Wall clock time and date at job start Fri Apr 10 2020 22:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47328 * 2 1 4 4 C 1.53001 * 109.47067 * 179.97438 * 3 2 1 5 5 N 1.46893 * 109.46806 * 174.30923 * 4 3 2 6 6 C 1.46903 * 110.99872 * 286.34145 * 5 4 3 7 7 C 1.52997 * 109.47355 * 296.45554 * 6 5 4 8 8 H 1.09004 * 109.46935 * 55.56308 * 7 6 5 9 9 C 1.52999 * 109.47470 * 295.56451 * 7 6 5 10 10 C 1.52996 * 109.47090 * 175.55968 * 7 6 5 11 11 C 1.50698 * 109.47232 * 184.99995 * 10 7 6 12 12 H 1.08007 * 120.00151 * 0.02562 * 11 10 7 13 13 C 1.37884 * 120.00426 * 180.02562 * 11 10 7 14 14 N 1.31513 * 119.99919 * 180.02562 * 13 11 10 15 15 Si 1.86795 * 119.99550 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47313 * 89.99957 * 15 13 11 17 17 H 1.48497 * 109.47065 * 210.00014 * 15 13 11 18 18 H 1.48494 * 109.47377 * 330.00089 * 15 13 11 19 19 C 1.46900 * 111.00302 * 50.30006 * 5 4 3 20 20 H 1.09003 * 109.46838 * 308.19949 * 19 5 4 21 21 C 1.53002 * 109.46975 * 188.20325 * 19 5 4 22 22 C 1.53002 * 109.46893 * 179.97438 * 21 19 5 23 23 C 1.52993 * 109.47200 * 59.99766 * 22 21 19 24 24 C 1.53002 * 109.47389 * 299.99931 * 23 22 21 25 25 C 1.52993 * 109.47178 * 68.20054 * 19 5 4 26 26 H 1.09003 * 109.47322 * 60.00191 * 25 19 5 27 27 O 1.42899 * 109.47326 * 300.00036 * 25 19 5 28 28 C 1.42904 * 113.99877 * 149.99946 * 27 25 19 29 29 H 1.09002 * 109.47354 * 59.99951 * 1 2 3 30 30 H 1.09001 * 109.47935 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47197 * 300.00045 * 1 2 3 32 32 H 1.09000 * 109.46757 * 239.99656 * 2 1 3 33 33 H 1.09002 * 109.46933 * 120.00384 * 2 1 3 34 34 H 1.08999 * 109.47019 * 59.99845 * 3 2 1 35 35 H 1.08993 * 109.46847 * 300.00054 * 3 2 1 36 36 H 1.09003 * 109.46850 * 54.30765 * 4 3 2 37 37 H 1.09006 * 109.46736 * 294.31104 * 4 3 2 38 38 H 1.09000 * 109.46932 * 56.46103 * 6 5 4 39 39 H 1.09003 * 109.46870 * 176.45772 * 6 5 4 40 40 H 1.08994 * 109.47540 * 179.97438 * 9 7 6 41 41 H 1.09004 * 109.46925 * 299.99863 * 9 7 6 42 42 H 1.08997 * 109.47413 * 59.99393 * 9 7 6 43 43 H 1.08991 * 109.47417 * 305.00397 * 10 7 6 44 44 H 1.09003 * 109.47375 * 65.00441 * 10 7 6 45 45 H 0.97006 * 119.99567 * 179.97438 * 14 13 11 46 46 H 1.08998 * 109.47464 * 299.99631 * 21 19 5 47 47 H 1.09005 * 109.47257 * 59.99898 * 21 19 5 48 48 H 1.08995 * 109.46806 * 180.02562 * 22 21 19 49 49 H 1.09003 * 109.46898 * 299.99610 * 22 21 19 50 50 H 1.09003 * 109.47322 * 60.00103 * 23 22 21 51 51 H 1.09004 * 109.47114 * 179.97438 * 23 22 21 52 52 H 1.08995 * 109.46740 * 300.00270 * 24 23 22 53 53 H 1.08999 * 109.47389 * 179.97438 * 24 23 22 54 54 H 1.09003 * 109.46819 * 180.02562 * 28 27 25 55 55 H 1.09002 * 109.46952 * 300.00178 * 28 27 25 56 56 H 1.09001 * 109.47204 * 60.00177 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0597 2.8205 -0.1367 6 6 3.8719 3.3116 -1.5084 7 6 4.7142 2.4718 -2.4707 8 1 4.4563 1.4190 -2.3552 9 6 6.1983 2.6707 -2.1562 10 6 4.4344 2.9106 -3.9094 11 6 5.1691 2.0039 -4.8630 12 1 5.7747 1.1953 -4.4810 13 6 5.0682 2.2067 -6.2231 14 7 5.7090 1.4151 -7.0552 15 14 4.0214 3.6056 -6.8836 16 1 4.8543 4.8282 -7.0141 17 1 3.4787 3.2321 -8.2144 18 1 2.8992 3.8689 -5.9475 19 6 3.4089 3.7098 0.8347 20 1 2.3273 3.5936 0.7658 21 6 3.7864 5.1609 0.5303 22 6 3.1080 6.0872 1.5417 23 6 3.5703 5.7255 2.9545 24 6 3.1928 4.2744 3.2589 25 6 3.8717 3.3479 2.2473 26 1 4.9533 3.4641 2.3163 27 8 3.5191 1.9926 2.5316 28 6 4.4109 1.3374 3.4359 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3635 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8899 36 1 3.9336 0.8427 -0.8338 37 1 3.9329 1.0194 0.9375 38 1 2.8198 3.2320 -1.7820 39 1 4.1846 4.3542 -1.5670 40 1 6.7984 2.0720 -2.8414 41 1 6.4562 3.7234 -2.2716 42 1 6.3976 2.3581 -1.1312 43 1 3.3638 2.8529 -4.1052 44 1 4.7745 3.9367 -4.0490 45 1 5.6377 1.5575 -8.0121 46 1 4.8680 5.2771 0.5992 47 1 3.4566 5.4187 -0.4761 48 1 3.3766 7.1210 1.3246 49 1 2.0264 5.9709 1.4723 50 1 4.6519 5.8418 3.0239 51 1 3.0873 6.3857 3.6750 52 1 2.1113 4.1582 3.1895 53 1 3.5225 4.0165 4.2653 54 1 4.0747 0.3135 3.5996 55 1 5.4150 1.3265 3.0119 56 1 4.4233 1.8724 4.3855 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181775356.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:39:17 Heat of formation + Delta-G solvation = -88.876940 kcal Electronic energy + Delta-G solvation = -28777.209030 eV Core-core repulsion = 25298.560116 eV Total energy + Delta-G solvation = -3478.648914 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 311.257 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.13800 -38.63201 -37.22930 -36.48344 -34.94805 -33.92402 -31.24636 -30.51372 -29.79848 -28.59919 -27.17072 -26.72360 -24.74337 -23.90916 -22.93430 -22.43037 -21.64675 -20.72446 -19.89509 -18.84019 -17.62394 -17.27846 -16.61610 -16.37815 -16.01527 -15.91437 -15.71820 -15.37856 -15.04463 -14.83622 -14.70487 -14.45681 -14.30994 -14.20683 -13.94846 -13.46757 -13.41520 -13.32160 -13.07024 -12.81394 -12.71819 -12.64007 -12.49254 -12.30417 -12.19741 -12.15031 -11.98123 -11.86324 -11.72459 -11.68905 -11.56568 -11.52066 -11.33373 -11.25054 -11.16212 -11.02682 -10.82472 -10.71690 -10.07773 -8.97431 -8.25750 -6.27575 1.34554 1.36406 1.48173 2.37473 2.87344 3.03439 3.09452 3.75329 3.94057 3.97102 4.10050 4.10769 4.19375 4.25964 4.30065 4.31489 4.35394 4.42341 4.48824 4.50553 4.54192 4.58990 4.62307 4.65202 4.75134 4.81331 4.86686 4.89399 4.92436 4.95507 4.97894 5.00154 5.02090 5.07525 5.10307 5.11035 5.19551 5.24311 5.25365 5.28274 5.33859 5.36315 5.40432 5.43439 5.45306 5.53006 5.56733 5.61946 5.72642 5.76015 6.25838 6.35745 6.38583 6.41581 6.79644 7.35724 8.91179 Molecular weight = 311.26amu Principal moments of inertia in cm(-1) A = 0.013194 B = 0.004001 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.618906 B = 6996.574317 C = 7848.373939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C -0.136 4.136 4 C 0.051 3.949 5 N -0.526 5.526 6 C 0.063 3.937 7 C -0.067 4.067 8 H 0.046 0.954 9 C -0.111 4.111 10 C -0.004 4.004 11 C -0.516 4.516 12 H 0.033 0.967 13 C 0.003 3.997 14 N -0.953 5.953 15 Si 0.946 3.054 16 H -0.266 1.266 17 H -0.285 1.285 18 H -0.250 1.250 19 C 0.086 3.914 20 H 0.045 0.955 21 C -0.118 4.118 22 C -0.116 4.116 23 C -0.113 4.113 24 C -0.133 4.133 25 C 0.104 3.896 26 H 0.062 0.938 27 O -0.389 6.389 28 C 0.027 3.973 29 H 0.043 0.957 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.045 0.955 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.035 0.965 36 H 0.047 0.953 37 H 0.102 0.898 38 H 0.020 0.980 39 H 0.082 0.918 40 H 0.024 0.976 41 H 0.045 0.955 42 H 0.062 0.938 43 H 0.009 0.991 44 H 0.017 0.983 45 H 0.264 0.736 46 H 0.069 0.931 47 H 0.063 0.937 48 H 0.075 0.925 49 H 0.061 0.939 50 H 0.066 0.934 51 H 0.078 0.922 52 H 0.063 0.937 53 H 0.073 0.927 54 H 0.091 0.909 55 H 0.039 0.961 56 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.953 6.946 25.698 27.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C -0.175 4.175 4 C -0.077 4.077 5 N -0.248 5.248 6 C -0.064 4.064 7 C -0.086 4.086 8 H 0.064 0.936 9 C -0.168 4.168 10 C -0.042 4.042 11 C -0.554 4.554 12 H 0.051 0.949 13 C -0.193 4.193 14 N -0.595 5.595 15 Si 0.770 3.230 16 H -0.191 1.191 17 H -0.211 1.211 18 H -0.174 1.174 19 C -0.022 4.022 20 H 0.062 0.938 21 C -0.156 4.156 22 C -0.154 4.154 23 C -0.150 4.150 24 C -0.171 4.171 25 C 0.046 3.954 26 H 0.080 0.920 27 O -0.308 6.308 28 C -0.069 4.069 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.053 0.947 36 H 0.066 0.934 37 H 0.120 0.880 38 H 0.039 0.961 39 H 0.100 0.900 40 H 0.043 0.957 41 H 0.064 0.936 42 H 0.081 0.919 43 H 0.028 0.972 44 H 0.035 0.965 45 H 0.073 0.927 46 H 0.088 0.912 47 H 0.082 0.918 48 H 0.094 0.906 49 H 0.080 0.920 50 H 0.085 0.915 51 H 0.097 0.903 52 H 0.082 0.918 53 H 0.091 0.909 54 H 0.109 0.891 55 H 0.057 0.943 56 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.560 6.833 25.549 27.506 hybrid contribution -0.734 0.078 -1.244 1.446 sum -8.294 6.911 24.305 26.595 Atomic orbital electron populations 1.21728 0.95390 1.01840 1.01434 1.21387 0.96254 0.96347 1.01472 1.22014 0.97545 0.97362 1.00543 1.22471 0.92861 0.89768 1.02551 1.62268 1.57035 1.02380 1.03157 1.22189 0.96772 0.99397 0.88061 1.20906 0.96005 0.98314 0.93338 0.93554 1.21441 0.95189 1.00273 0.99914 1.19538 0.95369 0.95716 0.93555 1.21428 1.28441 1.14203 0.91336 0.94868 1.25967 0.96891 0.99003 0.97437 1.70075 1.45315 1.40936 1.03167 0.85717 0.80050 0.79556 0.77687 1.19065 1.21132 1.17411 1.21797 0.96770 0.92561 0.91089 0.93762 1.21735 1.01570 0.92712 0.99594 1.21537 1.00178 0.99219 0.94430 1.21486 1.01636 0.95288 0.96638 1.21981 1.01084 0.95122 0.98893 1.22114 0.98511 0.81850 0.92893 0.92008 1.87954 1.52608 1.25288 1.64938 1.22835 0.93428 0.98091 0.92553 0.93785 0.92074 0.92275 0.93624 0.91262 0.91046 0.94674 0.93425 0.88006 0.96138 0.89995 0.95673 0.93608 0.91914 0.97243 0.96514 0.92701 0.91236 0.91833 0.90613 0.92040 0.91548 0.90334 0.91829 0.90856 0.89097 0.94268 0.93215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 9.91 71.98 0.71 -2.40 16 2 C -0.12 -2.82 5.93 30.59 0.18 -2.64 16 3 C -0.14 -3.59 4.07 30.59 0.12 -3.46 16 4 C 0.05 1.45 4.62 86.31 0.40 1.84 16 5 N -0.53 -14.73 4.02 -870.98 -3.51 -18.24 16 6 C 0.06 2.07 3.75 86.30 0.32 2.40 16 7 C -0.07 -2.72 2.23 -10.80 -0.02 -2.74 16 8 H 0.05 2.03 6.04 -2.39 -0.01 2.02 16 9 C -0.11 -4.35 8.89 71.98 0.64 -3.71 16 10 C 0.00 -0.19 3.52 29.85 0.10 -0.08 16 11 C -0.52 -30.45 8.96 25.60 0.23 -30.22 16 12 H 0.03 2.16 7.30 -2.91 -0.02 2.14 16 13 C 0.00 0.18 5.47 84.66 0.46 0.65 16 14 N -0.95 -61.22 13.96 21.45 0.30 -60.92 16 15 Si 0.95 45.56 27.47 68.60 1.88 47.44 16 16 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 17 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 18 H -0.25 -11.30 6.54 99.48 0.65 -10.65 16 19 C 0.09 1.97 1.50 44.91 0.07 2.04 16 20 H 0.04 1.10 5.82 -2.39 -0.01 1.09 16 21 C -0.12 -2.42 4.55 30.60 0.14 -2.29 16 22 C -0.12 -1.78 5.92 30.59 0.18 -1.60 16 23 C -0.11 -1.50 5.92 30.59 0.18 -1.31 16 24 C -0.13 -2.02 5.54 30.61 0.17 -1.85 16 25 C 0.10 2.04 2.24 30.61 0.07 2.11 16 26 H 0.06 1.27 7.79 -2.39 -0.02 1.25 16 27 O -0.39 -7.97 6.21 -148.98 -0.93 -8.89 16 28 C 0.03 0.42 10.44 113.37 1.18 1.61 16 29 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.07 1.82 5.76 -2.39 -0.01 1.80 16 35 H 0.03 1.05 6.60 -2.39 -0.02 1.03 16 36 H 0.05 1.59 5.79 -2.39 -0.01 1.58 16 37 H 0.10 2.73 5.28 -2.38 -0.01 2.71 16 38 H 0.02 0.70 6.58 -2.39 -0.02 0.68 16 39 H 0.08 2.54 5.71 -2.39 -0.01 2.53 16 40 H 0.02 1.11 6.95 -2.39 -0.02 1.10 16 41 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.06 2.20 7.74 -2.39 -0.02 2.18 16 43 H 0.01 0.45 7.20 -2.39 -0.02 0.43 16 44 H 0.02 0.78 7.57 -2.39 -0.02 0.76 16 45 H 0.26 15.84 8.31 -92.70 -0.77 15.07 16 46 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 47 H 0.06 1.43 6.16 -2.38 -0.01 1.41 16 48 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 49 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 50 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 51 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 52 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16 53 H 0.07 0.97 7.87 -2.39 -0.02 0.95 16 54 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 55 H 0.04 0.64 8.09 -2.39 -0.02 0.62 16 56 H 0.05 0.63 7.87 -2.39 -0.02 0.61 16 Total: -1.00 -65.97 402.15 3.65 -62.33 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 0.75 Total: 19.94 kcal Atomic # 6 Polarization: -46.81 SS G_CDS: 5.15 Total: -41.66 kcal Atomic # 7 Polarization: -75.95 SS G_CDS: -3.21 Total: -79.16 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: -0.93 Total: -8.89 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.88 Total: 47.44 kcal Total: -65.97 3.65 -62.33 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181775356.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.547 kcal (2) G-P(sol) polarization free energy of solvation -65.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds