Wall clock time and date at job start Fri Apr 10 2020 22:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46867 * 2 1 4 4 C 1.52998 * 109.46867 * 180.02562 * 3 2 1 5 5 O 1.45200 * 109.47121 * 180.02562 * 4 3 2 6 6 C 1.34231 * 116.99955 * 180.02562 * 5 4 3 7 7 O 1.20825 * 120.00085 * 359.97438 * 6 5 4 8 8 C 1.50705 * 119.99837 * 179.72661 * 6 5 4 9 9 C 1.52996 * 109.46813 * 180.27134 * 8 6 5 10 10 C 1.53004 * 109.46792 * 179.97438 * 9 8 6 11 11 H 1.09000 * 109.47056 * 55.00310 * 10 9 8 12 12 C 1.53007 * 109.47145 * 175.00029 * 10 9 8 13 13 N 1.46901 * 109.47190 * 294.99780 * 10 9 8 14 14 C 1.46897 * 110.99794 * 150.73527 * 13 10 9 15 15 H 1.09002 * 109.41675 * 38.95834 * 14 13 10 16 16 C 1.52953 * 109.41334 * 158.75327 * 14 13 10 17 17 C 1.53228 * 109.40763 * 183.70473 * 16 14 13 18 18 C 1.51271 * 108.53689 * 305.37124 * 17 16 14 19 19 C 1.37878 * 120.85190 * 231.37038 * 18 17 16 20 20 N 1.31512 * 120.00085 * 355.33463 * 19 18 17 21 21 Si 1.86800 * 119.99872 * 175.33493 * 19 18 17 22 22 H 1.48497 * 109.47544 * 5.62769 * 21 19 18 23 23 H 1.48508 * 109.46904 * 125.62857 * 21 19 18 24 24 H 1.48497 * 109.47264 * 245.62279 * 21 19 18 25 25 C 1.51273 * 118.30086 * 51.34206 * 18 17 16 26 26 C 1.52968 * 109.41375 * 279.10354 * 14 13 10 27 27 H 1.09005 * 109.47419 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47126 * 299.99417 * 1 2 3 29 29 H 1.08999 * 109.47533 * 59.99367 * 1 2 3 30 30 H 1.08993 * 109.46597 * 240.00424 * 2 1 3 31 31 H 1.08993 * 109.47315 * 120.00248 * 2 1 3 32 32 H 1.09007 * 109.47231 * 60.00639 * 3 2 1 33 33 H 1.08993 * 109.47356 * 300.00223 * 3 2 1 34 34 H 1.09007 * 109.47126 * 60.00583 * 4 3 2 35 35 H 1.08999 * 109.47533 * 300.00633 * 4 3 2 36 36 H 1.08996 * 109.46764 * 300.27118 * 8 6 5 37 37 H 1.08993 * 109.47000 * 60.27085 * 8 6 5 38 38 H 1.08996 * 109.47442 * 299.99569 * 9 8 6 39 39 H 1.08998 * 109.47625 * 59.99801 * 9 8 6 40 40 H 1.08998 * 109.47323 * 184.99119 * 12 10 9 41 41 H 1.09007 * 109.46926 * 304.98846 * 12 10 9 42 42 H 1.08996 * 109.46878 * 64.98629 * 12 10 9 43 43 H 1.00901 * 110.99521 * 26.78047 * 13 10 9 44 44 H 1.08999 * 109.48304 * 303.68236 * 16 14 13 45 45 H 1.08996 * 109.48772 * 63.72559 * 16 14 13 46 46 H 1.08998 * 109.63378 * 185.65640 * 17 16 14 47 47 H 1.09007 * 109.78525 * 65.17623 * 17 16 14 48 48 H 0.97000 * 120.00020 * 180.02562 * 20 19 18 49 49 H 1.08996 * 109.62927 * 188.94070 * 25 18 17 50 50 H 1.09007 * 109.62309 * 68.36661 * 25 18 17 51 51 H 1.08996 * 109.47662 * 296.27718 * 26 14 13 52 52 H 1.09002 * 109.47852 * 56.30534 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 8 4.0539 2.8115 0.0000 6 6 5.3846 2.9874 -0.0010 7 8 6.1207 2.0292 -0.0019 8 6 5.9606 4.3800 -0.0067 9 6 7.4885 4.2999 -0.0135 10 6 8.0732 5.7137 -0.0200 11 1 7.6713 6.2769 0.8223 12 6 9.5967 5.6361 0.0989 13 7 7.7138 6.3866 -1.2753 14 6 7.6133 7.8396 -1.0837 15 1 8.4036 8.1718 -0.4106 16 6 7.7682 8.5423 -2.4334 17 6 7.7560 10.0598 -2.2217 18 6 6.4984 10.4301 -1.4669 19 6 5.6614 11.4225 -1.9312 20 7 5.9976 12.1232 -2.9921 21 14 4.0501 11.7718 -1.0532 22 1 3.9693 10.9481 0.1797 23 1 3.9849 13.2109 -0.6922 24 1 2.9149 11.4345 -1.9492 25 6 6.1822 9.6831 -0.1901 26 6 6.2514 8.1792 -0.4755 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8932 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6766 1.9564 0.8901 33 1 1.6766 1.9564 -0.8899 34 1 3.9329 0.9289 -0.8910 35 1 3.9337 0.9285 0.8890 36 1 5.6206 4.9101 -0.8963 37 1 5.6288 4.9140 0.8836 38 1 7.8285 3.7697 0.8760 39 1 7.8204 3.7658 -0.9038 40 1 10.0063 6.6426 0.1836 41 1 9.8631 5.0597 0.9850 42 1 10.0060 5.1505 -0.7869 43 1 6.8570 6.0117 -1.6540 44 1 8.7123 8.2467 -2.8910 45 1 6.9430 8.2599 -3.0871 46 1 7.7651 10.5645 -3.1878 47 1 8.6309 10.3589 -1.6443 48 1 5.4089 12.8217 -3.3185 49 1 5.1801 9.9456 0.1491 50 1 6.9115 9.9441 0.5769 51 1 5.4622 7.9053 -1.1756 52 1 6.1206 7.6261 0.4546 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257379441.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:41:15 Heat of formation + Delta-G solvation = -131.012344 kcal Electronic energy + Delta-G solvation = -26308.681948 eV Core-core repulsion = 22692.372811 eV Total energy + Delta-G solvation = -3616.309137 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.67946 -38.35537 -37.13225 -35.66558 -35.32526 -32.75834 -31.33332 -29.99765 -29.62165 -29.37145 -26.30501 -25.35067 -23.65253 -21.92930 -21.60295 -21.24780 -20.87363 -19.99555 -19.34231 -17.75790 -17.10824 -16.55625 -16.15797 -15.90593 -15.33351 -14.76551 -14.39658 -14.16764 -14.13679 -13.92634 -13.50455 -13.21649 -12.98589 -12.83254 -12.60327 -12.34566 -12.19903 -12.15537 -12.07679 -11.93604 -11.73246 -11.51298 -11.44280 -11.37204 -11.20244 -11.11910 -10.95522 -10.85180 -10.74971 -10.67522 -10.53258 -10.26787 -10.06152 -9.78661 -9.35110 -8.86376 -8.70807 -8.42210 -7.77229 -6.06902 -3.97110 2.05470 2.44125 3.25842 3.34223 3.36178 4.28204 4.39387 4.43988 4.53206 4.54069 4.64205 4.77894 4.81797 4.89723 4.99766 5.07436 5.16923 5.20936 5.34770 5.34867 5.37646 5.48387 5.52204 5.64163 5.67814 5.76230 5.76868 5.83769 5.85661 5.96423 6.00656 6.03615 6.18377 6.24722 6.30365 6.43984 6.52590 6.75083 6.84871 6.91107 6.96798 7.12965 7.24358 7.42770 7.58939 7.61900 7.69511 7.76348 7.90372 7.94861 8.44307 9.01625 9.57833 11.02451 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.011694 B = 0.002911 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.720910 B = 9617.615310 C =11536.282904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.122 4.122 4 C 0.066 3.934 5 O -0.359 6.359 6 C 0.465 3.535 7 O -0.510 6.510 8 C -0.120 4.120 9 C -0.109 4.109 10 C 0.082 3.918 11 H 0.048 0.952 12 C -0.136 4.136 13 N -0.687 5.687 14 C 0.099 3.901 15 H 0.066 0.934 16 C -0.094 4.094 17 C 0.009 3.991 18 C -0.483 4.483 19 C 0.074 3.926 20 N -0.890 5.890 21 Si 0.877 3.123 22 H -0.255 1.255 23 H -0.286 1.286 24 H -0.284 1.284 25 C -0.024 4.024 26 C -0.134 4.134 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.055 0.945 41 H 0.050 0.950 42 H 0.060 0.940 43 H 0.332 0.668 44 H 0.036 0.964 45 H 0.045 0.955 46 H 0.055 0.945 47 H 0.002 0.998 48 H 0.262 0.738 49 H 0.040 0.960 50 H 0.014 0.986 51 H 0.050 0.950 52 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.349 -21.009 7.021 22.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.159 4.159 4 C -0.008 4.008 5 O -0.276 6.276 6 C 0.308 3.692 7 O -0.398 6.398 8 C -0.157 4.157 9 C -0.147 4.147 10 C -0.028 4.028 11 H 0.066 0.934 12 C -0.194 4.194 13 N -0.318 5.318 14 C -0.010 4.010 15 H 0.084 0.916 16 C -0.132 4.132 17 C -0.029 4.029 18 C -0.502 4.502 19 C -0.128 4.128 20 N -0.528 5.528 21 Si 0.706 3.294 22 H -0.180 1.180 23 H -0.213 1.213 24 H -0.210 1.210 25 C -0.062 4.062 26 C -0.174 4.174 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.151 0.849 44 H 0.055 0.945 45 H 0.064 0.936 46 H 0.074 0.926 47 H 0.020 0.980 48 H 0.072 0.928 49 H 0.058 0.942 50 H 0.032 0.968 51 H 0.069 0.931 52 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -4.554 -21.166 6.659 22.651 hybrid contribution -1.810 0.193 0.860 2.013 sum -6.364 -20.973 7.519 23.172 Atomic orbital electron populations 1.21753 0.95072 1.01891 1.02219 1.21434 0.96494 0.95538 1.02489 1.21629 0.92389 0.97887 1.04008 1.23087 0.94938 0.80264 1.02541 1.86522 1.24828 1.32221 1.83993 1.23862 0.80350 0.92990 0.71953 1.90658 1.60386 1.43308 1.45445 1.21557 0.97365 0.90631 1.06178 1.21671 0.91169 0.97754 1.04148 1.21505 0.96173 0.92606 0.92560 0.93391 1.21757 0.94819 1.01792 1.01070 1.60904 1.39508 1.05280 1.26155 1.21535 0.96375 0.84666 0.98384 0.91586 1.21569 0.98854 0.98401 0.94375 1.19384 0.94788 0.90207 0.98535 1.20062 1.07051 1.16939 1.06193 1.24858 0.97770 0.95345 0.94869 1.69866 1.37163 1.21900 1.23872 0.86795 0.84219 0.77844 0.80551 1.18023 1.21263 1.21020 1.19948 0.97780 0.91490 0.97017 1.22249 0.97449 0.99945 0.97744 0.92462 0.92500 0.92430 0.91606 0.91670 0.90677 0.90574 0.91226 0.91334 0.87398 0.87592 0.90664 0.90188 0.92542 0.93145 0.92086 0.84883 0.94523 0.93592 0.92649 0.97956 0.92759 0.94168 0.96782 0.93114 0.95457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.91 37.16 0.37 -0.45 16 2 C -0.12 -0.72 5.93 -26.73 -0.16 -0.87 16 3 C -0.12 -0.88 5.59 -26.73 -0.15 -1.03 16 4 C 0.07 0.61 5.47 37.16 0.20 0.81 16 5 O -0.36 -4.13 10.22 -39.26 -0.40 -4.53 16 6 C 0.47 5.68 7.96 36.01 0.29 5.96 16 7 O -0.51 -7.36 15.73 -18.75 -0.29 -7.66 16 8 C -0.12 -1.30 5.65 -27.88 -0.16 -1.45 16 9 C -0.11 -1.25 4.06 -26.73 -0.11 -1.36 16 10 C 0.08 1.06 2.41 -67.71 -0.16 0.90 16 11 H 0.05 0.65 6.81 -51.93 -0.35 0.30 16 12 C -0.14 -1.71 9.44 37.16 0.35 -1.36 16 13 N -0.69 -10.49 6.05 -99.78 -0.60 -11.09 16 14 C 0.10 1.83 2.20 -67.75 -0.15 1.68 16 15 H 0.07 1.28 7.50 -51.93 -0.39 0.89 16 16 C -0.09 -1.98 5.54 -26.64 -0.15 -2.13 16 17 C 0.01 0.22 5.95 -27.49 -0.16 0.05 16 18 C -0.48 -12.59 5.51 -98.92 -0.54 -13.14 16 19 C 0.07 2.01 5.46 -17.82 -0.10 1.91 16 20 N -0.89 -25.68 12.75 55.43 0.71 -24.97 16 21 Si 0.88 20.64 28.02 -169.99 -4.76 15.87 16 22 H -0.26 -5.69 5.43 56.52 0.31 -5.38 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 25 C -0.02 -0.56 5.62 -27.48 -0.15 -0.71 16 26 C -0.13 -2.58 5.19 -26.63 -0.14 -2.72 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.64 8.13 -51.93 -0.42 0.22 16 35 H 0.07 0.62 8.13 -51.93 -0.42 0.19 16 36 H 0.11 1.15 6.45 -51.93 -0.34 0.81 16 37 H 0.11 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.07 0.84 8.10 -51.93 -0.42 0.41 16 39 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 40 H 0.06 0.76 7.76 -51.93 -0.40 0.36 16 41 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.33 4.80 6.27 -39.29 -0.25 4.56 16 44 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.05 1.52 7.11 -51.93 -0.37 1.15 16 47 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 48 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 49 H 0.04 0.92 4.27 -51.93 -0.22 0.70 16 50 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 51 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 52 H 0.03 0.46 7.13 -51.93 -0.37 0.09 16 LS Contribution 400.52 15.07 6.04 6.04 Total: -1.00 -29.20 400.52 -10.19 -39.39 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -9.95 Total: 0.85 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: -0.92 Total: -13.91 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: 0.10 Total: -36.06 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: -0.70 Total: -12.18 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.76 Total: 15.87 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -29.20 -10.19 -39.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257379441.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.625 kcal (2) G-P(sol) polarization free energy of solvation -29.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds