Wall clock time and date at job start Fri Apr 10 2020 22:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47420 * 2 1 4 4 C 1.53006 * 109.47267 * 179.97438 * 3 2 1 5 5 N 1.46895 * 109.47138 * 179.97438 * 4 3 2 6 6 C 1.46901 * 110.99991 * 66.04651 * 5 4 3 7 7 C 1.50698 * 109.47358 * 199.33504 * 6 5 4 8 8 H 1.08002 * 119.99583 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00049 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00190 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99666 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47561 * 90.00051 * 11 9 7 13 13 H 1.48504 * 109.46796 * 210.00101 * 11 9 7 14 14 H 1.48504 * 109.47195 * 329.99526 * 11 9 7 15 15 C 1.46899 * 110.99873 * 189.99710 * 5 4 3 16 16 H 1.08994 * 109.47417 * 189.43682 * 15 5 4 17 17 C 1.52996 * 109.47366 * 309.44347 * 15 5 4 18 18 C 1.53007 * 109.47084 * 180.02562 * 17 15 5 19 19 C 1.53000 * 109.46803 * 299.99329 * 18 17 15 20 20 C 1.52994 * 109.47118 * 60.00454 * 19 18 17 21 21 H 1.09001 * 109.47740 * 59.99637 * 20 19 18 22 22 C 1.50701 * 109.47261 * 180.02562 * 20 19 18 23 23 O 1.20821 * 120.00396 * 119.99933 * 22 20 19 24 24 O 1.34230 * 119.99662 * 299.99387 * 22 20 19 25 25 C 1.45198 * 116.99886 * 179.97438 * 24 22 20 26 26 C 1.53002 * 109.47168 * 180.02562 * 25 24 22 27 27 C 1.53001 * 109.47049 * 69.44052 * 15 5 4 28 28 H 1.08996 * 109.47492 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46941 * 300.01029 * 1 2 3 30 30 H 1.09001 * 109.46710 * 59.99941 * 1 2 3 31 31 H 1.08994 * 109.47288 * 239.99461 * 2 1 3 32 32 H 1.09002 * 109.46460 * 119.99570 * 2 1 3 33 33 H 1.08994 * 109.47330 * 59.99487 * 3 2 1 34 34 H 1.09002 * 109.46953 * 299.99268 * 3 2 1 35 35 H 1.09005 * 109.46443 * 59.99581 * 4 3 2 36 36 H 1.09001 * 109.47035 * 300.00165 * 4 3 2 37 37 H 1.09000 * 109.46825 * 319.33871 * 6 5 4 38 38 H 1.09000 * 109.46655 * 79.33570 * 6 5 4 39 39 H 0.96993 * 120.00172 * 180.02562 * 10 9 7 40 40 H 1.08994 * 109.47396 * 59.99322 * 17 15 5 41 41 H 1.09005 * 109.46948 * 299.99520 * 17 15 5 42 42 H 1.08997 * 109.46811 * 179.97438 * 18 17 15 43 43 H 1.09000 * 109.47260 * 59.99582 * 18 17 15 44 44 H 1.09000 * 109.47419 * 300.00156 * 19 18 17 45 45 H 1.08994 * 109.46898 * 180.02562 * 19 18 17 46 46 H 1.09006 * 109.47307 * 300.00130 * 25 24 22 47 47 H 1.08999 * 109.47211 * 60.00442 * 25 24 22 48 48 H 1.08995 * 109.47238 * 180.02562 * 26 25 24 49 49 H 1.09005 * 109.46891 * 300.00510 * 26 25 24 50 50 H 1.08999 * 109.47109 * 59.99871 * 26 25 24 51 51 H 1.09005 * 109.47298 * 59.99381 * 27 15 5 52 52 H 1.09008 * 109.46862 * 300.00036 * 27 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0598 2.8273 0.0000 6 6 3.7098 3.5100 1.2528 7 6 3.7862 5.0014 1.0505 8 1 4.0664 5.4020 0.0874 9 6 3.4986 5.8544 2.0949 10 7 3.1580 5.3665 3.2677 11 14 3.5926 7.7030 1.8438 12 1 2.2714 8.2093 1.3932 13 1 3.9634 8.3581 3.1240 14 1 4.6181 8.0113 0.8149 15 6 5.5088 2.8732 -0.2375 16 1 5.8729 3.8864 -0.0678 17 6 6.2134 1.9109 0.7207 18 6 7.7226 1.9592 0.4738 19 6 8.0165 1.5474 -0.9702 20 6 7.3119 2.5096 -1.9284 21 1 7.6756 3.5230 -1.7585 22 6 7.6008 2.1036 -3.3507 23 8 6.6929 1.8065 -4.0905 24 8 8.8668 2.0721 -3.7956 25 6 9.0705 1.6711 -5.1761 26 6 10.5660 1.6946 -5.4987 27 6 5.8022 2.4610 -1.6814 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8901 33 1 1.6767 1.9563 0.8899 34 1 1.6768 1.9562 -0.8901 35 1 3.9337 0.9283 -0.8891 36 1 3.9331 0.9286 0.8909 37 1 2.6968 3.2345 1.5459 38 1 4.4080 3.2132 2.0355 39 1 2.9553 5.9666 4.0023 40 1 5.8493 0.8977 0.5511 41 1 6.0044 2.2046 1.7495 42 1 8.2247 1.2740 1.1567 43 1 8.0864 2.9726 0.6438 44 1 7.6528 0.5340 -1.1402 45 1 9.0916 1.5813 -1.1460 46 1 8.6835 0.6626 -5.3225 47 1 8.5453 2.3613 -5.8363 48 1 10.7189 1.3941 -6.5352 49 1 10.9534 2.7029 -5.3521 50 1 11.0910 1.0042 -4.8386 51 1 5.3001 3.1465 -2.3642 52 1 5.4381 1.4477 -1.8511 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255367023.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:40:58 Heat of formation + Delta-G solvation = -120.528758 kcal Electronic energy + Delta-G solvation = -27337.203184 eV Core-core repulsion = 23721.348650 eV Total energy + Delta-G solvation = -3615.854534 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.70496 -38.88246 -36.73659 -35.92933 -34.04719 -32.48354 -31.95124 -30.77081 -29.52647 -28.37744 -25.87157 -24.65299 -22.96830 -22.94826 -22.26664 -21.24120 -20.64952 -19.96887 -18.66737 -17.48153 -16.62989 -16.55338 -16.11468 -15.11725 -15.02366 -14.72944 -14.44693 -14.15758 -14.10141 -13.67060 -13.54899 -13.28741 -13.08448 -12.95858 -12.70363 -12.42744 -12.14934 -12.05520 -12.01141 -11.94602 -11.77976 -11.25557 -11.16015 -11.08634 -10.89617 -10.79768 -10.66895 -10.62420 -10.53244 -10.47101 -10.42807 -10.21022 -10.03390 -9.93199 -9.86238 -9.42083 -9.14376 -8.36277 -7.11567 -5.98147 -3.98386 2.24918 2.62266 3.34305 3.40505 3.43957 4.44964 4.56768 4.66958 4.69592 4.77593 4.84419 5.03813 5.05033 5.22040 5.31928 5.36994 5.39966 5.43936 5.44587 5.50728 5.52507 5.54843 5.60530 5.71616 5.72276 5.78304 5.85092 5.97601 6.07294 6.09034 6.10586 6.14153 6.20977 6.26897 6.32301 6.39973 6.41188 6.42670 6.45856 6.51399 6.76457 6.77537 6.89221 6.92498 7.34246 7.45576 7.78743 7.88344 8.19773 8.29110 8.61993 9.09852 9.65375 11.12194 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.009787 B = 0.004024 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2860.128466 B = 6957.335754 C = 8719.124229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.117 4.117 4 C 0.055 3.945 5 N -0.529 5.529 6 C 0.188 3.812 7 C -0.501 4.501 8 H 0.062 0.938 9 C 0.055 3.945 10 N -0.900 5.900 11 Si 0.894 3.106 12 H -0.281 1.281 13 H -0.288 1.288 14 H -0.274 1.274 15 C 0.096 3.904 16 H 0.091 0.909 17 C -0.154 4.154 18 C -0.112 4.112 19 C -0.106 4.106 20 C -0.077 4.077 21 H 0.110 0.890 22 C 0.467 3.533 23 O -0.506 6.506 24 O -0.359 6.359 25 C 0.059 3.941 26 C -0.152 4.152 27 C -0.092 4.092 28 H 0.047 0.953 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.023 0.977 37 H 0.034 0.966 38 H -0.004 1.004 39 H 0.260 0.740 40 H 0.058 0.942 41 H 0.071 0.929 42 H 0.062 0.938 43 H 0.067 0.933 44 H 0.063 0.937 45 H 0.071 0.929 46 H 0.067 0.933 47 H 0.068 0.932 48 H 0.077 0.923 49 H 0.066 0.934 50 H 0.066 0.934 51 H 0.076 0.924 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.512 -10.576 -10.991 18.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.155 4.155 4 C -0.073 4.073 5 N -0.252 5.252 6 C 0.064 3.936 7 C -0.540 4.540 8 H 0.080 0.920 9 C -0.146 4.146 10 N -0.540 5.540 11 Si 0.722 3.278 12 H -0.207 1.207 13 H -0.214 1.214 14 H -0.199 1.199 15 C -0.013 4.013 16 H 0.109 0.891 17 C -0.193 4.193 18 C -0.150 4.150 19 C -0.144 4.144 20 C -0.097 4.097 21 H 0.128 0.872 22 C 0.310 3.690 23 O -0.393 6.393 24 O -0.277 6.277 25 C -0.014 4.014 26 C -0.209 4.209 27 C -0.130 4.130 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.041 0.959 37 H 0.052 0.948 38 H 0.013 0.987 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.082 0.918 45 H 0.089 0.911 46 H 0.086 0.914 47 H 0.087 0.913 48 H 0.096 0.904 49 H 0.085 0.915 50 H 0.085 0.915 51 H 0.095 0.905 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.950 -10.355 -11.451 18.367 hybrid contribution 0.323 0.569 0.469 0.805 sum 10.273 -9.786 -10.981 17.942 Atomic orbital electron populations 1.21752 0.96264 1.00767 1.01952 1.21492 0.95551 0.97752 1.01179 1.21642 0.95429 0.95231 1.03188 1.22062 0.95018 0.91281 0.98973 1.62252 1.10711 1.12766 1.39457 1.19823 0.96141 0.93577 0.84103 1.21188 1.45228 0.90712 0.96848 0.92005 1.24964 0.95676 0.98800 0.95171 1.69952 1.47450 1.34822 1.01790 0.86564 0.78377 0.85560 0.77291 1.20748 1.21446 1.19906 1.21528 0.88762 0.99422 0.91603 0.89117 1.22283 0.94816 1.00477 1.01747 1.21459 0.96951 1.01847 0.94732 1.21509 0.99925 0.98172 0.94772 1.21181 0.99435 1.02282 0.86806 0.87213 1.24008 0.80243 0.73757 0.91037 1.90657 1.46091 1.44511 1.58012 1.86526 1.30685 1.79648 1.30825 1.22987 0.97898 1.00595 0.79963 1.21798 0.93642 1.03483 1.01959 1.21513 0.90532 1.02869 0.98126 0.93433 0.92691 0.92854 0.92647 0.92594 0.91170 0.91624 0.92329 0.95931 0.94828 0.98659 0.93067 0.92329 0.91062 0.91973 0.91422 0.91815 0.91051 0.91422 0.91334 0.90414 0.91463 0.91514 0.90521 0.91586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.91 37.16 0.37 -1.55 16 2 C -0.12 -1.71 5.93 -26.73 -0.16 -1.87 16 3 C -0.12 -2.03 5.19 -26.73 -0.14 -2.17 16 4 C 0.06 0.99 3.79 -3.82 -0.01 0.97 16 5 N -0.53 -11.00 4.35 -228.09 -0.99 -11.99 16 6 C 0.19 4.72 4.51 -4.98 -0.02 4.70 16 7 C -0.50 -13.79 8.52 -34.44 -0.29 -14.08 16 8 H 0.06 1.71 7.79 -52.49 -0.41 1.30 16 9 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 10 N -0.90 -26.41 13.29 55.43 0.74 -25.67 16 11 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 15 C 0.10 1.74 2.08 -67.71 -0.14 1.60 16 16 H 0.09 1.83 7.35 -51.93 -0.38 1.45 16 17 C -0.15 -2.47 4.42 -26.73 -0.12 -2.59 16 18 C -0.11 -1.44 5.92 -26.73 -0.16 -1.59 16 19 C -0.11 -1.25 5.13 -26.73 -0.14 -1.39 16 20 C -0.08 -1.04 2.63 -91.75 -0.24 -1.28 16 21 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16 22 C 0.47 6.57 7.25 36.01 0.26 6.83 16 23 O -0.51 -8.48 15.73 -18.75 -0.29 -8.78 16 24 O -0.36 -4.40 10.12 -39.26 -0.40 -4.80 16 25 C 0.06 0.58 6.19 37.16 0.23 0.81 16 26 C -0.15 -1.03 10.29 37.16 0.38 -0.65 16 27 C -0.09 -1.48 3.79 -26.70 -0.10 -1.58 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.07 1.38 6.25 -51.93 -0.32 1.05 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.06 0.98 6.26 -51.93 -0.32 0.66 16 36 H 0.02 0.41 6.83 -51.93 -0.35 0.05 16 37 H 0.03 0.91 5.88 -51.93 -0.31 0.60 16 38 H 0.00 -0.12 6.39 -51.93 -0.33 -0.45 16 39 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.06 0.90 6.53 -51.93 -0.34 0.56 16 41 H 0.07 1.31 6.63 -51.93 -0.34 0.97 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.07 0.74 8.11 -51.93 -0.42 0.32 16 46 H 0.07 0.65 8.13 -51.93 -0.42 0.23 16 47 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 48 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 49 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 51 H 0.08 1.35 8.10 -51.93 -0.42 0.93 16 52 H 0.07 1.07 6.45 -51.92 -0.33 0.74 16 LS Contribution 398.37 15.07 6.00 6.00 Total: -1.00 -30.26 398.37 -10.11 -40.38 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -9.77 Total: 0.70 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: -0.38 Total: -12.39 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: -0.26 Total: -37.67 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -0.69 Total: -13.58 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.26 -10.11 -40.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255367023.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.154 kcal (2) G-P(sol) polarization free energy of solvation -30.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds