Wall clock time and date at job start Fri Apr 10 2020 22:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47317 * 2 1 4 4 C 1.52998 * 109.47317 * 179.97438 * 3 2 1 5 5 N 1.46896 * 109.47091 * 181.24637 * 4 3 2 6 6 C 1.46898 * 110.99998 * 295.30344 * 5 4 3 7 7 C 1.50701 * 109.46943 * 296.75410 * 6 5 4 8 8 H 1.07996 * 119.99957 * 354.94934 * 7 6 5 9 9 C 1.37884 * 119.99577 * 174.95301 * 7 6 5 10 10 N 1.31511 * 120.00166 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99566 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47535 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.47252 * 120.00003 * 11 9 7 14 14 H 1.48501 * 109.46940 * 239.99909 * 11 9 7 15 15 C 1.46906 * 110.99953 * 59.25508 * 5 4 3 16 16 C 1.53006 * 109.46908 * 60.00082 * 15 5 4 17 17 C 1.53000 * 109.46981 * 179.97438 * 16 15 5 18 18 C 1.52998 * 109.47220 * 299.99863 * 17 16 15 19 19 C 1.53004 * 109.47138 * 300.00163 * 18 17 16 20 20 C 1.50702 * 109.46899 * 185.00094 * 19 18 17 21 21 O 1.20825 * 120.00269 * 359.97438 * 20 19 18 22 22 O 1.34224 * 119.99880 * 180.02562 * 20 19 18 23 23 C 1.45201 * 117.00310 * 179.97438 * 22 20 19 24 24 C 1.53006 * 109.47032 * 60.00168 * 18 17 16 25 25 C 1.52998 * 109.47130 * 179.97438 * 15 5 4 26 26 H 1.09000 * 109.47442 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47626 * 300.00301 * 1 2 3 28 28 H 1.09006 * 109.47217 * 60.00223 * 1 2 3 29 29 H 1.09003 * 109.47000 * 239.99459 * 2 1 3 30 30 H 1.09003 * 109.46721 * 119.99824 * 2 1 3 31 31 H 1.08997 * 109.47018 * 59.99327 * 3 2 1 32 32 H 1.09006 * 109.46795 * 300.00035 * 3 2 1 33 33 H 1.08994 * 109.47247 * 61.24534 * 4 3 2 34 34 H 1.09001 * 109.46735 * 301.24955 * 4 3 2 35 35 H 1.08998 * 109.47091 * 56.76036 * 6 5 4 36 36 H 1.09002 * 109.46804 * 176.75593 * 6 5 4 37 37 H 0.97000 * 120.00049 * 179.97438 * 10 9 7 38 38 H 1.08999 * 109.47250 * 300.00074 * 15 5 4 39 39 H 1.08999 * 109.47171 * 59.99944 * 16 15 5 40 40 H 1.09003 * 109.47039 * 299.99965 * 16 15 5 41 41 H 1.08995 * 109.46972 * 179.97438 * 17 16 15 42 42 H 1.08999 * 109.47087 * 60.00048 * 17 16 15 43 43 H 1.08999 * 109.47172 * 179.97438 * 18 17 16 44 44 H 1.08994 * 109.46688 * 304.99680 * 19 18 17 45 45 H 1.08997 * 109.47188 * 65.00365 * 19 18 17 46 46 H 1.09007 * 109.46604 * 59.99660 * 23 22 20 47 47 H 1.09000 * 109.47364 * 179.97438 * 23 22 20 48 48 H 1.08998 * 109.46930 * 300.00448 * 23 22 20 49 49 H 1.08999 * 109.47171 * 59.99879 * 24 18 17 50 50 H 1.08996 * 109.47227 * 180.02562 * 24 18 17 51 51 H 1.08995 * 109.47237 * 60.00197 * 25 15 5 52 52 H 1.08999 * 109.47241 * 300.00234 * 25 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0596 2.8271 0.0308 6 6 3.6830 3.5454 -1.1940 7 6 4.3445 2.8948 -2.3815 8 1 5.0446 2.0859 -2.2335 9 6 4.0560 3.3324 -3.6568 10 7 3.2039 4.3179 -3.8368 11 14 4.8755 2.5255 -5.1288 12 1 5.7859 1.4499 -4.6605 13 1 3.8367 1.9438 -6.0164 14 1 5.6557 3.5417 -5.8796 15 6 3.5736 3.5315 1.2248 16 6 4.0678 2.8090 2.4797 17 6 3.5621 3.5430 3.7232 18 6 4.0921 4.9782 3.7191 19 6 5.6220 4.9570 3.7262 20 6 6.1433 6.3659 3.8461 21 8 5.3706 7.2919 3.9179 22 8 7.4661 6.5920 3.8720 23 6 7.8966 7.9738 3.9885 24 6 3.5979 5.7008 2.4642 25 6 4.1036 4.9668 1.2213 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9480 -0.9000 34 1 3.9329 0.9095 0.8795 35 1 2.6005 3.5111 -1.3170 36 1 4.0076 4.5834 -1.1207 37 1 3.0013 4.6260 -4.7340 38 1 2.4837 3.5463 1.2195 39 1 5.1577 2.7942 2.4850 40 1 3.6906 1.7863 2.4824 41 1 3.9138 3.0280 4.6172 42 1 2.4723 3.5581 3.7182 43 1 3.7315 5.5012 4.6048 44 1 5.9731 4.3665 4.5724 45 1 5.9835 4.5135 2.7985 46 1 7.5086 8.3983 4.9145 47 1 8.9857 8.0156 3.9983 48 1 7.5183 8.5449 3.1406 49 1 2.5080 5.7159 2.4591 50 1 3.9758 6.7231 2.4610 51 1 3.7519 5.4818 0.3273 52 1 5.1935 4.9517 1.2268 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256985892.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:41:10 Heat of formation + Delta-G solvation = -128.915687 kcal Electronic energy + Delta-G solvation = -27763.735654 eV Core-core repulsion = 24147.517435 eV Total energy + Delta-G solvation = -3616.218219 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.75440 -40.45809 -38.24414 -37.20489 -35.35506 -34.49965 -32.09867 -31.86733 -29.71174 -29.67306 -28.03318 -27.02292 -25.24207 -23.62640 -23.02126 -22.35162 -22.32747 -20.59610 -19.41099 -18.63277 -18.39883 -17.63161 -17.39606 -17.02483 -16.61009 -16.08744 -16.01128 -15.51851 -15.13413 -15.01120 -14.57732 -14.44554 -14.24215 -14.15706 -13.92754 -13.61352 -13.43406 -13.40129 -13.08769 -12.94141 -12.91063 -12.79293 -12.58490 -12.42602 -12.23685 -12.09210 -12.05859 -11.92133 -11.83570 -11.73494 -11.69832 -11.49014 -11.30966 -11.20057 -11.04881 -10.93852 -10.64361 -10.49559 -8.77464 -8.16951 -6.25245 1.23638 1.38728 1.39637 1.52719 1.85772 2.40889 3.15936 3.34705 3.69191 3.80392 3.96324 4.00402 4.08877 4.12887 4.23954 4.30359 4.32938 4.35185 4.36445 4.45476 4.52857 4.56437 4.62051 4.67558 4.70849 4.72963 4.81301 4.86924 4.88181 4.92941 4.96842 5.06445 5.12402 5.14432 5.21308 5.26131 5.30937 5.32301 5.33859 5.36198 5.45853 5.49531 5.53214 5.54928 5.58549 5.65940 5.74890 6.15037 6.47562 6.78941 6.81155 6.94297 7.43970 8.93934 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.011089 B = 0.004142 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.379401 B = 6759.057756 C = 8590.907224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.113 4.113 3 C -0.145 4.145 4 C 0.067 3.933 5 N -0.537 5.537 6 C 0.205 3.795 7 C -0.513 4.513 8 H 0.061 0.939 9 C 0.001 3.999 10 N -0.937 5.937 11 Si 0.962 3.038 12 H -0.261 1.261 13 H -0.281 1.281 14 H -0.281 1.281 15 C 0.085 3.915 16 C -0.107 4.107 17 C -0.102 4.102 18 C -0.065 4.065 19 C -0.113 4.113 20 C 0.459 3.541 21 O -0.535 6.535 22 O -0.369 6.369 23 C 0.028 3.972 24 C -0.113 4.113 25 C -0.110 4.110 26 H 0.069 0.931 27 H 0.057 0.943 28 H 0.035 0.965 29 H 0.051 0.949 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.025 0.975 33 H 0.054 0.946 34 H 0.088 0.912 35 H -0.035 1.035 36 H 0.003 0.997 37 H 0.261 0.739 38 H 0.020 0.980 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.097 0.903 42 H 0.066 0.934 43 H 0.083 0.917 44 H 0.138 0.862 45 H 0.111 0.889 46 H 0.065 0.935 47 H 0.129 0.871 48 H 0.052 0.948 49 H 0.057 0.943 50 H 0.060 0.940 51 H 0.028 0.972 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.681 -2.836 19.417 19.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.151 4.151 3 C -0.184 4.184 4 C -0.061 4.061 5 N -0.260 5.260 6 C 0.079 3.921 7 C -0.552 4.552 8 H 0.079 0.921 9 C -0.196 4.196 10 N -0.578 5.578 11 Si 0.787 3.213 12 H -0.185 1.185 13 H -0.207 1.207 14 H -0.207 1.207 15 C -0.023 4.023 16 C -0.145 4.145 17 C -0.139 4.139 18 C -0.084 4.084 19 C -0.150 4.150 20 C 0.304 3.696 21 O -0.425 6.425 22 O -0.285 6.285 23 C -0.065 4.065 24 C -0.151 4.151 25 C -0.147 4.147 26 H 0.088 0.912 27 H 0.076 0.924 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.099 0.901 31 H 0.079 0.921 32 H 0.043 0.957 33 H 0.072 0.928 34 H 0.106 0.894 35 H -0.017 1.017 36 H 0.021 0.979 37 H 0.070 0.930 38 H 0.038 0.962 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.116 0.884 42 H 0.084 0.916 43 H 0.102 0.898 44 H 0.156 0.844 45 H 0.129 0.871 46 H 0.084 0.916 47 H 0.147 0.853 48 H 0.071 0.929 49 H 0.076 0.924 50 H 0.078 0.922 51 H 0.046 0.954 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.940 -2.438 19.327 19.875 hybrid contribution -0.847 0.733 -1.758 2.085 sum 3.093 -1.705 17.569 17.921 Atomic orbital electron populations 1.21751 0.95583 1.02055 1.01177 1.21407 0.96130 0.95373 1.02195 1.22090 0.98255 0.97916 1.00121 1.22080 0.92132 0.90313 1.01601 1.62305 1.59030 1.02560 1.02084 1.19389 0.92259 0.93173 0.87268 1.21519 1.24529 1.17840 0.91272 0.92079 1.25848 0.95939 0.95779 1.02067 1.70106 1.36214 1.28938 1.22538 0.85446 0.78382 0.78577 0.78921 1.18530 1.20674 1.20696 1.21641 0.95833 0.93475 0.91383 1.21639 1.01812 0.98928 0.92110 1.21536 1.00897 0.93372 0.98144 1.20922 0.92304 0.97197 0.97951 1.21744 0.96656 0.89274 1.07307 1.24394 0.80406 0.93644 0.71157 1.90619 1.58030 1.47148 1.46700 1.86515 1.25629 1.32856 1.83515 1.23487 1.02465 0.78470 1.02092 1.21608 1.00418 0.99103 0.93951 1.21597 1.00611 0.95380 0.97148 0.91177 0.92351 0.94626 0.92990 0.90102 0.92103 0.95652 0.92786 0.89397 1.01701 0.97905 0.93032 0.96214 0.90619 0.90976 0.88444 0.91551 0.89822 0.84398 0.87136 0.91583 0.85295 0.92865 0.92436 0.92172 0.95368 0.92094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 9.91 71.98 0.71 -3.00 16 2 C -0.11 -3.15 5.93 30.59 0.18 -2.96 16 3 C -0.14 -5.10 4.53 30.59 0.14 -4.96 16 4 C 0.07 2.47 4.76 86.30 0.41 2.88 16 5 N -0.54 -22.53 4.59 -875.53 -4.02 -26.55 16 6 C 0.21 11.01 4.22 85.56 0.36 11.37 16 7 C -0.51 -29.33 8.31 25.60 0.21 -29.12 16 8 H 0.06 3.43 7.14 -2.91 -0.02 3.41 16 9 C 0.00 0.06 5.46 84.66 0.46 0.52 16 10 N -0.94 -57.79 13.29 21.45 0.28 -57.50 16 11 Si 0.96 45.19 29.54 68.60 2.03 47.21 16 12 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 13 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 14 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 15 C 0.09 2.92 1.54 44.92 0.07 2.99 16 16 C -0.11 -2.59 4.69 30.60 0.14 -2.45 16 17 C -0.10 -1.89 5.45 30.59 0.17 -1.72 16 18 C -0.07 -1.41 2.31 -10.79 -0.02 -1.43 16 19 C -0.11 -2.25 4.58 29.85 0.14 -2.11 16 20 C 0.46 11.38 7.68 71.24 0.55 11.93 16 21 O -0.54 -16.12 13.72 21.97 0.30 -15.82 16 22 O -0.37 -8.38 10.56 -51.36 -0.54 -8.92 16 23 C 0.03 0.49 10.56 113.37 1.20 1.68 16 24 C -0.11 -3.31 5.19 30.58 0.16 -3.15 16 25 C -0.11 -3.91 4.59 30.58 0.14 -3.77 16 26 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 29 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.06 2.01 6.32 -2.39 -0.02 2.00 16 32 H 0.02 1.12 6.51 -2.38 -0.02 1.10 16 33 H 0.05 2.28 6.65 -2.39 -0.02 2.26 16 34 H 0.09 2.65 6.34 -2.39 -0.02 2.63 16 35 H -0.03 -2.05 6.30 -2.39 -0.02 -2.07 16 36 H 0.00 0.18 5.84 -2.39 -0.01 0.16 16 37 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 38 H 0.02 0.74 6.26 -2.39 -0.01 0.72 16 39 H 0.08 1.78 6.54 -2.39 -0.02 1.76 16 40 H 0.07 1.63 6.42 -2.39 -0.02 1.62 16 41 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.08 1.72 7.96 -2.39 -0.02 1.70 16 44 H 0.14 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.11 2.45 4.82 -2.39 -0.01 2.44 16 46 H 0.07 1.06 8.13 -2.38 -0.02 1.04 16 47 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.05 1.02 8.13 -2.39 -0.02 1.00 16 49 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 50 H 0.06 1.96 5.96 -2.39 -0.01 1.94 16 51 H 0.03 1.22 6.19 -2.39 -0.01 1.20 16 52 H 0.06 2.17 6.32 -2.39 -0.02 2.16 16 Total: -1.00 -70.48 384.30 3.95 -66.53 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: 0.89 Total: 18.37 kcal Atomic # 6 Polarization: -28.33 SS G_CDS: 5.01 Total: -23.32 kcal Atomic # 7 Polarization: -80.32 SS G_CDS: -3.74 Total: -84.05 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.24 Total: -24.74 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Total: -70.48 3.95 -66.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256985892.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.383 kcal (2) G-P(sol) polarization free energy of solvation -70.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds