Wall clock time and date at job start Fri Apr 10 2020 22:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47032 * 2 1 4 4 C 1.52994 * 109.47364 * 179.97438 * 3 2 1 5 5 N 1.46896 * 109.47210 * 179.12688 * 4 3 2 6 6 C 1.46900 * 111.00104 * 291.23053 * 5 4 3 7 7 C 1.50699 * 109.46943 * 296.84271 * 6 5 4 8 8 H 1.08000 * 120.00379 * 4.24125 * 7 6 5 9 9 C 1.37885 * 119.99929 * 184.23645 * 7 6 5 10 10 N 1.31510 * 119.99701 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00019 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47294 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47252 * 119.99785 * 11 9 7 14 14 H 1.48497 * 109.46997 * 239.99924 * 11 9 7 15 15 C 1.46905 * 110.99917 * 167.27549 * 5 4 3 16 16 H 1.08995 * 109.46933 * 60.00114 * 15 5 4 17 17 C 1.52993 * 109.47155 * 300.00068 * 15 5 4 18 18 C 1.53002 * 109.46944 * 179.97438 * 17 15 5 19 19 C 1.53013 * 109.47024 * 60.00222 * 18 17 15 20 20 C 1.53000 * 109.46719 * 300.00008 * 19 18 17 21 21 H 1.09007 * 109.46990 * 299.99516 * 20 19 18 22 22 C 1.50700 * 109.46673 * 180.02562 * 20 19 18 23 23 O 1.20829 * 119.99622 * 239.99564 * 22 20 19 24 24 O 1.34224 * 120.00505 * 59.99721 * 22 20 19 25 25 C 1.45204 * 117.00181 * 179.97438 * 24 22 20 26 26 C 1.52998 * 109.47074 * 179.97438 * 25 24 22 27 27 C 1.52999 * 109.46898 * 179.97438 * 15 5 4 28 28 H 1.09003 * 109.47178 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47456 * 299.99492 * 1 2 3 30 30 H 1.08996 * 109.47134 * 60.00285 * 1 2 3 31 31 H 1.08999 * 109.47456 * 240.00508 * 2 1 3 32 32 H 1.08996 * 109.47134 * 119.99715 * 2 1 3 33 33 H 1.09006 * 109.46837 * 59.99722 * 3 2 1 34 34 H 1.09000 * 109.47256 * 300.00232 * 3 2 1 35 35 H 1.09004 * 109.46949 * 59.12283 * 4 3 2 36 36 H 1.09007 * 109.46953 * 299.12840 * 4 3 2 37 37 H 1.08995 * 109.46962 * 56.84130 * 6 5 4 38 38 H 1.09005 * 109.46995 * 176.84462 * 6 5 4 39 39 H 0.97004 * 119.99656 * 180.02562 * 10 9 7 40 40 H 1.08994 * 109.47318 * 60.00329 * 17 15 5 41 41 H 1.08999 * 109.47689 * 299.99686 * 17 15 5 42 42 H 1.08998 * 109.47614 * 300.00435 * 18 17 15 43 43 H 1.09000 * 109.47501 * 179.97438 * 18 17 15 44 44 H 1.08999 * 109.46908 * 179.97438 * 19 18 17 45 45 H 1.08998 * 109.46751 * 59.99685 * 19 18 17 46 46 H 1.08997 * 109.46826 * 300.00312 * 25 24 22 47 47 H 1.09001 * 109.46575 * 59.99984 * 25 24 22 48 48 H 1.08999 * 109.47206 * 300.00058 * 26 25 24 49 49 H 1.08997 * 109.46891 * 60.00296 * 26 25 24 50 50 H 1.09001 * 109.46751 * 180.02562 * 26 25 24 51 51 H 1.09003 * 109.47291 * 60.00250 * 27 15 5 52 52 H 1.08993 * 109.47509 * 300.00074 * 27 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0595 2.8274 -0.0205 6 6 3.7673 3.4696 -1.3090 7 6 4.5037 2.7481 -2.4082 8 1 5.0713 1.8571 -2.1836 9 6 4.4527 3.2254 -3.7008 10 7 3.7619 4.3105 -3.9742 11 14 5.3648 2.3307 -5.0634 12 1 6.0616 1.1472 -4.4985 13 1 4.3972 1.8883 -6.0993 14 1 6.3614 3.2457 -5.6755 15 6 5.4962 2.8825 0.2814 16 1 6.0460 2.3061 -0.4624 17 6 5.7482 2.2942 1.6710 18 6 7.2446 2.3510 1.9851 19 6 7.7174 3.8059 1.9538 20 6 7.4652 4.3942 0.5641 21 1 8.0149 3.8175 -0.1798 22 6 7.9315 5.8270 0.5331 23 8 7.1473 6.7122 0.2853 24 8 9.2178 6.1197 0.7807 25 6 9.5959 7.5209 0.7332 26 6 11.0887 7.6569 1.0398 27 6 5.9685 4.3374 0.2496 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6765 1.9564 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.9336 0.9151 -0.8812 36 1 3.9329 0.9425 0.8986 37 1 2.6953 3.4272 -1.5012 38 1 4.0900 4.5103 -1.2777 39 1 3.7257 4.6461 -4.8836 40 1 5.4119 1.2577 1.6933 41 1 5.1984 2.8707 2.4150 42 1 7.7942 1.7744 1.2412 43 1 7.4242 1.9323 2.9753 44 1 8.7833 3.8464 2.1780 45 1 7.1677 4.3826 2.6977 46 1 9.3909 7.9190 -0.2606 47 1 9.0211 8.0775 1.4733 48 1 11.2932 7.2589 2.0337 49 1 11.6637 7.1001 0.3000 50 1 11.3724 8.7087 1.0045 51 1 5.4186 4.9143 0.9932 52 1 5.7890 4.7562 -0.7405 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255367026.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:41:08 Heat of formation + Delta-G solvation = -119.737926 kcal Electronic energy + Delta-G solvation = -27572.547052 eV Core-core repulsion = 23956.726811 eV Total energy + Delta-G solvation = -3615.820241 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.50236 -38.65862 -36.57983 -35.92986 -34.01695 -32.42407 -31.83266 -30.77624 -29.56355 -27.98702 -25.86357 -24.58081 -23.28599 -22.61640 -22.11985 -20.85016 -20.45127 -19.61734 -19.09631 -17.35520 -16.46139 -16.37179 -16.12703 -15.29202 -14.85917 -14.60437 -14.28931 -14.18070 -13.94801 -13.55588 -13.40042 -13.29050 -13.04903 -12.85598 -12.53454 -12.36222 -12.07935 -11.99892 -11.86375 -11.75699 -11.58020 -11.16263 -11.08526 -10.99628 -10.79729 -10.72726 -10.63697 -10.51633 -10.47581 -10.37676 -10.30051 -10.06788 -9.87901 -9.77726 -9.72930 -9.65278 -9.17987 -8.36646 -7.08555 -5.98081 -4.06569 2.46578 2.79869 3.26961 3.35652 3.37683 4.42789 4.71933 4.73979 4.83324 4.91386 4.95103 5.14520 5.18442 5.31768 5.32521 5.40061 5.43148 5.55026 5.57378 5.61793 5.65288 5.65745 5.74454 5.78604 5.84416 5.88627 5.94410 6.06963 6.14613 6.17053 6.21185 6.27693 6.28113 6.35668 6.46388 6.50959 6.54397 6.56532 6.59780 6.64155 6.95861 6.97977 7.01941 7.06451 7.36946 7.62054 7.97018 8.00134 8.14864 8.35260 8.40301 9.04190 9.59433 11.06533 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.011096 B = 0.004303 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2522.800432 B = 6506.005244 C = 8161.102794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.111 4.111 4 C 0.058 3.942 5 N -0.538 5.538 6 C 0.181 3.819 7 C -0.543 4.543 8 H 0.056 0.944 9 C 0.066 3.934 10 N -0.888 5.888 11 Si 0.882 3.118 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.284 1.284 15 C 0.099 3.901 16 H 0.047 0.953 17 C -0.119 4.119 18 C -0.114 4.114 19 C -0.106 4.106 20 C -0.076 4.076 21 H 0.106 0.894 22 C 0.465 3.535 23 O -0.499 6.499 24 O -0.362 6.362 25 C 0.059 3.941 26 C -0.151 4.151 27 C -0.092 4.092 28 H 0.046 0.954 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.041 0.959 36 H 0.053 0.947 37 H 0.030 0.970 38 H 0.039 0.961 39 H 0.261 0.739 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.068 0.932 47 H 0.067 0.933 48 H 0.065 0.935 49 H 0.066 0.934 50 H 0.076 0.924 51 H 0.068 0.932 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.431 -1.532 12.484 15.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.149 4.149 4 C -0.071 4.071 5 N -0.261 5.261 6 C 0.056 3.944 7 C -0.582 4.582 8 H 0.074 0.926 9 C -0.136 4.136 10 N -0.527 5.527 11 Si 0.710 3.290 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.211 1.211 15 C -0.010 4.010 16 H 0.065 0.935 17 C -0.157 4.157 18 C -0.152 4.152 19 C -0.144 4.144 20 C -0.095 4.095 21 H 0.124 0.876 22 C 0.308 3.692 23 O -0.386 6.386 24 O -0.279 6.279 25 C -0.015 4.015 26 C -0.208 4.208 27 C -0.130 4.130 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.048 0.952 38 H 0.057 0.943 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.086 0.914 48 H 0.084 0.916 49 H 0.085 0.915 50 H 0.095 0.905 51 H 0.086 0.914 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.898 -0.832 12.630 14.919 hybrid contribution 0.910 -0.634 -1.757 2.078 sum 8.808 -1.466 10.873 14.070 Atomic orbital electron populations 1.21751 0.96481 1.00707 1.01728 1.21479 0.95278 0.97929 1.01262 1.21530 0.95824 0.95171 1.02364 1.21990 0.94629 0.90916 0.99529 1.62516 1.12865 1.15646 1.35097 1.19856 0.96701 0.95089 0.82795 1.21731 1.31435 1.11442 0.93626 0.92635 1.24927 0.95312 0.94828 0.98579 1.69954 1.40860 1.21931 1.19968 0.86695 0.79833 0.79860 0.82581 1.19900 1.21011 1.21066 1.21264 0.90496 0.94767 0.94475 0.93535 1.21751 0.94839 1.00938 0.98144 1.21505 0.96923 0.95436 1.01344 1.21509 1.01400 0.96867 0.94633 1.21167 0.99685 0.88287 1.00372 0.87571 1.23981 0.79699 0.93005 0.72565 1.90684 1.54870 1.49470 1.43536 1.86508 1.29561 1.29878 1.82001 1.22970 0.96432 0.79706 1.02397 1.21788 0.93572 1.02460 1.02960 1.21481 0.89855 0.97412 1.04258 0.93502 0.93075 0.92723 0.92291 0.92845 0.92491 0.91240 0.94069 0.92894 0.95217 0.94313 0.92965 0.92022 0.91611 0.91832 0.91858 0.91226 0.91595 0.91312 0.91447 0.91611 0.91530 0.90483 0.91356 0.89232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 37.16 0.37 -1.56 16 2 C -0.12 -1.77 5.93 -26.73 -0.16 -1.93 16 3 C -0.11 -1.94 5.22 -26.73 -0.14 -2.08 16 4 C 0.06 1.08 4.64 -3.83 -0.02 1.06 16 5 N -0.54 -11.14 4.56 -228.09 -1.04 -12.18 16 6 C 0.18 4.56 4.50 -4.98 -0.02 4.53 16 7 C -0.54 -14.53 7.52 -34.44 -0.26 -14.79 16 8 H 0.06 1.48 5.88 -52.49 -0.31 1.17 16 9 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 10 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 11 Si 0.88 21.39 29.54 -169.99 -5.02 16.37 16 12 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 15 C 0.10 1.83 1.57 -67.71 -0.11 1.72 16 16 H 0.05 0.95 6.73 -51.93 -0.35 0.60 16 17 C -0.12 -1.74 5.01 -26.73 -0.13 -1.88 16 18 C -0.11 -1.38 5.92 -26.72 -0.16 -1.54 16 19 C -0.11 -1.33 5.14 -26.72 -0.14 -1.47 16 20 C -0.08 -1.17 2.63 -91.75 -0.24 -1.41 16 21 H 0.11 1.60 8.14 -51.93 -0.42 1.18 16 22 C 0.47 7.71 7.26 36.01 0.26 7.97 16 23 O -0.50 -9.93 15.73 -18.75 -0.30 -10.22 16 24 O -0.36 -5.13 10.12 -39.24 -0.40 -5.53 16 25 C 0.06 0.69 6.19 37.16 0.23 0.92 16 26 C -0.15 -1.24 10.29 37.16 0.38 -0.86 16 27 C -0.09 -1.74 3.42 -26.71 -0.09 -1.83 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 1.40 6.55 -51.93 -0.34 1.06 16 35 H 0.04 0.87 6.37 -51.93 -0.33 0.53 16 36 H 0.05 0.88 5.73 -51.92 -0.30 0.58 16 37 H 0.03 0.81 6.43 -51.93 -0.33 0.47 16 38 H 0.04 1.07 6.19 -51.93 -0.32 0.75 16 39 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.06 0.88 6.15 -51.93 -0.32 0.56 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.07 0.76 8.11 -51.93 -0.42 0.34 16 45 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.07 0.84 8.13 -51.93 -0.42 0.41 16 47 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 48 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 49 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 50 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.07 1.32 8.10 -51.93 -0.42 0.90 16 52 H 0.09 2.05 6.29 -51.93 -0.33 1.73 16 LS Contribution 396.24 15.07 5.97 5.97 Total: -1.00 -30.14 396.24 -10.03 -40.17 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -9.67 Total: 2.21 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: -0.32 Total: -11.38 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: -0.30 Total: -37.59 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -0.69 Total: -15.75 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.14 -10.03 -40.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255367026.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.564 kcal (2) G-P(sol) polarization free energy of solvation -30.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds