Wall clock time and date at job start Fri Apr 10 2020 22:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47129 * 2 1 4 4 C 1.52995 * 109.47348 * 180.02562 * 3 2 1 5 5 N 1.46904 * 109.47276 * 181.23160 * 4 3 2 6 6 C 1.46897 * 110.99859 * 295.30462 * 5 4 3 7 7 C 1.50699 * 109.47049 * 296.74907 * 6 5 4 8 8 H 1.08000 * 120.00057 * 354.94690 * 7 6 5 9 9 C 1.37879 * 119.99822 * 174.95493 * 7 6 5 10 10 N 1.31511 * 120.00108 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99650 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47300 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47267 * 119.99908 * 11 9 7 14 14 H 1.48500 * 109.46897 * 239.99720 * 11 9 7 15 15 C 1.46900 * 110.99950 * 59.25821 * 5 4 3 16 16 H 1.09002 * 109.47100 * 300.00280 * 15 5 4 17 17 C 1.53000 * 109.47231 * 59.99967 * 15 5 4 18 18 C 1.53002 * 109.47156 * 180.02562 * 17 15 5 19 19 C 1.53002 * 109.47128 * 300.00099 * 18 17 15 20 20 C 1.53000 * 109.47183 * 59.99917 * 19 18 17 21 21 H 1.08996 * 109.47457 * 179.97438 * 20 19 18 22 22 C 1.50703 * 109.47231 * 60.00008 * 20 19 18 23 23 O 1.20830 * 120.00266 * 240.00465 * 22 20 19 24 24 O 1.34226 * 119.99941 * 60.00042 * 22 20 19 25 25 C 1.45198 * 117.00367 * 180.02562 * 24 22 20 26 26 C 1.52997 * 109.47371 * 180.02562 * 25 24 22 27 27 C 1.53002 * 109.47156 * 300.00066 * 20 19 18 28 28 H 1.08995 * 109.47595 * 60.00075 * 1 2 3 29 29 H 1.09004 * 109.46918 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47363 * 300.00017 * 1 2 3 31 31 H 1.09003 * 109.47363 * 239.99983 * 2 1 3 32 32 H 1.08995 * 109.47595 * 119.99925 * 2 1 3 33 33 H 1.09003 * 109.47012 * 59.99768 * 3 2 1 34 34 H 1.09003 * 109.47049 * 300.00132 * 3 2 1 35 35 H 1.08996 * 109.47263 * 61.23039 * 4 3 2 36 36 H 1.08997 * 109.47270 * 301.22979 * 4 3 2 37 37 H 1.08997 * 109.47298 * 56.75048 * 6 5 4 38 38 H 1.08997 * 109.47118 * 176.75008 * 6 5 4 39 39 H 0.97002 * 119.99649 * 180.02562 * 10 9 7 40 40 H 1.08999 * 109.47313 * 60.00063 * 17 15 5 41 41 H 1.08997 * 109.47072 * 299.99909 * 17 15 5 42 42 H 1.08999 * 109.47126 * 59.99742 * 18 17 15 43 43 H 1.08998 * 109.47233 * 180.02562 * 18 17 15 44 44 H 1.08996 * 109.47388 * 179.97438 * 19 18 17 45 45 H 1.09002 * 109.47136 * 300.00238 * 19 18 17 46 46 H 1.09001 * 109.46765 * 300.00332 * 25 24 22 47 47 H 1.09005 * 109.47150 * 60.00093 * 25 24 22 48 48 H 1.09003 * 109.47232 * 180.02562 * 26 25 24 49 49 H 1.09000 * 109.46948 * 299.99652 * 26 25 24 50 50 H 1.08998 * 109.47304 * 59.99764 * 26 25 24 51 51 H 1.08999 * 109.47126 * 300.00258 * 27 20 19 52 52 H 1.08998 * 109.47233 * 179.97438 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0596 2.8273 0.0291 6 6 3.6818 3.5456 -1.1953 7 6 4.3424 2.8952 -2.3834 8 1 5.0427 2.0863 -2.2361 9 6 4.0529 3.3328 -3.6584 10 7 3.1998 4.3175 -3.8377 11 14 4.8723 2.5269 -5.1310 12 1 5.7839 1.4520 -4.6635 13 1 3.8336 1.9446 -6.0182 14 1 5.6512 3.5440 -5.8820 15 6 3.5746 3.5316 1.2236 16 1 2.4847 3.5463 1.2192 17 6 4.0698 2.8090 2.4780 18 6 3.5642 3.5423 3.7220 19 6 4.0931 4.9779 3.7181 20 6 3.5979 5.7005 2.4637 21 1 3.9743 6.7234 2.4611 22 6 2.0910 5.7203 2.4573 23 8 1.4837 5.2012 1.5508 24 8 1.4234 6.3146 3.4587 25 6 -0.0267 6.2950 3.3873 26 6 -0.6072 7.0154 4.6058 27 6 4.1035 4.9673 1.2196 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.6765 1.9564 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.9329 0.9482 -0.9016 36 1 3.9336 0.9097 0.8778 37 1 2.5993 3.5112 -1.3175 38 1 4.0063 4.5836 -1.1223 39 1 2.9959 4.6251 -4.7348 40 1 5.1597 2.7943 2.4824 41 1 3.6926 1.7864 2.4810 42 1 2.4743 3.5566 3.7174 43 1 3.9174 3.0278 4.6157 44 1 3.7326 5.5005 4.6041 45 1 5.1830 4.9636 3.7226 46 1 -0.3525 6.7998 2.4778 47 1 -0.3759 5.2624 3.3747 48 1 -1.6958 7.0002 4.5524 49 1 -0.2814 6.5108 5.5154 50 1 -0.2580 8.0478 4.6180 51 1 5.1934 4.9529 1.2243 52 1 3.7503 5.4818 0.3260 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255367024.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:41:00 Heat of formation + Delta-G solvation = -128.877639 kcal Electronic energy + Delta-G solvation = -28402.296490 eV Core-core repulsion = 24786.079921 eV Total energy + Delta-G solvation = -3616.216569 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.07388 -40.04616 -37.93961 -37.18848 -35.37169 -34.41744 -32.78750 -32.04463 -30.82564 -29.80452 -27.58646 -25.85974 -24.89783 -23.86016 -23.39733 -22.42544 -22.37481 -20.95097 -20.26356 -18.47705 -18.37639 -17.71359 -17.09039 -17.00056 -16.54226 -16.10119 -16.00374 -15.37512 -15.22483 -14.99263 -14.63049 -14.53723 -14.33793 -14.18602 -13.69462 -13.57489 -13.46932 -13.36251 -13.07028 -13.00308 -12.94126 -12.87262 -12.68515 -12.56039 -12.48026 -12.27548 -12.19605 -11.97961 -11.92181 -11.85015 -11.74882 -11.54181 -11.37399 -11.32651 -11.05582 -10.92276 -10.76012 -10.52891 -8.75681 -8.16757 -6.26422 1.21156 1.38091 1.38527 1.52416 1.68786 2.40312 3.15147 3.28464 3.66552 3.74068 3.81510 3.96381 3.99836 4.01962 4.07926 4.19961 4.22856 4.27404 4.32226 4.35388 4.44622 4.51241 4.54080 4.63330 4.69974 4.80428 4.83119 4.86854 4.89223 4.91027 4.95735 5.03934 5.08041 5.09557 5.14473 5.20138 5.21504 5.23904 5.27600 5.30170 5.35259 5.40738 5.42872 5.49429 5.57081 5.64075 5.75046 6.13899 6.45147 6.77938 6.80572 6.93377 7.42870 8.94185 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.012265 B = 0.004341 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.461992 B = 6449.023790 C = 6952.462466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.113 4.113 3 C -0.140 4.140 4 C 0.068 3.932 5 N -0.535 5.535 6 C 0.213 3.787 7 C -0.515 4.515 8 H 0.062 0.938 9 C -0.001 4.001 10 N -0.937 5.937 11 Si 0.965 3.035 12 H -0.261 1.261 13 H -0.282 1.282 14 H -0.278 1.278 15 C 0.067 3.933 16 H 0.041 0.959 17 C -0.107 4.107 18 C -0.116 4.116 19 C -0.100 4.100 20 C -0.073 4.073 21 H 0.131 0.869 22 C 0.462 3.538 23 O -0.536 6.536 24 O -0.354 6.354 25 C 0.051 3.949 26 C -0.141 4.141 27 C -0.097 4.097 28 H 0.034 0.966 29 H 0.074 0.926 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.080 0.920 33 H 0.048 0.952 34 H 0.021 0.979 35 H 0.057 0.943 36 H 0.084 0.916 37 H -0.043 1.043 38 H 0.003 0.997 39 H 0.261 0.739 40 H 0.077 0.923 41 H 0.060 0.940 42 H 0.036 0.964 43 H 0.097 0.903 44 H 0.095 0.905 45 H 0.102 0.898 46 H 0.056 0.944 47 H 0.060 0.940 48 H 0.096 0.904 49 H 0.074 0.926 50 H 0.071 0.929 51 H 0.089 0.911 52 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.748 0.407 20.960 21.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.151 4.151 3 C -0.180 4.180 4 C -0.060 4.060 5 N -0.257 5.257 6 C 0.086 3.914 7 C -0.554 4.554 8 H 0.080 0.920 9 C -0.198 4.198 10 N -0.579 5.579 11 Si 0.790 3.210 12 H -0.184 1.184 13 H -0.208 1.208 14 H -0.204 1.204 15 C -0.041 4.041 16 H 0.058 0.942 17 C -0.145 4.145 18 C -0.154 4.154 19 C -0.138 4.138 20 C -0.093 4.093 21 H 0.149 0.851 22 C 0.306 3.694 23 O -0.425 6.425 24 O -0.271 6.271 25 C -0.023 4.023 26 C -0.197 4.197 27 C -0.135 4.135 28 H 0.053 0.947 29 H 0.093 0.907 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.067 0.933 34 H 0.040 0.960 35 H 0.075 0.925 36 H 0.102 0.898 37 H -0.026 1.026 38 H 0.021 0.979 39 H 0.070 0.930 40 H 0.095 0.905 41 H 0.079 0.921 42 H 0.055 0.945 43 H 0.116 0.884 44 H 0.114 0.886 45 H 0.120 0.880 46 H 0.074 0.926 47 H 0.078 0.922 48 H 0.115 0.885 49 H 0.093 0.907 50 H 0.090 0.910 51 H 0.108 0.892 52 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -2.516 0.357 20.600 20.756 hybrid contribution -1.222 0.095 -1.935 2.291 sum -3.738 0.452 18.665 19.041 Atomic orbital electron populations 1.21738 0.95584 1.02169 1.00932 1.21415 0.96186 0.95139 1.02321 1.22036 0.98567 0.97823 0.99536 1.22055 0.91819 0.90661 1.01446 1.62328 1.58763 1.02413 1.02220 1.19300 0.91810 0.93055 0.87197 1.21536 1.24591 1.17939 0.91300 0.91988 1.25907 0.95910 0.95775 1.02187 1.70143 1.36133 1.29050 1.22529 0.85391 0.78320 0.78597 0.78674 1.18447 1.20766 1.20360 1.21908 0.97827 0.93342 0.91033 0.94168 1.21619 1.01712 0.98619 0.92572 1.21574 0.99214 0.96307 0.98270 1.21590 1.02926 0.94629 0.94613 1.21268 0.85419 1.03916 0.98673 0.85103 1.24339 0.92706 0.73661 0.78666 1.90709 1.71200 1.43324 1.37301 1.86489 1.22781 1.71012 1.46826 1.23228 0.76142 1.01668 1.01259 1.21790 1.01524 1.00952 0.95483 1.21486 1.01441 0.95216 0.95362 0.94678 0.90665 0.92914 0.92497 0.90177 0.93317 0.95975 0.92467 0.89776 1.02557 0.97909 0.93041 0.90473 0.92149 0.94502 0.88450 0.88616 0.87970 0.92576 0.92150 0.88545 0.90658 0.90998 0.89218 0.94800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.22 9.91 71.98 0.71 -3.50 16 2 C -0.11 -3.57 5.93 30.59 0.18 -3.38 16 3 C -0.14 -5.71 4.53 30.59 0.14 -5.57 16 4 C 0.07 2.81 4.76 86.30 0.41 3.23 16 5 N -0.53 -24.36 4.59 -875.54 -4.02 -28.38 16 6 C 0.21 12.11 4.21 85.56 0.36 12.47 16 7 C -0.52 -30.60 8.31 25.60 0.21 -30.39 16 8 H 0.06 3.60 7.14 -2.91 -0.02 3.58 16 9 C 0.00 -0.04 5.46 84.66 0.46 0.43 16 10 N -0.94 -59.77 13.29 21.45 0.28 -59.48 16 11 Si 0.97 46.30 29.54 68.60 2.03 48.32 16 12 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 13 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 14 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 15 C 0.07 2.57 1.24 44.92 0.06 2.62 16 16 H 0.04 1.78 3.64 -2.39 -0.01 1.77 16 17 C -0.11 -3.05 4.97 30.59 0.15 -2.90 16 18 C -0.12 -2.54 5.70 30.60 0.17 -2.36 16 19 C -0.10 -1.91 5.39 30.59 0.16 -1.75 16 20 C -0.07 -1.95 3.11 -11.54 -0.04 -1.98 16 21 H 0.13 2.80 8.14 -2.39 -0.02 2.78 16 22 C 0.46 14.65 5.74 71.24 0.41 15.05 16 23 O -0.54 -22.31 13.41 21.95 0.29 -22.02 16 24 O -0.35 -9.22 10.12 -51.38 -0.52 -9.74 16 25 C 0.05 1.16 6.19 71.98 0.45 1.60 16 26 C -0.14 -1.97 10.29 71.98 0.74 -1.23 16 27 C -0.10 -3.50 4.03 30.60 0.12 -3.37 16 28 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.05 1.98 6.32 -2.39 -0.02 1.97 16 34 H 0.02 1.10 6.50 -2.39 -0.02 1.08 16 35 H 0.06 2.60 6.65 -2.39 -0.02 2.58 16 36 H 0.08 2.90 6.34 -2.39 -0.02 2.88 16 37 H -0.04 -2.80 6.30 -2.39 -0.02 -2.82 16 38 H 0.00 0.18 5.84 -2.39 -0.01 0.17 16 39 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 40 H 0.08 2.07 8.14 -2.39 -0.02 2.06 16 41 H 0.06 1.70 6.42 -2.39 -0.02 1.69 16 42 H 0.04 0.93 7.22 -2.39 -0.02 0.92 16 43 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.10 1.44 8.11 -2.39 -0.02 1.42 16 45 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.06 1.40 8.13 -2.39 -0.02 1.38 16 47 H 0.06 1.45 8.13 -2.38 -0.02 1.43 16 48 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 49 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 50 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 51 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 52 H 0.03 1.51 6.15 -2.39 -0.01 1.50 16 Total: -1.00 -75.63 389.12 3.65 -71.98 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 0.87 Total: 20.36 kcal Atomic # 6 Polarization: -25.75 SS G_CDS: 4.71 Total: -21.04 kcal Atomic # 7 Polarization: -84.13 SS G_CDS: -3.74 Total: -87.87 kcal Atomic # 8 Polarization: -31.53 SS G_CDS: -0.23 Total: -31.76 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.32 kcal Total: -75.63 3.65 -71.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255367024.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.894 kcal (2) G-P(sol) polarization free energy of solvation -75.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds