Wall clock time and date at job start Fri Apr 10 2020 22:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47129 * 2 1 4 4 C 1.52995 * 109.47348 * 180.02562 * 3 2 1 5 5 N 1.46904 * 109.47276 * 181.23160 * 4 3 2 6 6 C 1.46897 * 110.99859 * 295.30462 * 5 4 3 7 7 C 1.50699 * 109.47049 * 296.74907 * 6 5 4 8 8 H 1.08000 * 120.00057 * 354.94690 * 7 6 5 9 9 C 1.37879 * 119.99822 * 174.95493 * 7 6 5 10 10 N 1.31511 * 120.00108 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99650 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47300 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47267 * 119.99908 * 11 9 7 14 14 H 1.48500 * 109.46897 * 239.99720 * 11 9 7 15 15 C 1.46900 * 110.99950 * 59.25821 * 5 4 3 16 16 H 1.09002 * 109.47100 * 300.00280 * 15 5 4 17 17 C 1.53000 * 109.47231 * 59.99967 * 15 5 4 18 18 C 1.53002 * 109.47156 * 180.02562 * 17 15 5 19 19 C 1.53002 * 109.47128 * 300.00099 * 18 17 15 20 20 C 1.53000 * 109.47183 * 59.99917 * 19 18 17 21 21 H 1.08996 * 109.47457 * 179.97438 * 20 19 18 22 22 C 1.50703 * 109.47231 * 60.00008 * 20 19 18 23 23 O 1.20830 * 120.00266 * 240.00465 * 22 20 19 24 24 O 1.34226 * 119.99941 * 60.00042 * 22 20 19 25 25 C 1.45198 * 117.00367 * 180.02562 * 24 22 20 26 26 C 1.52997 * 109.47371 * 180.02562 * 25 24 22 27 27 C 1.53002 * 109.47156 * 300.00066 * 20 19 18 28 28 H 1.08995 * 109.47595 * 60.00075 * 1 2 3 29 29 H 1.09004 * 109.46918 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47363 * 300.00017 * 1 2 3 31 31 H 1.09003 * 109.47363 * 239.99983 * 2 1 3 32 32 H 1.08995 * 109.47595 * 119.99925 * 2 1 3 33 33 H 1.09003 * 109.47012 * 59.99768 * 3 2 1 34 34 H 1.09003 * 109.47049 * 300.00132 * 3 2 1 35 35 H 1.08996 * 109.47263 * 61.23039 * 4 3 2 36 36 H 1.08997 * 109.47270 * 301.22979 * 4 3 2 37 37 H 1.08997 * 109.47298 * 56.75048 * 6 5 4 38 38 H 1.08997 * 109.47118 * 176.75008 * 6 5 4 39 39 H 0.97002 * 119.99649 * 180.02562 * 10 9 7 40 40 H 1.08999 * 109.47313 * 60.00063 * 17 15 5 41 41 H 1.08997 * 109.47072 * 299.99909 * 17 15 5 42 42 H 1.08999 * 109.47126 * 59.99742 * 18 17 15 43 43 H 1.08998 * 109.47233 * 180.02562 * 18 17 15 44 44 H 1.08996 * 109.47388 * 179.97438 * 19 18 17 45 45 H 1.09002 * 109.47136 * 300.00238 * 19 18 17 46 46 H 1.09001 * 109.46765 * 300.00332 * 25 24 22 47 47 H 1.09005 * 109.47150 * 60.00093 * 25 24 22 48 48 H 1.09003 * 109.47232 * 180.02562 * 26 25 24 49 49 H 1.09000 * 109.46948 * 299.99652 * 26 25 24 50 50 H 1.08998 * 109.47304 * 59.99764 * 26 25 24 51 51 H 1.08999 * 109.47126 * 300.00258 * 27 20 19 52 52 H 1.08998 * 109.47233 * 179.97438 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0596 2.8273 0.0291 6 6 3.6818 3.5456 -1.1953 7 6 4.3424 2.8952 -2.3834 8 1 5.0427 2.0863 -2.2361 9 6 4.0529 3.3328 -3.6584 10 7 3.1998 4.3175 -3.8377 11 14 4.8723 2.5269 -5.1310 12 1 5.7839 1.4520 -4.6635 13 1 3.8336 1.9446 -6.0182 14 1 5.6512 3.5440 -5.8820 15 6 3.5746 3.5316 1.2236 16 1 2.4847 3.5463 1.2192 17 6 4.0698 2.8090 2.4780 18 6 3.5642 3.5423 3.7220 19 6 4.0931 4.9779 3.7181 20 6 3.5979 5.7005 2.4637 21 1 3.9743 6.7234 2.4611 22 6 2.0910 5.7203 2.4573 23 8 1.4837 5.2012 1.5508 24 8 1.4234 6.3146 3.4587 25 6 -0.0267 6.2950 3.3873 26 6 -0.6072 7.0154 4.6058 27 6 4.1035 4.9673 1.2196 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.6765 1.9564 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.9329 0.9482 -0.9016 36 1 3.9336 0.9097 0.8778 37 1 2.5993 3.5112 -1.3175 38 1 4.0063 4.5836 -1.1223 39 1 2.9959 4.6251 -4.7348 40 1 5.1597 2.7943 2.4824 41 1 3.6926 1.7864 2.4810 42 1 2.4743 3.5566 3.7174 43 1 3.9174 3.0278 4.6157 44 1 3.7326 5.5005 4.6041 45 1 5.1830 4.9636 3.7226 46 1 -0.3525 6.7998 2.4778 47 1 -0.3759 5.2624 3.3747 48 1 -1.6958 7.0002 4.5524 49 1 -0.2814 6.5108 5.5154 50 1 -0.2580 8.0478 4.6180 51 1 5.1934 4.9529 1.2243 52 1 3.7503 5.4818 0.3260 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255367024.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:41:01 Heat of formation + Delta-G solvation = -110.443603 kcal Electronic energy + Delta-G solvation = -28401.497130 eV Core-core repulsion = 24786.079921 eV Total energy + Delta-G solvation = -3615.417209 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.82382 -38.63560 -36.59668 -35.87744 -33.75549 -32.44201 -31.81805 -30.87975 -29.45152 -28.01912 -25.79339 -24.63136 -23.36916 -22.46320 -22.22180 -21.05782 -20.96785 -19.67494 -18.73618 -17.20688 -16.62966 -16.23513 -15.75859 -15.56517 -14.77415 -14.57905 -14.52052 -14.27950 -13.73739 -13.55841 -13.39697 -13.33240 -13.04518 -12.87472 -12.31817 -12.23234 -12.07180 -11.94101 -11.87698 -11.77240 -11.68691 -11.53216 -11.19373 -11.01283 -10.85840 -10.77157 -10.65585 -10.56217 -10.48250 -10.45225 -10.39189 -10.11720 -9.88020 -9.86239 -9.47799 -9.26847 -8.97628 -8.31044 -6.91682 -5.92216 -3.92444 2.43774 2.76778 3.35550 3.43014 3.47773 4.49077 4.63023 4.78935 4.81308 4.86656 4.89091 5.03292 5.17041 5.27722 5.38375 5.41251 5.42339 5.43070 5.54552 5.59888 5.62934 5.64333 5.69066 5.71872 5.78742 5.80706 5.94427 6.01180 6.08141 6.17697 6.19783 6.23687 6.28208 6.30904 6.41357 6.45150 6.51420 6.52434 6.59698 6.66595 6.76979 6.89854 7.03619 7.14887 7.51861 7.66541 7.93123 7.99569 8.25878 8.38428 8.73411 9.16795 9.70861 11.18237 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.012265 B = 0.004341 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.461992 B = 6449.023790 C = 6952.462466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.155 4.155 4 C 0.067 3.933 5 N -0.532 5.532 6 C 0.189 3.811 7 C -0.502 4.502 8 H 0.061 0.939 9 C 0.055 3.945 10 N -0.898 5.898 11 Si 0.892 3.108 12 H -0.273 1.273 13 H -0.286 1.286 14 H -0.285 1.285 15 C 0.069 3.931 16 H 0.065 0.935 17 C -0.115 4.115 18 C -0.120 4.120 19 C -0.108 4.108 20 C -0.077 4.077 21 H 0.105 0.895 22 C 0.460 3.540 23 O -0.487 6.487 24 O -0.363 6.363 25 C 0.059 3.941 26 C -0.150 4.150 27 C -0.101 4.101 28 H 0.053 0.947 29 H 0.046 0.954 30 H 0.047 0.953 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.050 0.950 37 H 0.001 0.999 38 H 0.029 0.971 39 H 0.258 0.742 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.052 0.948 43 H 0.064 0.936 44 H 0.070 0.930 45 H 0.079 0.921 46 H 0.068 0.932 47 H 0.067 0.933 48 H 0.076 0.924 49 H 0.065 0.935 50 H 0.065 0.935 51 H 0.081 0.919 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.926 1.478 18.192 18.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.194 4.194 4 C -0.062 4.062 5 N -0.255 5.255 6 C 0.064 3.936 7 C -0.541 4.541 8 H 0.080 0.920 9 C -0.146 4.146 10 N -0.538 5.538 11 Si 0.720 3.280 12 H -0.197 1.197 13 H -0.213 1.213 14 H -0.212 1.212 15 C -0.039 4.039 16 H 0.082 0.918 17 C -0.153 4.153 18 C -0.158 4.158 19 C -0.145 4.145 20 C -0.096 4.096 21 H 0.123 0.877 22 C 0.303 3.697 23 O -0.372 6.372 24 O -0.281 6.281 25 C -0.014 4.014 26 C -0.207 4.207 27 C -0.138 4.138 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.069 0.931 37 H 0.018 0.982 38 H 0.047 0.953 39 H 0.068 0.932 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.098 0.902 46 H 0.087 0.913 47 H 0.085 0.915 48 H 0.095 0.905 49 H 0.084 0.916 50 H 0.084 0.916 51 H 0.099 0.901 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.700 1.427 17.787 18.223 hybrid contribution -0.785 -0.285 -1.110 1.389 sum -4.484 1.142 16.677 17.307 Atomic orbital electron populations 1.21760 0.96739 1.00562 1.01617 1.21430 0.95124 0.97793 1.01197 1.22221 0.99033 0.95851 1.02261 1.22033 0.91453 0.91582 1.01109 1.62368 1.58614 1.01697 1.02778 1.19774 0.94890 0.93892 0.85039 1.21239 1.24609 1.17963 0.90269 0.92042 1.24963 0.95412 0.95317 0.98887 1.69987 1.34620 1.27463 1.21693 0.86542 0.79256 0.79350 0.82870 1.19729 1.21273 1.21169 1.21798 0.98999 0.92275 0.90837 0.91753 1.21670 1.01290 0.98828 0.93489 1.21577 1.00147 0.95444 0.98661 1.21537 1.01631 0.95762 0.95616 1.21209 0.86733 1.02534 0.99154 0.87734 1.23909 0.91835 0.74784 0.79202 1.90704 1.70097 1.41039 1.35372 1.86493 1.21684 1.71872 1.48049 1.22959 0.77162 1.01549 0.99774 1.21786 1.00585 1.01182 0.97186 1.21600 1.01153 0.95900 0.95151 0.92754 0.93513 0.93361 0.92125 0.92974 0.92981 0.90877 0.90233 0.93147 0.98158 0.95308 0.93209 0.91399 0.92126 0.92936 0.91730 0.91168 0.90225 0.91321 0.91457 0.90476 0.91633 0.91585 0.90055 0.90075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.91 37.15 0.37 -1.80 16 2 C -0.12 -1.88 5.93 -26.73 -0.16 -2.03 16 3 C -0.15 -2.98 4.53 -26.73 -0.12 -3.10 16 4 C 0.07 1.34 4.76 -3.82 -0.02 1.32 16 5 N -0.53 -11.57 4.59 -228.09 -1.05 -12.62 16 6 C 0.19 4.99 4.21 -4.98 -0.02 4.97 16 7 C -0.50 -14.24 8.31 -34.44 -0.29 -14.52 16 8 H 0.06 1.74 7.14 -52.49 -0.37 1.36 16 9 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 10 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 11 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 12 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 14 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 15 C 0.07 1.29 1.24 -67.71 -0.08 1.20 16 16 H 0.06 1.33 3.64 -51.93 -0.19 1.14 16 17 C -0.11 -1.73 4.97 -26.73 -0.13 -1.86 16 18 C -0.12 -1.50 5.70 -26.73 -0.15 -1.65 16 19 C -0.11 -1.22 5.39 -26.73 -0.14 -1.36 16 20 C -0.08 -1.05 3.11 -91.77 -0.29 -1.33 16 21 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 22 C 0.46 7.16 5.74 36.01 0.21 7.37 16 23 O -0.49 -9.41 13.41 -18.75 -0.25 -9.66 16 24 O -0.36 -4.85 10.12 -39.25 -0.40 -5.25 16 25 C 0.06 0.68 6.19 37.16 0.23 0.91 16 26 C -0.15 -1.19 10.29 37.16 0.38 -0.81 16 27 C -0.10 -1.74 4.03 -26.73 -0.11 -1.85 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.05 1.01 6.32 -51.93 -0.33 0.68 16 34 H 0.07 1.68 6.50 -51.93 -0.34 1.34 16 35 H 0.08 1.75 6.65 -51.93 -0.35 1.40 16 36 H 0.05 0.90 6.34 -51.93 -0.33 0.57 16 37 H 0.00 0.02 6.30 -51.93 -0.33 -0.31 16 38 H 0.03 0.81 5.84 -51.93 -0.30 0.51 16 39 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.06 0.92 6.42 -51.93 -0.33 0.59 16 42 H 0.05 0.71 7.22 -51.93 -0.37 0.34 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.07 0.69 8.11 -51.93 -0.42 0.27 16 45 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.07 0.82 8.13 -51.93 -0.42 0.39 16 47 H 0.07 0.78 8.13 -51.93 -0.42 0.36 16 48 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 51 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 52 H 0.08 1.66 6.15 -51.93 -0.32 1.34 16 LS Contribution 389.12 15.07 5.86 5.86 Total: -1.00 -31.74 389.12 -10.00 -41.74 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -9.46 Total: 2.47 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: -0.42 Total: -13.07 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: -0.31 Total: -39.12 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -0.65 Total: -14.91 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.74 -10.00 -41.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255367024.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.704 kcal (2) G-P(sol) polarization free energy of solvation -31.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds