5 41 41 H 1.09001 * 109.47218 * 299.99884 * 17 16 15 42 42 H 1.09000 * 109.47392 * 179.97438 * 17 16 15 43 43 H 1.08995 * 109.47330 * 179.97438 * 18 17 16 44 44 H 1.09002 * 109.47098 * 300.00192 * 22 21 19 45 45 H 1.09004 * 109.47233 * 59.99504 * 22 21 19 46 46 H 1.09000 * 109.46595 * 59.99649 * 23 22 21 47 47 H 1.09000 * 109.47698 * 179.97438 * 23 22 21 48 48 H 1.09002 * 109.47076 * 300.00317 * 23 22 21 49 49 H 1.09006 * 109.47062 * 180.02562 * 24 18 17 50 50 H 1.09001 * 109.46964 * 299.99971 * 24 18 17 51 51 H 1.09000 * 109.46951 * 300.00385 * 25 15 5 52 52 H 1.09001 * 109.47077 * 60.00219 * 25 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0596 2.8205 0.1399 6 6 3.8419 3.5840 -1.0962 7 6 3.8225 5.0572 -0.7799 8 1 3.8732 5.3899 0.2463 9 6 3.7401 5.9805 -1.8006 10 7 3.6779 5.5753 -3.0503 11 14 3.7153 7.8067 -1.4086 12 1 5.1061 8.3268 -1.3847 13 1 2.9357 8.5256 -2.4479 14 1 3.0845 8.0194 -0.0811 15 6 5.4764 2.8392 0.5275 16 6 5.8994 4.2749 0.8448 17 6 7.3749 4.2943 1.2491 18 6 8.2262 3.7543 0.0982 19 6 8.0281 4.6176 -1.1211 20 8 7.2822 5.5669 -1.0745 21 8 8.6795 4.3312 -2.2593 22 6 8.4402 5.2052 -3.3937 23 6 9.2634 4.7247 -4.5905 24 6 7.8032 2.3187 -0.2191 25 6 6.3273 2.2995 -0.6238 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8901 32 1 1.6767 1.9564 -0.8899 33 1 3.9337 1.0206 -0.9363 34 1 3.9330 0.8420 0.8347 35 1 4.6477 3.3739 -1.7997 36 1 2.8887 3.2947 -1.5388 37 1 3.6203 6.2249 -3.7684 38 1 5.6201 2.2148 1.4093 39 1 5.2932 4.6594 1.6650 40 1 5.7558 4.8994 -0.0370 41 1 7.5182 3.6700 2.1311 42 1 7.6765 5.3172 1.4748 43 1 9.2774 3.7685 0.3860 44 1 7.3809 5.1862 -3.6498 45 1 8.7335 6.2230 -3.1365 46 1 8.9704 3.7069 -4.8478 47 1 9.0834 5.3806 -5.4422 48 1 10.3227 4.7440 -4.3341 49 1 8.4100 1.9338 -1.0388 50 1 7.9465 1.6943 0.6628 51 1 6.0259 1.2766 -0.8498 52 1 6.1837 2.9239 -1.5056 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255262012.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:40:54 Heat of formation + Delta-G solvation = -123.061167 kcal Electronic energy + Delta-G solvation = -28768.433050 eV Core-core repulsion = 25152.468702 eV Total energy + Delta-G solvation = -3615.964348 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.91698 -39.99650 -37.88109 -36.89418 -35.47777 -34.37856 -32.71157 -31.60733 -30.99011 -29.82940 -27.93524 -25.36020 -24.67909 -23.86312 -23.53305 -22.75496 -21.69098 -20.94197 -20.25084 -18.43856 -18.29341 -17.64776 -17.03306 -16.76726 -16.47707 -16.25316 -16.01496 -15.33064 -15.13323 -14.74236 -14.57991 -14.46337 -14.41876 -13.94252 -13.75491 -13.48882 -13.34879 -13.25617 -13.13516 -13.04889 -12.90341 -12.80727 -12.65036 -12.49410 -12.48833 -12.27692 -12.18504 -11.94419 -11.78544 -11.69521 -11.55707 -11.44611 -11.38718 -11.25153 -10.93364 -10.89247 -10.56041 -10.38045 -8.81013 -8.10596 -6.09185 1.31115 1.38346 1.40344 1.42445 1.82599 2.43129 3.23638 3.32843 3.65142 3.78647 3.94690 3.98600 4.03858 4.08286 4.11886 4.22617 4.31639 4.33266 4.37816 4.39727 4.50833 4.54408 4.67931 4.69720 4.74279 4.80787 4.86894 4.89039 4.89794 4.92821 5.01986 5.03300 5.08128 5.09503 5.14824 5.17802 5.23610 5.30369 5.33347 5.39976 5.45735 5.47579 5.55731 5.57608 5.64393 5.78816 6.19751 6.22941 6.54382 6.81741 6.97401 6.98966 7.53104 8.99108 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.010471 B = 0.005643 C = 0.004551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2673.393317 B = 4960.989425 C = 6151.106780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.108 4.108 4 C 0.060 3.940 5 N -0.544 5.544 6 C 0.209 3.791 7 C -0.480 4.480 8 H 0.057 0.943 9 C 0.013 3.987 10 N -0.933 5.933 11 Si 0.938 3.062 12 H -0.286 1.286 13 H -0.284 1.284 14 H -0.266 1.266 15 C 0.101 3.899 16 C -0.147 4.147 17 C -0.097 4.097 18 C -0.071 4.071 19 C 0.446 3.554 20 O -0.519 6.519 21 O -0.362 6.362 22 C 0.057 3.943 23 C -0.137 4.137 24 C -0.093 4.093 25 C -0.153 4.153 26 H 0.054 0.946 27 H 0.041 0.959 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.077 0.923 31 H 0.058 0.942 32 H 0.029 0.971 33 H 0.013 0.987 34 H 0.086 0.914 35 H -0.022 1.022 36 H -0.008 1.008 37 H 0.255 0.745 38 H 0.089 0.911 39 H 0.041 0.959 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.058 0.942 43 H 0.142 0.858 44 H 0.034 0.966 45 H 0.062 0.938 46 H 0.065 0.935 47 H 0.092 0.908 48 H 0.083 0.917 49 H 0.079 0.921 50 H 0.112 0.888 51 H 0.064 0.936 52 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.473 -10.458 5.510 15.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.147 4.147 4 C -0.068 4.068 5 N -0.267 5.267 6 C 0.083 3.917 7 C -0.518 4.518 8 H 0.075 0.925 9 C -0.184 4.184 10 N -0.575 5.575 11 Si 0.765 3.235 12 H -0.212 1.212 13 H -0.210 1.210 14 H -0.191 1.191 15 C -0.007 4.007 16 C -0.184 4.184 17 C -0.135 4.135 18 C -0.090 4.090 19 C 0.290 3.710 20 O -0.406 6.406 21 O -0.280 6.280 22 C -0.017 4.017 23 C -0.193 4.193 24 C -0.131 4.131 25 C -0.192 4.192 26 H 0.073 0.927 27 H 0.060 0.940 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.048 0.952 33 H 0.031 0.969 34 H 0.104 0.896 35 H -0.005 1.005 36 H 0.010 0.990 37 H 0.064 0.936 38 H 0.107 0.893 39 H 0.059 0.941 40 H 0.118 0.882 41 H 0.123 0.877 42 H 0.076 0.924 43 H 0.159 0.841 44 H 0.052 0.948 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.111 0.889 48 H 0.102 0.898 49 H 0.097 0.903 50 H 0.131 0.869 51 H 0.082 0.918 52 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 9.929 -9.857 5.701 15.108 hybrid contribution -0.228 1.393 -1.333 1.942 sum 9.701 -8.464 4.368 13.595 Atomic orbital electron populations 1.21752 0.95344 1.02135 1.01453 1.21446 0.96337 0.95058 1.02312 1.21533 0.94939 0.97350 1.00831 1.22078 0.95621 0.89785 0.99309 1.62279 1.17639 1.11975 1.34796 1.19408 0.93331 0.92647 0.86310 1.21332 1.46355 0.91559 0.92584 0.92520 1.25491 0.95823 1.02046 0.94990 1.70064 1.53503 1.34610 0.99331 0.85847 0.77498 0.82117 0.78053 1.21244 1.20978 1.19068 1.21617 0.85987 0.96816 0.96276 1.22260 0.94678 0.97732 1.03730 1.21479 0.93991 1.01376 0.96642 1.21301 1.04203 0.94645 0.88818 1.24630 0.76488 0.84511 0.85368 1.90743 1.34530 1.30848 1.84468 1.86429 1.64983 1.55582 1.20967 1.23042 0.99954 0.93266 0.85419 1.21756 1.00414 1.02735 0.94444 1.21476 0.94261 0.93507 1.03864 1.22237 0.97381 1.00199 0.99400 0.92664 0.93987 0.91083 0.92350 0.90459 0.92298 0.95176 0.96908 0.89572 1.00464 0.98961 0.93631 0.89333 0.94057 0.88207 0.87677 0.92353 0.84076 0.94783 0.92002 0.91597 0.88944 0.89801 0.90281 0.86920 0.91753 0.95525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 9.91 71.99 0.71 -2.77 16 2 C -0.11 -2.91 5.93 30.60 0.18 -2.73 16 3 C -0.11 -3.74 5.19 30.59 0.16 -3.58 16 4 C 0.06 2.14 4.29 86.30 0.37 2.51 16 5 N -0.54 -23.56 4.42 -875.50 -3.87 -27.43 16 6 C 0.21 11.36 4.32 85.56 0.37 11.73 16 7 C -0.48 -28.19 6.42 25.60 0.16 -28.02 16 8 H 0.06 3.37 6.38 -2.91 -0.02 3.35 16 9 C 0.01 0.81 5.46 84.65 0.46 1.27 16 10 N -0.93 -58.83 13.29 21.45 0.28 -58.54 16 11 Si 0.94 48.93 29.54 68.60 2.03 50.96 16 12 H -0.29 -15.19 7.11 99.48 0.71 -14.49 16 13 H -0.28 -14.34 7.11 99.48 0.71 -13.64 16 14 H -0.27 -13.36 7.11 99.48 0.71 -12.65 16 15 C 0.10 3.74 2.19 44.91 0.10 3.84 16 16 C -0.15 -5.92 3.63 30.59 0.11 -5.81 16 17 C -0.10 -2.87 5.09 30.59 0.16 -2.71 16 18 C -0.07 -1.94 3.11 -11.54 -0.04 -1.98 16 19 C 0.45 16.85 5.74 71.24 0.41 17.26 16 20 O -0.52 -24.89 13.41 21.97 0.29 -24.59 16 21 O -0.36 -12.62 10.12 -51.36 -0.52 -13.14 16 22 C 0.06 1.96 6.19 71.98 0.45 2.40 16 23 C -0.14 -3.22 10.29 71.98 0.74 -2.48 16 24 C -0.09 -2.32 5.39 30.61 0.17 -2.16 16 25 C -0.15 -5.34 4.37 30.61 0.13 -5.21 16 26 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 32 H 0.03 1.23 6.73 -2.39 -0.02 1.21 16 33 H 0.01 0.47 7.26 -2.39 -0.02 0.46 16 34 H 0.09 2.53 7.84 -2.39 -0.02 2.51 16 35 H -0.02 -1.32 5.39 -2.38 -0.01 -1.33 16 36 H -0.01 -0.45 6.32 -2.38 -0.02 -0.47 16 37 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 38 H 0.09 2.71 7.92 -2.39 -0.02 2.69 16 39 H 0.04 1.74 7.79 -2.39 -0.02 1.72 16 40 H 0.10 5.03 2.67 -2.39 -0.01 5.03 16 41 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.06 1.79 8.10 -2.39 -0.02 1.77 16 43 H 0.14 2.68 8.14 -2.39 -0.02 2.66 16 44 H 0.03 1.44 8.13 -2.39 -0.02 1.42 16 45 H 0.06 2.08 8.13 -2.39 -0.02 2.06 16 46 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 47 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 48 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 49 H 0.08 1.84 8.11 -2.38 -0.02 1.82 16 50 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 51 H 0.06 2.09 6.98 -2.39 -0.02 2.07 16 52 H 0.03 1.21 5.06 -2.39 -0.01 1.20 16 Total: -1.00 -74.91 388.47 3.73 -71.18 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: 0.87 Total: 20.00 kcal Atomic # 6 Polarization: -23.08 SS G_CDS: 4.64 Total: -18.43 kcal Atomic # 7 Polarization: -82.39 SS G_CDS: -3.59 Total: -85.98 kcal Atomic # 8 Polarization: -37.51 SS G_CDS: -0.23 Total: -37.74 kcal Atomic # 14 Polarization: 48.93 SS G_CDS: 2.03 Total: 50.96 kcal Total: -74.91 3.73 -71.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255262012.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.876 kcal (2) G-P(sol) polarization free energy of solvation -74.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds