Wall clock time and date at job start Fri Apr 10 2020 22:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47184 * 2 1 4 4 C 1.52998 * 109.47075 * 180.02562 * 3 2 1 5 5 N 1.46904 * 109.47458 * 185.32235 * 4 3 2 6 6 C 1.46898 * 111.00045 * 160.29752 * 5 4 3 7 7 C 1.50700 * 109.47109 * 288.26100 * 6 5 4 8 8 H 1.08006 * 120.00164 * 354.93324 * 7 6 5 9 9 C 1.37879 * 120.00378 * 174.92609 * 7 6 5 10 10 N 1.31507 * 120.00306 * 179.97438 * 9 7 6 11 11 Si 1.86805 * 119.99594 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47252 * 89.99830 * 11 9 7 13 13 H 1.48498 * 109.46762 * 209.99873 * 11 9 7 14 14 H 1.48504 * 109.46869 * 329.99865 * 11 9 7 15 15 C 1.46900 * 110.99827 * 284.25285 * 5 4 3 16 16 H 1.09002 * 109.47051 * 54.99799 * 15 5 4 17 17 C 1.53003 * 109.46783 * 294.99507 * 15 5 4 18 18 C 1.53005 * 109.46719 * 180.02562 * 17 15 5 19 19 C 1.53001 * 109.47107 * 60.00038 * 18 17 15 20 20 C 1.53004 * 109.47009 * 299.99851 * 19 18 17 21 21 H 1.08999 * 109.46688 * 180.02562 * 20 19 18 22 22 C 1.50695 * 109.47312 * 299.99999 * 20 19 18 23 23 O 1.20827 * 120.00174 * 119.99894 * 22 20 19 24 24 O 1.34234 * 120.00104 * 300.00134 * 22 20 19 25 25 C 1.45200 * 117.00213 * 179.97438 * 24 22 20 26 26 C 1.53000 * 109.47402 * 179.97438 * 25 24 22 27 27 C 1.52996 * 109.47136 * 60.00269 * 20 19 18 28 28 H 1.08996 * 109.47331 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46982 * 300.00485 * 1 2 3 30 30 H 1.09003 * 109.46836 * 59.99647 * 1 2 3 31 31 H 1.09004 * 109.46982 * 239.99515 * 2 1 3 32 32 H 1.08995 * 109.47026 * 120.00138 * 2 1 3 33 33 H 1.08994 * 109.47556 * 60.00019 * 3 2 1 34 34 H 1.09003 * 109.47522 * 299.99933 * 3 2 1 35 35 H 1.09004 * 109.47640 * 65.31971 * 4 3 2 36 36 H 1.09007 * 109.47291 * 305.32244 * 4 3 2 37 37 H 1.08994 * 109.47138 * 48.26275 * 6 5 4 38 38 H 1.09001 * 109.46843 * 168.26403 * 6 5 4 39 39 H 0.97004 * 120.00116 * 180.02562 * 10 9 7 40 40 H 1.08990 * 109.47213 * 299.99981 * 17 15 5 41 41 H 1.08998 * 109.47042 * 60.00954 * 17 15 5 42 42 H 1.08993 * 109.47184 * 180.02562 * 18 17 15 43 43 H 1.09002 * 109.46869 * 300.00141 * 18 17 15 44 44 H 1.08993 * 109.47036 * 60.00384 * 19 18 17 45 45 H 1.09003 * 109.46777 * 179.97438 * 19 18 17 46 46 H 1.09005 * 109.46817 * 300.00296 * 25 24 22 47 47 H 1.08997 * 109.46927 * 59.99679 * 25 24 22 48 48 H 1.08996 * 109.46857 * 60.00167 * 26 25 24 49 49 H 1.08992 * 109.47219 * 179.97438 * 26 25 24 50 50 H 1.09003 * 109.46706 * 300.00262 * 26 25 24 51 51 H 1.09003 * 109.47207 * 179.97438 * 27 20 19 52 52 H 1.09002 * 109.46952 * 59.99618 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0599 2.8214 0.1278 6 6 5.4528 2.8440 0.5937 7 6 5.5039 2.4397 2.0446 8 1 4.5875 2.2703 2.5906 9 6 6.7204 2.2859 2.6750 10 7 6.7650 1.9336 3.9413 11 14 8.3054 2.5795 1.7309 12 1 8.7003 4.0053 1.8578 13 1 9.3792 1.7171 2.2862 14 1 8.0964 2.2493 0.2982 15 6 3.9165 3.5511 -1.1390 16 1 2.8793 3.5029 -1.4708 17 6 4.8208 2.9170 -2.1979 18 6 4.6719 3.6775 -3.5172 19 6 5.0747 5.1391 -3.3116 20 6 4.1704 5.7732 -2.2527 21 1 4.4571 6.8146 -2.1066 22 6 2.7366 5.7070 -2.7116 23 8 1.9177 5.1126 -2.0513 24 8 2.3691 6.3084 -3.8540 25 6 0.9718 6.2030 -4.2346 26 6 0.7449 6.9452 -5.5532 27 6 4.3193 5.0128 -0.9334 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6768 1.9563 0.8899 34 1 1.6768 1.9563 -0.8900 35 1 3.9331 1.0134 -0.9347 36 1 3.9338 0.8481 0.8376 37 1 6.0455 2.1471 0.0012 38 1 5.8568 3.8503 0.4825 39 1 7.6208 1.8258 4.3849 40 1 5.8578 2.9653 -1.8662 41 1 4.5340 1.8756 -2.3441 42 1 5.3157 3.2255 -4.2717 43 1 3.6348 3.6296 -3.8491 44 1 6.1117 5.1870 -2.9798 45 1 4.9690 5.6807 -4.2517 46 1 0.7071 5.1528 -4.3581 47 1 0.3491 6.6456 -3.4572 48 1 1.3676 6.5029 -6.3308 49 1 -0.3038 6.8657 -5.8391 50 1 1.0096 7.9953 -5.4292 51 1 3.6754 5.4648 -0.1789 52 1 5.3564 5.0607 -0.6015 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255367025.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:41:05 Heat of formation + Delta-G solvation = -108.830253 kcal Electronic energy + Delta-G solvation = -28137.914440 eV Core-core repulsion = 24522.567191 eV Total energy + Delta-G solvation = -3615.347249 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.96024 -38.80813 -36.66332 -35.83169 -34.12057 -32.42466 -31.91028 -30.88745 -29.51504 -28.78955 -26.09056 -24.71877 -23.09018 -22.47046 -22.24488 -21.69126 -20.56629 -19.86074 -18.77835 -17.34505 -16.90532 -16.62709 -15.85841 -15.66297 -14.87062 -14.80526 -14.41799 -14.05878 -13.84935 -13.73804 -13.54358 -13.51125 -13.08569 -12.95049 -12.69615 -12.33215 -12.29047 -12.18507 -12.05462 -11.94103 -11.76573 -11.74766 -11.64102 -11.04339 -10.91246 -10.82992 -10.75220 -10.63286 -10.56130 -10.47340 -10.17353 -10.06261 -10.01120 -9.96651 -9.75446 -9.36273 -9.16593 -8.50480 -7.14611 -5.99643 -3.95274 2.28595 2.64270 3.29353 3.37281 3.38130 4.45255 4.48709 4.65989 4.70615 4.78298 4.79847 4.89212 5.05178 5.11024 5.29073 5.31315 5.34408 5.36537 5.42099 5.50669 5.52725 5.54081 5.59476 5.60747 5.69455 5.71497 5.86159 5.90692 5.97725 6.06336 6.11250 6.13249 6.20301 6.22441 6.25353 6.31261 6.37548 6.40100 6.47602 6.58343 6.67392 6.81401 6.84275 6.91879 7.04485 7.12727 7.72173 7.83873 8.07524 8.21826 8.76700 9.12707 9.63198 11.13893 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.011539 B = 0.004684 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.906398 B = 5976.553213 C = 7666.489513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C -0.110 4.110 4 C 0.060 3.940 5 N -0.517 5.517 6 C 0.156 3.844 7 C -0.502 4.502 8 H 0.080 0.920 9 C 0.067 3.933 10 N -0.902 5.902 11 Si 0.870 3.130 12 H -0.276 1.276 13 H -0.287 1.287 14 H -0.267 1.267 15 C 0.074 3.926 16 H 0.098 0.902 17 C -0.160 4.160 18 C -0.116 4.116 19 C -0.110 4.110 20 C -0.077 4.077 21 H 0.107 0.893 22 C 0.465 3.535 23 O -0.492 6.492 24 O -0.362 6.362 25 C 0.060 3.940 26 C -0.151 4.151 27 C -0.100 4.100 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.051 0.949 35 H 0.021 0.979 36 H 0.084 0.916 37 H -0.010 1.010 38 H 0.026 0.974 39 H 0.262 0.738 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.053 0.947 44 H 0.079 0.921 45 H 0.072 0.928 46 H 0.068 0.932 47 H 0.068 0.932 48 H 0.065 0.935 49 H 0.077 0.923 50 H 0.065 0.935 51 H 0.079 0.921 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.994 6.678 -19.115 22.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.148 4.148 4 C -0.068 4.068 5 N -0.239 5.239 6 C 0.030 3.970 7 C -0.541 4.541 8 H 0.098 0.902 9 C -0.134 4.134 10 N -0.542 5.542 11 Si 0.698 3.302 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.192 1.192 15 C -0.035 4.035 16 H 0.116 0.884 17 C -0.199 4.199 18 C -0.154 4.154 19 C -0.148 4.148 20 C -0.097 4.097 21 H 0.124 0.876 22 C 0.307 3.693 23 O -0.378 6.378 24 O -0.279 6.279 25 C -0.014 4.014 26 C -0.208 4.208 27 C -0.137 4.137 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.039 0.961 36 H 0.103 0.897 37 H 0.008 0.992 38 H 0.043 0.957 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.097 0.903 45 H 0.090 0.910 46 H 0.086 0.914 47 H 0.087 0.913 48 H 0.084 0.916 49 H 0.096 0.904 50 H 0.084 0.916 51 H 0.098 0.902 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.437 6.694 -18.402 21.737 hybrid contribution 1.337 -0.313 -0.961 1.676 sum -8.100 6.381 -19.363 21.938 Atomic orbital electron populations 1.21748 0.96452 1.00789 1.01586 1.21498 0.95239 0.97786 1.01642 1.21557 0.96010 0.95253 1.02022 1.22058 0.94050 0.90497 1.00202 1.62105 1.23212 1.13592 1.25003 1.20270 0.84604 0.95806 0.96356 1.21098 0.94379 1.45078 0.93518 0.90176 1.24906 0.98656 0.95124 0.94737 1.69898 1.25507 1.48553 1.10248 0.86938 0.84056 0.78480 0.80757 1.20226 1.21340 1.19231 1.21996 0.99973 0.92567 0.88931 0.88446 1.22353 1.01891 0.99879 0.95788 1.21513 1.00830 0.95053 0.98020 1.21555 0.99389 0.96086 0.97749 1.21214 0.87857 1.02830 0.97787 0.87552 1.23890 0.92079 0.75178 0.78111 1.90649 1.53544 1.39099 1.54510 1.86512 1.30130 1.70322 1.40976 1.22971 0.79583 1.01424 0.97417 1.21793 1.02293 1.01129 0.95630 1.21581 1.03234 0.95328 0.93566 0.93372 0.92756 0.93226 0.92813 0.91871 0.91329 0.93005 0.96093 0.89711 0.99226 0.95650 0.92820 0.91496 0.91888 0.91872 0.92808 0.90255 0.90955 0.91388 0.91340 0.91575 0.90426 0.91562 0.90205 0.89904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.91 37.16 0.37 -1.52 16 2 C -0.12 -1.81 5.93 -26.73 -0.16 -1.97 16 3 C -0.11 -1.90 5.24 -26.73 -0.14 -2.04 16 4 C 0.06 1.18 4.70 -3.82 -0.02 1.17 16 5 N -0.52 -10.94 4.37 -228.08 -1.00 -11.94 16 6 C 0.16 3.73 2.73 -4.98 -0.01 3.71 16 7 C -0.50 -14.29 8.84 -34.44 -0.30 -14.59 16 8 H 0.08 2.52 8.05 -52.48 -0.42 2.10 16 9 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 10 N -0.90 -27.83 13.96 55.43 0.77 -27.05 16 11 Si 0.87 21.42 27.57 -169.99 -4.69 16.74 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 13 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 14 H -0.27 -6.32 6.40 56.52 0.36 -5.96 16 15 C 0.07 1.31 1.85 -67.71 -0.13 1.19 16 16 H 0.10 1.80 4.22 -51.93 -0.22 1.58 16 17 C -0.16 -2.55 4.58 -26.73 -0.12 -2.68 16 18 C -0.12 -1.48 5.70 -26.73 -0.15 -1.63 16 19 C -0.11 -1.25 5.39 -26.73 -0.14 -1.40 16 20 C -0.08 -0.98 3.11 -91.77 -0.29 -1.27 16 21 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 22 C 0.46 6.39 5.74 36.00 0.21 6.60 16 23 O -0.49 -8.15 13.41 -18.75 -0.25 -8.40 16 24 O -0.36 -4.30 10.12 -39.27 -0.40 -4.70 16 25 C 0.06 0.58 6.19 37.16 0.23 0.81 16 26 C -0.15 -1.02 10.29 37.16 0.38 -0.64 16 27 C -0.10 -1.61 4.22 -26.73 -0.11 -1.73 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.05 0.89 7.04 -51.93 -0.37 0.52 16 35 H 0.02 0.39 5.88 -51.93 -0.31 0.09 16 36 H 0.08 1.89 7.11 -51.92 -0.37 1.52 16 37 H -0.01 -0.24 5.83 -51.93 -0.30 -0.55 16 38 H 0.03 0.60 5.36 -51.93 -0.28 0.33 16 39 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.07 1.16 6.75 -51.93 -0.35 0.81 16 41 H 0.06 1.03 6.25 -51.93 -0.32 0.70 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.05 0.70 7.22 -51.93 -0.37 0.33 16 44 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 46 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 47 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 48 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 51 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 52 H 0.08 1.39 6.12 -51.93 -0.32 1.07 16 LS Contribution 388.27 15.07 5.85 5.85 Total: -1.00 -31.57 388.27 -9.76 -41.33 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -9.56 Total: 2.31 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: -0.49 Total: -14.14 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: -0.22 Total: -38.99 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: -0.65 Total: -13.10 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.69 Total: 16.74 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.57 -9.76 -41.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255367025.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.498 kcal (2) G-P(sol) polarization free energy of solvation -31.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds