Wall clock time and date at job start Fri Apr 10 2020 22:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47317 * 2 1 4 4 C 1.52998 * 109.47317 * 179.97438 * 3 2 1 5 5 N 1.46896 * 109.47091 * 181.24637 * 4 3 2 6 6 C 1.46898 * 110.99998 * 295.30344 * 5 4 3 7 7 C 1.50701 * 109.46943 * 296.75410 * 6 5 4 8 8 H 1.07996 * 119.99957 * 354.94934 * 7 6 5 9 9 C 1.37884 * 119.99577 * 174.95301 * 7 6 5 10 10 N 1.31511 * 120.00166 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99566 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47535 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.47252 * 120.00003 * 11 9 7 14 14 H 1.48501 * 109.46940 * 239.99909 * 11 9 7 15 15 C 1.46906 * 110.99953 * 59.25508 * 5 4 3 16 16 C 1.53006 * 109.46908 * 60.00082 * 15 5 4 17 17 C 1.53000 * 109.46981 * 179.97438 * 16 15 5 18 18 C 1.52998 * 109.47220 * 299.99863 * 17 16 15 19 19 C 1.53004 * 109.47138 * 300.00163 * 18 17 16 20 20 C 1.50702 * 109.46899 * 185.00094 * 19 18 17 21 21 O 1.20825 * 120.00269 * 359.97438 * 20 19 18 22 22 O 1.34224 * 119.99880 * 180.02562 * 20 19 18 23 23 C 1.45201 * 117.00310 * 179.97438 * 22 20 19 24 24 C 1.53006 * 109.47032 * 60.00168 * 18 17 16 25 25 C 1.52998 * 109.47130 * 179.97438 * 15 5 4 26 26 H 1.09000 * 109.47442 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47626 * 300.00301 * 1 2 3 28 28 H 1.09006 * 109.47217 * 60.00223 * 1 2 3 29 29 H 1.09003 * 109.47000 * 239.99459 * 2 1 3 30 30 H 1.09003 * 109.46721 * 119.99824 * 2 1 3 31 31 H 1.08997 * 109.47018 * 59.99327 * 3 2 1 32 32 H 1.09006 * 109.46795 * 300.00035 * 3 2 1 33 33 H 1.08994 * 109.47247 * 61.24534 * 4 3 2 34 34 H 1.09001 * 109.46735 * 301.24955 * 4 3 2 35 35 H 1.08998 * 109.47091 * 56.76036 * 6 5 4 36 36 H 1.09002 * 109.46804 * 176.75593 * 6 5 4 37 37 H 0.97000 * 120.00049 * 179.97438 * 10 9 7 38 38 H 1.08999 * 109.47250 * 300.00074 * 15 5 4 39 39 H 1.08999 * 109.47171 * 59.99944 * 16 15 5 40 40 H 1.09003 * 109.47039 * 299.99965 * 16 15 5 41 41 H 1.08995 * 109.46972 * 179.97438 * 17 16 15 42 42 H 1.08999 * 109.47087 * 60.00048 * 17 16 15 43 43 H 1.08999 * 109.47172 * 179.97438 * 18 17 16 44 44 H 1.08994 * 109.46688 * 304.99680 * 19 18 17 45 45 H 1.08997 * 109.47188 * 65.00365 * 19 18 17 46 46 H 1.09007 * 109.46604 * 59.99660 * 23 22 20 47 47 H 1.09000 * 109.47364 * 179.97438 * 23 22 20 48 48 H 1.08998 * 109.46930 * 300.00448 * 23 22 20 49 49 H 1.08999 * 109.47171 * 59.99879 * 24 18 17 50 50 H 1.08996 * 109.47227 * 180.02562 * 24 18 17 51 51 H 1.08995 * 109.47237 * 60.00197 * 25 15 5 52 52 H 1.08999 * 109.47241 * 300.00234 * 25 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0596 2.8271 0.0308 6 6 3.6830 3.5454 -1.1940 7 6 4.3445 2.8948 -2.3815 8 1 5.0446 2.0859 -2.2335 9 6 4.0560 3.3324 -3.6568 10 7 3.2039 4.3179 -3.8368 11 14 4.8755 2.5255 -5.1288 12 1 5.7859 1.4499 -4.6605 13 1 3.8367 1.9438 -6.0164 14 1 5.6557 3.5417 -5.8796 15 6 3.5736 3.5315 1.2248 16 6 4.0678 2.8090 2.4797 17 6 3.5621 3.5430 3.7232 18 6 4.0921 4.9782 3.7191 19 6 5.6220 4.9570 3.7262 20 6 6.1433 6.3659 3.8461 21 8 5.3706 7.2919 3.9179 22 8 7.4661 6.5920 3.8720 23 6 7.8966 7.9738 3.9885 24 6 3.5979 5.7008 2.4642 25 6 4.1036 4.9668 1.2213 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9480 -0.9000 34 1 3.9329 0.9095 0.8795 35 1 2.6005 3.5111 -1.3170 36 1 4.0076 4.5834 -1.1207 37 1 3.0013 4.6260 -4.7340 38 1 2.4837 3.5463 1.2195 39 1 5.1577 2.7942 2.4850 40 1 3.6906 1.7863 2.4824 41 1 3.9138 3.0280 4.6172 42 1 2.4723 3.5581 3.7182 43 1 3.7315 5.5012 4.6048 44 1 5.9731 4.3665 4.5724 45 1 5.9835 4.5135 2.7985 46 1 7.5086 8.3983 4.9145 47 1 8.9857 8.0156 3.9983 48 1 7.5183 8.5449 3.1406 49 1 2.5080 5.7159 2.4591 50 1 3.9758 6.7231 2.4610 51 1 3.7519 5.4818 0.3273 52 1 5.1935 4.9517 1.2268 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256985892.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:41:11 Heat of formation + Delta-G solvation = -111.875023 kcal Electronic energy + Delta-G solvation = -27762.996715 eV Core-core repulsion = 24147.517435 eV Total energy + Delta-G solvation = -3615.479280 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.73269 -39.18286 -36.99486 -36.08858 -33.90067 -32.56238 -30.85044 -30.66031 -28.62119 -28.06368 -26.89922 -25.56806 -23.63261 -22.19827 -21.69971 -21.27103 -21.04848 -19.18822 -18.22514 -17.62811 -16.68808 -16.44885 -16.27241 -15.60672 -14.96321 -14.63481 -14.56889 -14.26854 -13.95932 -13.63867 -13.42988 -13.20591 -13.15670 -12.81223 -12.50012 -12.26391 -12.12864 -12.06064 -11.92923 -11.83968 -11.54112 -11.24913 -11.06782 -10.90916 -10.88630 -10.77161 -10.67914 -10.63842 -10.53360 -10.51854 -10.36928 -10.10959 -9.98299 -9.74844 -9.65240 -9.26502 -9.04481 -8.37234 -7.05085 -5.98765 -3.98780 2.21892 2.70786 3.32139 3.39992 3.44417 4.44859 4.62135 4.74207 4.84592 4.98411 5.04446 5.08629 5.16115 5.30161 5.34192 5.35666 5.37260 5.39713 5.49180 5.51933 5.55265 5.66823 5.74484 5.82857 5.88328 5.89575 5.90885 6.08152 6.11877 6.16586 6.19046 6.23282 6.27430 6.31633 6.39735 6.46104 6.48906 6.52544 6.59256 6.67590 6.75587 6.85169 6.91566 7.04062 7.43954 7.51823 7.75338 7.86863 8.18584 8.29768 8.65200 9.09915 9.64985 11.11957 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.011089 B = 0.004142 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.379401 B = 6759.057756 C = 8590.907224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.156 4.156 4 C 0.065 3.935 5 N -0.532 5.532 6 C 0.186 3.814 7 C -0.502 4.502 8 H 0.062 0.938 9 C 0.055 3.945 10 N -0.899 5.899 11 Si 0.892 3.108 12 H -0.272 1.272 13 H -0.286 1.286 14 H -0.285 1.285 15 C 0.084 3.916 16 C -0.115 4.115 17 C -0.111 4.111 18 C -0.071 4.071 19 C -0.116 4.116 20 C 0.462 3.538 21 O -0.506 6.506 22 O -0.363 6.363 23 C 0.035 3.965 24 C -0.120 4.120 25 C -0.117 4.117 26 H 0.046 0.954 27 H 0.048 0.952 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.052 0.948 35 H -0.002 1.002 36 H 0.031 0.969 37 H 0.259 0.741 38 H 0.033 0.967 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.101 0.899 45 H 0.119 0.881 46 H 0.060 0.940 47 H 0.099 0.901 48 H 0.063 0.937 49 H 0.060 0.940 50 H 0.075 0.925 51 H 0.072 0.928 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.638 -0.576 17.005 17.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.195 4.195 4 C -0.063 4.063 5 N -0.255 5.255 6 C 0.061 3.939 7 C -0.541 4.541 8 H 0.080 0.920 9 C -0.145 4.145 10 N -0.539 5.539 11 Si 0.721 3.279 12 H -0.197 1.197 13 H -0.212 1.212 14 H -0.211 1.211 15 C -0.024 4.024 16 C -0.153 4.153 17 C -0.149 4.149 18 C -0.090 4.090 19 C -0.153 4.153 20 C 0.305 3.695 21 O -0.393 6.393 22 O -0.279 6.279 23 C -0.059 4.059 24 C -0.158 4.158 25 C -0.154 4.154 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.070 0.930 35 H 0.016 0.984 36 H 0.049 0.951 37 H 0.069 0.931 38 H 0.051 0.949 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.091 0.909 44 H 0.120 0.880 45 H 0.137 0.863 46 H 0.078 0.922 47 H 0.117 0.883 48 H 0.082 0.918 49 H 0.079 0.921 50 H 0.093 0.907 51 H 0.090 0.910 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.881 -0.161 16.896 17.141 hybrid contribution -0.542 -0.047 -1.023 1.159 sum 2.339 -0.208 15.873 16.046 Atomic orbital electron populations 1.21770 0.96697 1.00699 1.01595 1.21427 0.95129 0.97688 1.01311 1.22237 0.99112 0.96081 1.02059 1.22053 0.91395 0.91563 1.01305 1.62375 1.58635 1.01720 1.02780 1.19820 0.94674 0.94188 0.85208 1.21211 1.24694 1.18010 0.90181 0.91983 1.24959 0.95377 0.95275 0.98938 1.69966 1.34693 1.27391 1.21818 0.86529 0.79272 0.79367 0.82781 1.19698 1.21229 1.21136 1.21527 0.96557 0.93378 0.90977 1.21675 1.01384 0.98762 0.93465 1.21561 1.00789 0.94362 0.98162 1.20962 0.91633 0.96788 0.99613 1.21693 0.97417 0.89947 1.06249 1.23992 0.80279 0.93187 0.72007 1.90627 1.57364 1.46126 1.45196 1.86526 1.26167 1.31368 1.83870 1.23229 1.00607 0.79770 1.02249 1.21707 1.00711 0.99826 0.93578 1.21707 1.00962 0.95163 0.97596 0.93460 0.93294 0.92763 0.92104 0.92867 0.92998 0.90914 0.90184 0.92955 0.98435 0.95068 0.93128 0.94899 0.91308 0.92008 0.92105 0.91694 0.90854 0.88046 0.86317 0.92157 0.88303 0.91824 0.92145 0.90670 0.90979 0.91775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.91 37.16 0.37 -1.62 16 2 C -0.12 -1.72 5.93 -26.73 -0.16 -1.88 16 3 C -0.16 -2.72 4.53 -26.73 -0.12 -2.84 16 4 C 0.07 1.22 4.76 -3.83 -0.02 1.20 16 5 N -0.53 -10.87 4.59 -228.08 -1.05 -11.92 16 6 C 0.19 4.68 4.22 -4.98 -0.02 4.66 16 7 C -0.50 -13.80 8.31 -34.44 -0.29 -14.09 16 8 H 0.06 1.71 7.14 -52.49 -0.37 1.33 16 9 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 10 N -0.90 -26.55 13.29 55.43 0.74 -25.81 16 11 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 12 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 15 C 0.08 1.44 1.54 -67.71 -0.10 1.33 16 16 C -0.12 -1.55 4.69 -26.73 -0.13 -1.68 16 17 C -0.11 -1.24 5.45 -26.73 -0.15 -1.38 16 18 C -0.07 -0.85 2.31 -90.62 -0.21 -1.06 16 19 C -0.12 -1.30 4.58 -27.88 -0.13 -1.42 16 20 C 0.46 5.98 7.68 36.01 0.28 6.26 16 21 O -0.51 -7.67 13.72 -18.75 -0.26 -7.93 16 22 O -0.36 -4.36 10.56 -39.24 -0.41 -4.77 16 23 C 0.04 0.32 10.56 101.05 1.07 1.39 16 24 C -0.12 -1.74 5.19 -26.75 -0.14 -1.88 16 25 C -0.12 -1.98 4.59 -26.76 -0.12 -2.10 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.87 6.32 -51.93 -0.33 0.54 16 32 H 0.07 1.52 6.51 -51.93 -0.34 1.19 16 33 H 0.08 1.67 6.65 -51.93 -0.35 1.32 16 34 H 0.05 0.86 6.34 -51.93 -0.33 0.53 16 35 H 0.00 -0.06 6.30 -51.93 -0.33 -0.38 16 36 H 0.03 0.84 5.84 -51.93 -0.30 0.54 16 37 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 38 H 0.03 0.60 6.26 -51.93 -0.33 0.27 16 39 H 0.07 0.92 6.54 -51.93 -0.34 0.58 16 40 H 0.06 0.83 6.42 -51.93 -0.33 0.49 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.07 0.86 7.96 -51.93 -0.41 0.45 16 44 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.12 1.43 4.82 -51.93 -0.25 1.18 16 46 H 0.06 0.52 8.13 -51.93 -0.42 0.09 16 47 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 49 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 50 H 0.07 1.17 5.96 -51.93 -0.31 0.86 16 51 H 0.07 1.43 6.19 -51.93 -0.32 1.10 16 52 H 0.06 1.10 6.32 -51.93 -0.33 0.77 16 LS Contribution 384.30 15.07 5.79 5.79 Total: -1.00 -30.41 384.30 -9.35 -39.76 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -9.17 Total: 1.96 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: 0.03 Total: -13.67 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: -0.31 Total: -37.73 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: -0.67 Total: -12.71 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.41 -9.35 -39.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256985892.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.110 kcal (2) G-P(sol) polarization free energy of solvation -30.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds