Wall clock time and date at job start Fri Apr 10 2020 22:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47420 * 2 1 4 4 C 1.53006 * 109.47267 * 179.97438 * 3 2 1 5 5 N 1.46895 * 109.47138 * 179.97438 * 4 3 2 6 6 C 1.46901 * 110.99991 * 66.04651 * 5 4 3 7 7 C 1.50698 * 109.47358 * 199.33504 * 6 5 4 8 8 H 1.08002 * 119.99583 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00049 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00190 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99666 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47561 * 90.00051 * 11 9 7 13 13 H 1.48504 * 109.46796 * 210.00101 * 11 9 7 14 14 H 1.48504 * 109.47195 * 329.99526 * 11 9 7 15 15 C 1.46899 * 110.99873 * 189.99710 * 5 4 3 16 16 H 1.08994 * 109.47417 * 189.43682 * 15 5 4 17 17 C 1.52996 * 109.47366 * 309.44347 * 15 5 4 18 18 C 1.53007 * 109.47084 * 180.02562 * 17 15 5 19 19 C 1.53000 * 109.46803 * 299.99329 * 18 17 15 20 20 C 1.52994 * 109.47118 * 60.00454 * 19 18 17 21 21 H 1.09001 * 109.47740 * 59.99637 * 20 19 18 22 22 C 1.50701 * 109.47261 * 180.02562 * 20 19 18 23 23 O 1.20821 * 120.00396 * 119.99933 * 22 20 19 24 24 O 1.34230 * 119.99662 * 299.99387 * 22 20 19 25 25 C 1.45198 * 116.99886 * 179.97438 * 24 22 20 26 26 C 1.53002 * 109.47168 * 180.02562 * 25 24 22 27 27 C 1.53001 * 109.47049 * 69.44052 * 15 5 4 28 28 H 1.08996 * 109.47492 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46941 * 300.01029 * 1 2 3 30 30 H 1.09001 * 109.46710 * 59.99941 * 1 2 3 31 31 H 1.08994 * 109.47288 * 239.99461 * 2 1 3 32 32 H 1.09002 * 109.46460 * 119.99570 * 2 1 3 33 33 H 1.08994 * 109.47330 * 59.99487 * 3 2 1 34 34 H 1.09002 * 109.46953 * 299.99268 * 3 2 1 35 35 H 1.09005 * 109.46443 * 59.99581 * 4 3 2 36 36 H 1.09001 * 109.47035 * 300.00165 * 4 3 2 37 37 H 1.09000 * 109.46825 * 319.33871 * 6 5 4 38 38 H 1.09000 * 109.46655 * 79.33570 * 6 5 4 39 39 H 0.96993 * 120.00172 * 180.02562 * 10 9 7 40 40 H 1.08994 * 109.47396 * 59.99322 * 17 15 5 41 41 H 1.09005 * 109.46948 * 299.99520 * 17 15 5 42 42 H 1.08997 * 109.46811 * 179.97438 * 18 17 15 43 43 H 1.09000 * 109.47260 * 59.99582 * 18 17 15 44 44 H 1.09000 * 109.47419 * 300.00156 * 19 18 17 45 45 H 1.08994 * 109.46898 * 180.02562 * 19 18 17 46 46 H 1.09006 * 109.47307 * 300.00130 * 25 24 22 47 47 H 1.08999 * 109.47211 * 60.00442 * 25 24 22 48 48 H 1.08995 * 109.47238 * 180.02562 * 26 25 24 49 49 H 1.09005 * 109.46891 * 300.00510 * 26 25 24 50 50 H 1.08999 * 109.47109 * 59.99871 * 26 25 24 51 51 H 1.09005 * 109.47298 * 59.99381 * 27 15 5 52 52 H 1.09008 * 109.46862 * 300.00036 * 27 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0598 2.8273 0.0000 6 6 3.7098 3.5100 1.2528 7 6 3.7862 5.0014 1.0505 8 1 4.0664 5.4020 0.0874 9 6 3.4986 5.8544 2.0949 10 7 3.1580 5.3665 3.2677 11 14 3.5926 7.7030 1.8438 12 1 2.2714 8.2093 1.3932 13 1 3.9634 8.3581 3.1240 14 1 4.6181 8.0113 0.8149 15 6 5.5088 2.8732 -0.2375 16 1 5.8729 3.8864 -0.0678 17 6 6.2134 1.9109 0.7207 18 6 7.7226 1.9592 0.4738 19 6 8.0165 1.5474 -0.9702 20 6 7.3119 2.5096 -1.9284 21 1 7.6756 3.5230 -1.7585 22 6 7.6008 2.1036 -3.3507 23 8 6.6929 1.8065 -4.0905 24 8 8.8668 2.0721 -3.7956 25 6 9.0705 1.6711 -5.1761 26 6 10.5660 1.6946 -5.4987 27 6 5.8022 2.4610 -1.6814 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8901 33 1 1.6767 1.9563 0.8899 34 1 1.6768 1.9562 -0.8901 35 1 3.9337 0.9283 -0.8891 36 1 3.9331 0.9286 0.8909 37 1 2.6968 3.2345 1.5459 38 1 4.4080 3.2132 2.0355 39 1 2.9553 5.9666 4.0023 40 1 5.8493 0.8977 0.5511 41 1 6.0044 2.2046 1.7495 42 1 8.2247 1.2740 1.1567 43 1 8.0864 2.9726 0.6438 44 1 7.6528 0.5340 -1.1402 45 1 9.0916 1.5813 -1.1460 46 1 8.6835 0.6626 -5.3225 47 1 8.5453 2.3613 -5.8363 48 1 10.7189 1.3941 -6.5352 49 1 10.9534 2.7029 -5.3521 50 1 11.0910 1.0042 -4.8386 51 1 5.3001 3.1465 -2.3642 52 1 5.4381 1.4477 -1.8511 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255367023.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:40:57 Heat of formation + Delta-G solvation = -136.227217 kcal Electronic energy + Delta-G solvation = -27337.883921 eV Core-core repulsion = 23721.348650 eV Total energy + Delta-G solvation = -3616.535271 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.81966 -40.25588 -37.86884 -37.21529 -35.49727 -34.44769 -32.76446 -31.89131 -30.82835 -30.11430 -27.57192 -25.71863 -24.67159 -24.04531 -23.47478 -22.42336 -21.92318 -21.22529 -20.07951 -18.69833 -18.33560 -17.57956 -17.52818 -16.78509 -16.28948 -16.21523 -15.77763 -15.59005 -15.34085 -14.98709 -14.65933 -14.50039 -14.24525 -14.10666 -13.95663 -13.67590 -13.55658 -13.39929 -13.29430 -12.98930 -12.88344 -12.63397 -12.53650 -12.50461 -12.38877 -12.27287 -12.13335 -12.02873 -11.80927 -11.69325 -11.63294 -11.51573 -11.47282 -11.38120 -11.13546 -11.12176 -10.97395 -10.52517 -8.83296 -8.14927 -6.23620 1.14984 1.40980 1.42163 1.52875 1.64867 2.42416 3.16033 3.24861 3.54473 3.72652 3.84926 4.01836 4.04068 4.09894 4.13072 4.16738 4.20104 4.24790 4.33825 4.36790 4.38468 4.51332 4.54116 4.57200 4.67814 4.72302 4.84947 4.86532 4.92562 4.94192 4.97031 5.01718 5.06463 5.09840 5.14629 5.15528 5.18105 5.21882 5.30236 5.31838 5.34157 5.42192 5.45256 5.50884 5.53509 5.55051 5.73357 6.16587 6.50820 6.72020 6.74484 6.92855 7.45195 8.94798 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.009787 B = 0.004024 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2860.128466 B = 6957.335754 C = 8719.124229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.113 4.113 4 C 0.059 3.941 5 N -0.542 5.542 6 C 0.208 3.792 7 C -0.515 4.515 8 H 0.056 0.944 9 C 0.004 3.996 10 N -0.934 5.934 11 Si 0.961 3.039 12 H -0.277 1.277 13 H -0.282 1.282 14 H -0.265 1.265 15 C 0.096 3.904 16 H 0.064 0.936 17 C -0.147 4.147 18 C -0.105 4.105 19 C -0.097 4.097 20 C -0.075 4.075 21 H 0.119 0.881 22 C 0.473 3.527 23 O -0.538 6.538 24 O -0.356 6.356 25 C 0.050 3.950 26 C -0.145 4.145 27 C -0.079 4.079 28 H 0.070 0.930 29 H 0.043 0.957 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.038 0.962 34 H 0.056 0.944 35 H 0.077 0.923 36 H 0.022 0.978 37 H 0.008 0.992 38 H -0.029 1.029 39 H 0.262 0.738 40 H 0.067 0.933 41 H 0.039 0.961 42 H 0.083 0.917 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.096 0.904 46 H 0.068 0.932 47 H 0.064 0.936 48 H 0.099 0.901 49 H 0.067 0.933 50 H 0.071 0.929 51 H 0.055 0.945 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.355 -11.405 -12.397 20.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C -0.151 4.151 4 C -0.069 4.069 5 N -0.265 5.265 6 C 0.082 3.918 7 C -0.554 4.554 8 H 0.074 0.926 9 C -0.194 4.194 10 N -0.575 5.575 11 Si 0.786 3.214 12 H -0.203 1.203 13 H -0.208 1.208 14 H -0.190 1.190 15 C -0.013 4.013 16 H 0.082 0.918 17 C -0.186 4.186 18 C -0.143 4.143 19 C -0.134 4.134 20 C -0.095 4.095 21 H 0.137 0.863 22 C 0.318 3.682 23 O -0.427 6.427 24 O -0.273 6.273 25 C -0.023 4.023 26 C -0.202 4.202 27 C -0.117 4.117 28 H 0.089 0.911 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.040 0.960 37 H 0.026 0.974 38 H -0.011 1.011 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.058 0.942 42 H 0.102 0.898 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.115 0.885 46 H 0.087 0.913 47 H 0.083 0.917 48 H 0.117 0.883 49 H 0.086 0.914 50 H 0.090 0.910 51 H 0.074 0.926 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 11.821 -11.193 -12.872 20.754 hybrid contribution -0.241 0.800 0.860 1.199 sum 11.581 -10.393 -12.012 19.658 Atomic orbital electron populations 1.21745 0.95197 1.02160 1.01512 1.21446 0.96485 0.95167 1.02181 1.21591 0.95015 0.97390 1.01078 1.22107 0.95416 0.89710 0.99664 1.62174 1.12970 1.14489 1.36835 1.19408 0.94007 0.93085 0.85317 1.21467 1.45095 0.92146 0.96648 0.92583 1.25804 0.95181 1.03601 0.94803 1.70074 1.48269 1.36522 1.02612 0.85510 0.78593 0.79740 0.77546 1.20285 1.20754 1.18954 1.21505 0.87267 0.98782 0.93708 0.91752 1.22163 0.97374 0.99921 0.99102 1.21426 0.94185 1.02545 0.96191 1.21475 1.01206 0.97691 0.93022 1.21123 0.97470 1.03513 0.87364 0.86324 1.23955 0.80507 0.72937 0.90823 1.90650 1.47101 1.46136 1.58831 1.86515 1.29269 1.79231 1.32302 1.23302 1.00041 1.00485 0.78483 1.21817 0.91202 1.03812 1.03359 1.21296 0.92723 1.02004 0.95685 0.91081 0.93757 0.92749 0.90942 0.92165 0.94357 0.92564 0.90424 0.96016 0.97405 1.01110 0.92892 0.91484 0.94184 0.89807 0.91566 0.91249 0.88510 0.91311 0.91718 0.88271 0.91351 0.91004 0.92595 0.91576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.91 71.98 0.71 -2.95 16 2 C -0.11 -3.13 5.93 30.59 0.18 -2.95 16 3 C -0.11 -4.03 5.19 30.59 0.16 -3.87 16 4 C 0.06 2.16 3.79 86.31 0.33 2.48 16 5 N -0.54 -23.49 4.35 -875.53 -3.81 -27.30 16 6 C 0.21 11.02 4.51 85.56 0.39 11.41 16 7 C -0.52 -29.44 8.52 25.60 0.22 -29.22 16 8 H 0.06 3.20 7.79 -2.91 -0.02 3.17 16 9 C 0.00 0.22 5.46 84.66 0.46 0.68 16 10 N -0.93 -56.43 13.29 21.45 0.28 -56.14 16 11 Si 0.96 44.89 29.54 68.60 2.03 46.92 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 13 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 14 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 15 C 0.10 3.57 2.08 44.91 0.09 3.67 16 16 H 0.06 2.71 7.35 -2.39 -0.02 2.70 16 17 C -0.15 -4.72 4.42 30.60 0.14 -4.58 16 18 C -0.11 -2.52 5.92 30.60 0.18 -2.34 16 19 C -0.10 -2.01 5.13 30.59 0.16 -1.86 16 20 C -0.08 -1.91 2.63 -11.52 -0.03 -1.94 16 21 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 22 C 0.47 12.63 7.25 71.24 0.52 13.15 16 23 O -0.54 -17.61 15.73 21.98 0.35 -17.27 16 24 O -0.36 -7.96 10.12 -51.42 -0.52 -8.48 16 25 C 0.05 0.89 6.19 71.98 0.45 1.33 16 26 C -0.15 -1.58 10.29 71.98 0.74 -0.84 16 27 C -0.08 -2.52 3.79 30.61 0.12 -2.41 16 28 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.04 1.60 6.25 -2.39 -0.01 1.58 16 34 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.08 2.55 6.26 -2.38 -0.01 2.54 16 36 H 0.02 0.80 6.83 -2.39 -0.02 0.78 16 37 H 0.01 0.46 5.88 -2.39 -0.01 0.44 16 38 H -0.03 -1.64 6.39 -2.39 -0.02 -1.65 16 39 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 40 H 0.07 2.02 6.53 -2.39 -0.02 2.01 16 41 H 0.04 1.53 6.63 -2.38 -0.02 1.52 16 42 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.10 1.62 8.11 -2.39 -0.02 1.60 16 46 H 0.07 1.20 8.13 -2.38 -0.02 1.18 16 47 H 0.06 1.19 8.13 -2.39 -0.02 1.17 16 48 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 49 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 50 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 51 H 0.06 2.00 8.10 -2.38 -0.02 1.99 16 52 H 0.07 2.10 6.45 -2.38 -0.02 2.08 16 Total: -1.00 -67.71 398.37 3.99 -63.72 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: 0.86 Total: 18.79 kcal Atomic # 6 Polarization: -25.04 SS G_CDS: 4.80 Total: -20.24 kcal Atomic # 7 Polarization: -79.92 SS G_CDS: -3.52 Total: -83.44 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -0.17 Total: -25.75 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -67.71 3.99 -63.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255367023.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.506 kcal (2) G-P(sol) polarization free energy of solvation -67.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds