Wall clock time and date at job start Fri Apr 10 2020 22:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47184 * 2 1 4 4 C 1.52998 * 109.47075 * 180.02562 * 3 2 1 5 5 N 1.46904 * 109.47458 * 185.32235 * 4 3 2 6 6 C 1.46898 * 111.00045 * 160.29752 * 5 4 3 7 7 C 1.50700 * 109.47109 * 288.26100 * 6 5 4 8 8 H 1.08006 * 120.00164 * 354.93324 * 7 6 5 9 9 C 1.37879 * 120.00378 * 174.92609 * 7 6 5 10 10 N 1.31507 * 120.00306 * 179.97438 * 9 7 6 11 11 Si 1.86805 * 119.99594 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47252 * 89.99830 * 11 9 7 13 13 H 1.48498 * 109.46762 * 209.99873 * 11 9 7 14 14 H 1.48504 * 109.46869 * 329.99865 * 11 9 7 15 15 C 1.46900 * 110.99827 * 284.25285 * 5 4 3 16 16 H 1.09002 * 109.47051 * 54.99799 * 15 5 4 17 17 C 1.53003 * 109.46783 * 294.99507 * 15 5 4 18 18 C 1.53005 * 109.46719 * 180.02562 * 17 15 5 19 19 C 1.53001 * 109.47107 * 60.00038 * 18 17 15 20 20 C 1.53004 * 109.47009 * 299.99851 * 19 18 17 21 21 H 1.08999 * 109.46688 * 180.02562 * 20 19 18 22 22 C 1.50695 * 109.47312 * 299.99999 * 20 19 18 23 23 O 1.20827 * 120.00174 * 119.99894 * 22 20 19 24 24 O 1.34234 * 120.00104 * 300.00134 * 22 20 19 25 25 C 1.45200 * 117.00213 * 179.97438 * 24 22 20 26 26 C 1.53000 * 109.47402 * 179.97438 * 25 24 22 27 27 C 1.52996 * 109.47136 * 60.00269 * 20 19 18 28 28 H 1.08996 * 109.47331 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46982 * 300.00485 * 1 2 3 30 30 H 1.09003 * 109.46836 * 59.99647 * 1 2 3 31 31 H 1.09004 * 109.46982 * 239.99515 * 2 1 3 32 32 H 1.08995 * 109.47026 * 120.00138 * 2 1 3 33 33 H 1.08994 * 109.47556 * 60.00019 * 3 2 1 34 34 H 1.09003 * 109.47522 * 299.99933 * 3 2 1 35 35 H 1.09004 * 109.47640 * 65.31971 * 4 3 2 36 36 H 1.09007 * 109.47291 * 305.32244 * 4 3 2 37 37 H 1.08994 * 109.47138 * 48.26275 * 6 5 4 38 38 H 1.09001 * 109.46843 * 168.26403 * 6 5 4 39 39 H 0.97004 * 120.00116 * 180.02562 * 10 9 7 40 40 H 1.08990 * 109.47213 * 299.99981 * 17 15 5 41 41 H 1.08998 * 109.47042 * 60.00954 * 17 15 5 42 42 H 1.08993 * 109.47184 * 180.02562 * 18 17 15 43 43 H 1.09002 * 109.46869 * 300.00141 * 18 17 15 44 44 H 1.08993 * 109.47036 * 60.00384 * 19 18 17 45 45 H 1.09003 * 109.46777 * 179.97438 * 19 18 17 46 46 H 1.09005 * 109.46817 * 300.00296 * 25 24 22 47 47 H 1.08997 * 109.46927 * 59.99679 * 25 24 22 48 48 H 1.08996 * 109.46857 * 60.00167 * 26 25 24 49 49 H 1.08992 * 109.47219 * 179.97438 * 26 25 24 50 50 H 1.09003 * 109.46706 * 300.00262 * 26 25 24 51 51 H 1.09003 * 109.47207 * 179.97438 * 27 20 19 52 52 H 1.09002 * 109.46952 * 59.99618 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0599 2.8214 0.1278 6 6 5.4528 2.8440 0.5937 7 6 5.5039 2.4397 2.0446 8 1 4.5875 2.2703 2.5906 9 6 6.7204 2.2859 2.6750 10 7 6.7650 1.9336 3.9413 11 14 8.3054 2.5795 1.7309 12 1 8.7003 4.0053 1.8578 13 1 9.3792 1.7171 2.2862 14 1 8.0964 2.2493 0.2982 15 6 3.9165 3.5511 -1.1390 16 1 2.8793 3.5029 -1.4708 17 6 4.8208 2.9170 -2.1979 18 6 4.6719 3.6775 -3.5172 19 6 5.0747 5.1391 -3.3116 20 6 4.1704 5.7732 -2.2527 21 1 4.4571 6.8146 -2.1066 22 6 2.7366 5.7070 -2.7116 23 8 1.9177 5.1126 -2.0513 24 8 2.3691 6.3084 -3.8540 25 6 0.9718 6.2030 -4.2346 26 6 0.7449 6.9452 -5.5532 27 6 4.3193 5.0128 -0.9334 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6768 1.9563 0.8899 34 1 1.6768 1.9563 -0.8900 35 1 3.9331 1.0134 -0.9347 36 1 3.9338 0.8481 0.8376 37 1 6.0455 2.1471 0.0012 38 1 5.8568 3.8503 0.4825 39 1 7.6208 1.8258 4.3849 40 1 5.8578 2.9653 -1.8662 41 1 4.5340 1.8756 -2.3441 42 1 5.3157 3.2255 -4.2717 43 1 3.6348 3.6296 -3.8491 44 1 6.1117 5.1870 -2.9798 45 1 4.9690 5.6807 -4.2517 46 1 0.7071 5.1528 -4.3581 47 1 0.3491 6.6456 -3.4572 48 1 1.3676 6.5029 -6.3308 49 1 -0.3038 6.8657 -5.8391 50 1 1.0096 7.9953 -5.4292 51 1 3.6754 5.4648 -0.1789 52 1 5.3564 5.0607 -0.6015 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255367025.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:41:04 Heat of formation + Delta-G solvation = -126.921591 kcal Electronic energy + Delta-G solvation = -28138.698939 eV Core-core repulsion = 24522.567191 eV Total energy + Delta-G solvation = -3616.131748 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.06125 -40.10744 -37.82523 -37.05343 -35.57200 -34.46803 -32.71523 -31.97830 -30.82723 -30.53803 -27.72488 -25.71557 -24.34850 -24.02521 -23.41218 -22.79055 -21.96214 -21.03727 -20.22966 -18.97999 -18.38078 -17.68923 -16.99834 -16.91667 -16.55965 -16.10648 -15.70713 -15.46553 -15.28091 -15.09252 -14.73986 -14.57192 -14.54377 -14.16817 -13.88350 -13.69807 -13.55667 -13.37892 -13.13925 -13.08064 -13.01421 -12.86442 -12.80826 -12.46918 -12.39040 -12.14123 -12.06274 -11.95275 -11.85227 -11.77028 -11.54317 -11.48945 -11.44999 -11.35252 -11.33328 -11.09803 -10.76822 -10.67687 -8.81509 -8.25170 -6.27224 1.23711 1.34130 1.36610 1.46818 1.71940 2.36084 3.07999 3.15392 3.62961 3.74318 3.76347 3.94433 4.03117 4.09479 4.12521 4.15434 4.17899 4.27038 4.29352 4.37682 4.41538 4.43043 4.51217 4.58407 4.64056 4.73551 4.83299 4.83724 4.89497 4.92836 4.95151 4.97056 4.98987 5.01252 5.09718 5.13793 5.14577 5.18338 5.21706 5.22495 5.28274 5.34279 5.41376 5.46533 5.51633 5.62162 5.63858 6.09466 6.50565 6.76248 6.80181 6.83723 7.36079 8.92155 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.011539 B = 0.004684 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.906398 B = 5976.553213 C = 7666.489513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.120 4.120 3 C -0.098 4.098 4 C 0.064 3.936 5 N -0.539 5.539 6 C 0.173 3.827 7 C -0.511 4.511 8 H 0.029 0.971 9 C 0.005 3.995 10 N -0.952 5.952 11 Si 0.945 3.055 12 H -0.261 1.261 13 H -0.284 1.284 14 H -0.248 1.248 15 C 0.075 3.925 16 H 0.092 0.908 17 C -0.156 4.156 18 C -0.111 4.111 19 C -0.106 4.106 20 C -0.073 4.073 21 H 0.135 0.865 22 C 0.468 3.532 23 O -0.528 6.528 24 O -0.356 6.356 25 C 0.052 3.948 26 C -0.144 4.144 27 C -0.099 4.099 28 H 0.067 0.933 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.044 0.956 34 H 0.056 0.944 35 H 0.034 0.966 36 H 0.048 0.952 37 H -0.011 1.011 38 H 0.035 0.965 39 H 0.265 0.735 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.085 0.915 43 H 0.049 0.951 44 H 0.090 0.910 45 H 0.099 0.901 46 H 0.063 0.937 47 H 0.063 0.937 48 H 0.070 0.930 49 H 0.096 0.904 50 H 0.070 0.930 51 H 0.056 0.944 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.221 7.865 -22.934 25.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.158 4.158 3 C -0.136 4.136 4 C -0.064 4.064 5 N -0.261 5.261 6 C 0.046 3.954 7 C -0.549 4.549 8 H 0.047 0.953 9 C -0.191 4.191 10 N -0.593 5.593 11 Si 0.768 3.232 12 H -0.186 1.186 13 H -0.210 1.210 14 H -0.172 1.172 15 C -0.033 4.033 16 H 0.109 0.891 17 C -0.195 4.195 18 C -0.149 4.149 19 C -0.143 4.143 20 C -0.092 4.092 21 H 0.153 0.847 22 C 0.312 3.688 23 O -0.417 6.417 24 O -0.273 6.273 25 C -0.022 4.022 26 C -0.201 4.201 27 C -0.137 4.137 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.052 0.948 36 H 0.067 0.933 37 H 0.007 0.993 38 H 0.052 0.948 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.103 0.897 43 H 0.068 0.932 44 H 0.108 0.892 45 H 0.117 0.883 46 H 0.082 0.918 47 H 0.082 0.918 48 H 0.089 0.911 49 H 0.115 0.885 50 H 0.089 0.911 51 H 0.075 0.925 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.686 7.900 -22.258 25.164 hybrid contribution 0.943 -0.687 0.282 1.200 sum -7.743 7.212 -21.976 24.391 Atomic orbital electron populations 1.21712 0.94513 1.02181 1.01725 1.21475 0.96922 0.95663 1.01782 1.21439 0.94156 0.97070 1.00984 1.21997 0.95604 0.89651 0.99138 1.62030 1.21545 1.14579 1.27957 1.19963 0.86402 0.95724 0.93305 1.21310 0.92742 1.45088 0.95758 0.95265 1.25869 1.02915 0.94657 0.95677 1.70070 1.26755 1.50088 1.12405 0.85750 0.78439 0.79085 0.79933 1.18582 1.21014 1.17174 1.22023 1.00285 0.93217 0.87750 0.89070 1.22271 1.00381 0.99846 0.96970 1.21490 1.01229 0.95811 0.96347 1.21594 0.99343 0.95012 0.98341 1.21209 0.87801 1.04012 0.96220 0.84686 1.24066 0.92170 0.74404 0.78145 1.90643 1.54602 1.40835 1.55668 1.86505 1.31409 1.69590 1.39821 1.23239 0.78361 1.01741 0.98838 1.21802 1.03650 1.00848 0.93789 1.21502 1.02142 0.94631 0.95392 0.91349 0.93330 0.92403 0.91422 0.92972 0.93689 0.92512 0.94764 0.93332 0.99326 0.94760 0.92599 0.92533 0.92628 0.89682 0.93187 0.89179 0.88259 0.91830 0.91827 0.91088 0.88527 0.91128 0.92477 0.90398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 9.91 71.98 0.71 -2.82 16 2 C -0.12 -3.56 5.93 30.59 0.18 -3.38 16 3 C -0.10 -3.53 5.24 30.59 0.16 -3.37 16 4 C 0.06 2.65 4.70 86.30 0.41 3.05 16 5 N -0.54 -23.60 4.37 -875.50 -3.83 -27.42 16 6 C 0.17 8.42 2.73 85.56 0.23 8.65 16 7 C -0.51 -30.44 8.84 25.60 0.23 -30.21 16 8 H 0.03 1.98 8.05 -2.91 -0.02 1.96 16 9 C 0.01 0.32 5.47 84.66 0.46 0.78 16 10 N -0.95 -60.92 13.96 21.45 0.30 -60.62 16 11 Si 0.94 44.27 27.57 68.60 1.89 46.16 16 12 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 13 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 14 H -0.25 -10.77 6.40 99.48 0.64 -10.13 16 15 C 0.08 2.66 1.85 44.92 0.08 2.75 16 16 H 0.09 3.39 4.22 -2.39 -0.01 3.38 16 17 C -0.16 -4.73 4.58 30.60 0.14 -4.59 16 18 C -0.11 -2.48 5.70 30.60 0.17 -2.30 16 19 C -0.11 -1.99 5.39 30.60 0.16 -1.83 16 20 C -0.07 -1.68 3.11 -11.54 -0.04 -1.72 16 21 H 0.14 2.37 8.14 -2.39 -0.02 2.35 16 22 C 0.47 12.11 5.74 71.23 0.41 12.52 16 23 O -0.53 -17.41 13.41 21.96 0.29 -17.11 16 24 O -0.36 -7.62 10.12 -51.45 -0.52 -8.14 16 25 C 0.05 0.92 6.19 71.98 0.45 1.36 16 26 C -0.14 -1.54 10.29 71.98 0.74 -0.80 16 27 C -0.10 -3.15 4.22 30.59 0.13 -3.03 16 28 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 32 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.06 1.97 7.04 -2.39 -0.02 1.96 16 35 H 0.03 1.31 5.88 -2.39 -0.01 1.29 16 36 H 0.05 2.32 7.11 -2.38 -0.02 2.31 16 37 H -0.01 -0.53 5.83 -2.39 -0.01 -0.54 16 38 H 0.03 1.62 5.36 -2.39 -0.01 1.60 16 39 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 40 H 0.06 1.84 6.75 -2.39 -0.02 1.82 16 41 H 0.06 1.74 6.25 -2.39 -0.01 1.73 16 42 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.05 1.17 7.22 -2.39 -0.02 1.15 16 44 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.10 1.43 8.12 -2.39 -0.02 1.41 16 46 H 0.06 1.18 8.13 -2.38 -0.02 1.16 16 47 H 0.06 1.18 8.13 -2.39 -0.02 1.16 16 48 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 49 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 51 H 0.06 2.05 8.10 -2.39 -0.02 2.03 16 52 H 0.08 2.53 6.12 -2.39 -0.01 2.52 16 Total: -1.00 -72.47 388.27 3.57 -68.90 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: 0.80 Total: 23.18 kcal Atomic # 6 Polarization: -29.57 SS G_CDS: 4.64 Total: -24.94 kcal Atomic # 7 Polarization: -84.52 SS G_CDS: -3.53 Total: -88.05 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -0.23 Total: -25.25 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.89 Total: 46.16 kcal Total: -72.47 3.57 -68.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255367025.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.022 kcal (2) G-P(sol) polarization free energy of solvation -72.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds