Wall clock time and date at job start Fri Apr 10 2020 22:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46867 * 2 1 4 4 C 1.52998 * 109.46867 * 180.02562 * 3 2 1 5 5 O 1.45200 * 109.47121 * 180.02562 * 4 3 2 6 6 C 1.34231 * 116.99955 * 180.02562 * 5 4 3 7 7 O 1.20825 * 120.00085 * 359.97438 * 6 5 4 8 8 C 1.50705 * 119.99837 * 179.72661 * 6 5 4 9 9 C 1.52996 * 109.46813 * 180.27134 * 8 6 5 10 10 C 1.53004 * 109.46792 * 179.97438 * 9 8 6 11 11 H 1.09000 * 109.47056 * 55.00310 * 10 9 8 12 12 C 1.53007 * 109.47145 * 175.00029 * 10 9 8 13 13 N 1.46901 * 109.47190 * 294.99780 * 10 9 8 14 14 C 1.46897 * 110.99794 * 150.73527 * 13 10 9 15 15 H 1.09002 * 109.41675 * 38.95834 * 14 13 10 16 16 C 1.52953 * 109.41334 * 158.75327 * 14 13 10 17 17 C 1.53228 * 109.40763 * 183.70473 * 16 14 13 18 18 C 1.51271 * 108.53689 * 305.37124 * 17 16 14 19 19 C 1.37878 * 120.85190 * 231.37038 * 18 17 16 20 20 N 1.31512 * 120.00085 * 355.33463 * 19 18 17 21 21 Si 1.86800 * 119.99872 * 175.33493 * 19 18 17 22 22 H 1.48497 * 109.47544 * 5.62769 * 21 19 18 23 23 H 1.48508 * 109.46904 * 125.62857 * 21 19 18 24 24 H 1.48497 * 109.47264 * 245.62279 * 21 19 18 25 25 C 1.51273 * 118.30086 * 51.34206 * 18 17 16 26 26 C 1.52968 * 109.41375 * 279.10354 * 14 13 10 27 27 H 1.09005 * 109.47419 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47126 * 299.99417 * 1 2 3 29 29 H 1.08999 * 109.47533 * 59.99367 * 1 2 3 30 30 H 1.08993 * 109.46597 * 240.00424 * 2 1 3 31 31 H 1.08993 * 109.47315 * 120.00248 * 2 1 3 32 32 H 1.09007 * 109.47231 * 60.00639 * 3 2 1 33 33 H 1.08993 * 109.47356 * 300.00223 * 3 2 1 34 34 H 1.09007 * 109.47126 * 60.00583 * 4 3 2 35 35 H 1.08999 * 109.47533 * 300.00633 * 4 3 2 36 36 H 1.08996 * 109.46764 * 300.27118 * 8 6 5 37 37 H 1.08993 * 109.47000 * 60.27085 * 8 6 5 38 38 H 1.08996 * 109.47442 * 299.99569 * 9 8 6 39 39 H 1.08998 * 109.47625 * 59.99801 * 9 8 6 40 40 H 1.08998 * 109.47323 * 184.99119 * 12 10 9 41 41 H 1.09007 * 109.46926 * 304.98846 * 12 10 9 42 42 H 1.08996 * 109.46878 * 64.98629 * 12 10 9 43 43 H 1.00901 * 110.99521 * 26.78047 * 13 10 9 44 44 H 1.08999 * 109.48304 * 303.68236 * 16 14 13 45 45 H 1.08996 * 109.48772 * 63.72559 * 16 14 13 46 46 H 1.08998 * 109.63378 * 185.65640 * 17 16 14 47 47 H 1.09007 * 109.78525 * 65.17623 * 17 16 14 48 48 H 0.97000 * 120.00020 * 180.02562 * 20 19 18 49 49 H 1.08996 * 109.62927 * 188.94070 * 25 18 17 50 50 H 1.09007 * 109.62309 * 68.36661 * 25 18 17 51 51 H 1.08996 * 109.47662 * 296.27718 * 26 14 13 52 52 H 1.09002 * 109.47852 * 56.30534 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 8 4.0539 2.8115 0.0000 6 6 5.3846 2.9874 -0.0010 7 8 6.1207 2.0292 -0.0019 8 6 5.9606 4.3800 -0.0067 9 6 7.4885 4.2999 -0.0135 10 6 8.0732 5.7137 -0.0200 11 1 7.6713 6.2769 0.8223 12 6 9.5967 5.6361 0.0989 13 7 7.7138 6.3866 -1.2753 14 6 7.6133 7.8396 -1.0837 15 1 8.4036 8.1718 -0.4106 16 6 7.7682 8.5423 -2.4334 17 6 7.7560 10.0598 -2.2217 18 6 6.4984 10.4301 -1.4669 19 6 5.6614 11.4225 -1.9312 20 7 5.9976 12.1232 -2.9921 21 14 4.0501 11.7718 -1.0532 22 1 3.9693 10.9481 0.1797 23 1 3.9849 13.2109 -0.6922 24 1 2.9149 11.4345 -1.9492 25 6 6.1822 9.6831 -0.1901 26 6 6.2514 8.1792 -0.4755 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8932 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6766 1.9564 0.8901 33 1 1.6766 1.9564 -0.8899 34 1 3.9329 0.9289 -0.8910 35 1 3.9337 0.9285 0.8890 36 1 5.6206 4.9101 -0.8963 37 1 5.6288 4.9140 0.8836 38 1 7.8285 3.7697 0.8760 39 1 7.8204 3.7658 -0.9038 40 1 10.0063 6.6426 0.1836 41 1 9.8631 5.0597 0.9850 42 1 10.0060 5.1505 -0.7869 43 1 6.8570 6.0117 -1.6540 44 1 8.7123 8.2467 -2.8910 45 1 6.9430 8.2599 -3.0871 46 1 7.7651 10.5645 -3.1878 47 1 8.6309 10.3589 -1.6443 48 1 5.4089 12.8217 -3.3185 49 1 5.1801 9.9456 0.1491 50 1 6.9115 9.9441 0.5769 51 1 5.4622 7.9053 -1.1756 52 1 6.1206 7.6261 0.4546 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257379441.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:41:14 Heat of formation + Delta-G solvation = -145.619221 kcal Electronic energy + Delta-G solvation = -26309.315349 eV Core-core repulsion = 22692.372811 eV Total energy + Delta-G solvation = -3616.942538 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.59658 -39.69621 -38.07683 -37.06055 -35.93704 -34.42077 -32.62031 -31.42200 -31.00400 -30.31782 -27.89076 -26.26598 -24.37154 -23.63798 -23.02346 -22.20306 -21.76227 -21.08580 -20.95480 -18.71404 -18.04741 -17.94082 -17.38928 -16.81366 -16.39521 -16.18512 -16.01459 -15.03002 -14.99457 -14.87174 -14.73084 -14.44323 -14.34723 -14.10995 -13.95809 -13.86378 -13.52177 -13.17928 -13.04626 -12.85319 -12.82896 -12.71325 -12.67283 -12.40361 -12.30859 -12.17470 -12.02630 -11.94368 -11.83495 -11.75736 -11.66314 -11.48964 -11.44096 -11.41252 -11.14157 -10.69313 -10.56489 -10.45003 -9.10157 -8.12145 -6.06251 1.13324 1.39928 1.43377 1.51730 1.63251 2.44198 3.11971 3.36377 3.53577 3.78771 3.85187 3.89890 3.99886 4.11940 4.16780 4.22361 4.29263 4.34487 4.41300 4.51084 4.54355 4.57368 4.66660 4.73390 4.80687 4.82215 4.87206 4.92494 4.95820 4.99616 5.06462 5.08847 5.13714 5.14880 5.17461 5.23886 5.28205 5.35341 5.37825 5.39533 5.45276 5.47700 5.53118 5.65035 5.69127 5.83524 5.90033 6.33353 6.41146 6.67545 6.68941 7.01504 7.51489 8.98747 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.011694 B = 0.002911 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.720910 B = 9617.615310 C =11536.282904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.116 4.116 4 C 0.060 3.940 5 O -0.364 6.364 6 C 0.467 3.533 7 O -0.537 6.537 8 C -0.117 4.117 9 C -0.099 4.099 10 C 0.084 3.916 11 H 0.052 0.948 12 C -0.136 4.136 13 N -0.687 5.687 14 C 0.113 3.887 15 H 0.060 0.940 16 C -0.083 4.083 17 C 0.005 3.995 18 C -0.492 4.492 19 C 0.014 3.986 20 N -0.937 5.937 21 Si 0.934 3.066 22 H -0.230 1.230 23 H -0.291 1.291 24 H -0.285 1.285 25 C -0.027 4.027 26 C -0.128 4.128 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.112 0.888 37 H 0.122 0.878 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.043 0.957 41 H 0.070 0.930 42 H 0.055 0.945 43 H 0.339 0.661 44 H 0.042 0.958 45 H 0.035 0.965 46 H 0.018 0.982 47 H -0.006 1.006 48 H 0.260 0.740 49 H 0.043 0.957 50 H 0.016 0.984 51 H 0.049 0.951 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.449 -23.022 8.958 25.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.153 4.153 4 C -0.013 4.013 5 O -0.281 6.281 6 C 0.312 3.688 7 O -0.427 6.427 8 C -0.155 4.155 9 C -0.137 4.137 10 C -0.025 4.025 11 H 0.070 0.930 12 C -0.194 4.194 13 N -0.319 5.319 14 C 0.003 3.997 15 H 0.078 0.922 16 C -0.122 4.122 17 C -0.033 4.033 18 C -0.511 4.511 19 C -0.183 4.183 20 N -0.577 5.577 21 Si 0.761 3.239 22 H -0.154 1.154 23 H -0.218 1.218 24 H -0.212 1.212 25 C -0.065 4.065 26 C -0.167 4.167 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.130 0.870 37 H 0.140 0.860 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.062 0.938 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.159 0.841 44 H 0.061 0.939 45 H 0.054 0.946 46 H 0.037 0.963 47 H 0.012 0.988 48 H 0.069 0.931 49 H 0.061 0.939 50 H 0.034 0.966 51 H 0.068 0.932 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.662 -23.206 8.617 25.393 hybrid contribution -1.384 0.786 0.235 1.609 sum -7.046 -22.419 8.852 25.112 Atomic orbital electron populations 1.21758 0.94591 1.02391 1.02210 1.21434 0.96855 0.94601 1.02871 1.21622 0.90918 0.98855 1.03940 1.23288 0.96118 0.79337 1.02564 1.86519 1.24464 1.33465 1.83657 1.24093 0.80400 0.93174 0.71108 1.90649 1.60943 1.44246 1.46839 1.21578 0.96765 0.89997 1.07125 1.21537 0.91593 0.96474 1.04098 1.21545 0.96545 0.93147 0.91280 0.93018 1.21759 0.94404 1.01344 1.01884 1.60773 1.40020 1.03343 1.27727 1.21210 0.95952 0.86460 0.96044 0.92174 1.21377 0.98779 0.95796 0.96246 1.19357 0.94594 0.92845 0.96519 1.20690 1.06730 1.16503 1.07210 1.25701 1.01311 0.95566 0.95755 1.70022 1.38573 1.23087 1.26029 0.85882 0.80085 0.77583 0.80364 1.15358 1.21813 1.21155 1.19970 0.97799 0.93623 0.95139 1.22150 0.97625 0.97568 0.99342 0.91741 0.92406 0.92561 0.91379 0.91185 0.90545 0.90805 0.91420 0.91142 0.86967 0.85956 0.89919 0.91092 0.93775 0.91115 0.92540 0.84072 0.93919 0.94571 0.96279 0.98761 0.93087 0.93923 0.96593 0.93248 0.92149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.91 71.98 0.71 -0.66 16 2 C -0.12 -1.21 5.93 30.59 0.18 -1.03 16 3 C -0.12 -1.51 5.59 30.59 0.17 -1.33 16 4 C 0.06 1.03 5.47 71.98 0.39 1.43 16 5 O -0.36 -7.70 10.22 -51.43 -0.53 -8.23 16 6 C 0.47 10.45 7.96 71.24 0.57 11.02 16 7 O -0.54 -14.65 15.73 21.97 0.35 -14.31 16 8 C -0.12 -2.18 5.65 29.85 0.17 -2.01 16 9 C -0.10 -1.98 4.06 30.59 0.12 -1.86 16 10 C 0.08 1.93 2.41 44.92 0.11 2.04 16 11 H 0.05 1.19 6.81 -2.39 -0.02 1.18 16 12 C -0.14 -3.07 9.44 71.98 0.68 -2.39 16 13 N -0.69 -19.21 6.05 -469.59 -2.84 -22.05 16 14 C 0.11 3.94 2.20 44.89 0.10 4.04 16 15 H 0.06 2.21 7.50 -2.39 -0.02 2.19 16 16 C -0.08 -3.51 5.54 30.66 0.17 -3.34 16 17 C 0.00 0.25 5.95 30.11 0.18 0.43 16 18 C -0.49 -25.63 5.51 -16.17 -0.09 -25.72 16 19 C 0.01 0.76 5.46 84.66 0.46 1.22 16 20 N -0.94 -55.82 12.75 21.45 0.27 -55.55 16 21 Si 0.93 42.17 28.02 68.60 1.92 44.09 16 22 H -0.23 -9.33 5.43 99.48 0.54 -8.79 16 23 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 24 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 25 C -0.03 -1.19 5.62 30.11 0.17 -1.02 16 26 C -0.13 -4.50 5.19 30.66 0.16 -4.34 16 27 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 28 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 29 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.07 0.64 8.14 -2.39 -0.02 0.63 16 32 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 33 H 0.07 0.99 8.14 -2.39 -0.02 0.98 16 34 H 0.07 1.18 8.13 -2.38 -0.02 1.16 16 35 H 0.07 1.17 8.13 -2.39 -0.02 1.15 16 36 H 0.11 2.03 6.45 -2.39 -0.02 2.02 16 37 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.08 1.58 8.10 -2.39 -0.02 1.56 16 39 H 0.07 1.58 8.10 -2.39 -0.02 1.56 16 40 H 0.04 1.10 7.76 -2.39 -0.02 1.08 16 41 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 42 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.34 8.84 6.27 -89.69 -0.56 8.28 16 44 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.02 1.08 7.11 -2.39 -0.02 1.06 16 47 H -0.01 -0.31 8.14 -2.38 -0.02 -0.33 16 48 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 49 H 0.04 1.82 4.27 -2.39 -0.01 1.81 16 50 H 0.02 0.68 8.14 -2.38 -0.02 0.66 16 51 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 52 H 0.06 1.76 7.13 -2.39 -0.02 1.75 16 Total: -1.00 -63.43 400.52 3.57 -59.87 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: 0.14 Total: 19.71 kcal Atomic # 6 Polarization: -27.79 SS G_CDS: 4.26 Total: -23.53 kcal Atomic # 7 Polarization: -75.03 SS G_CDS: -2.57 Total: -77.60 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.18 Total: -22.54 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 1.92 Total: 44.09 kcal Total: -63.43 3.57 -59.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257379441.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.754 kcal (2) G-P(sol) polarization free energy of solvation -63.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds