Wall clock time and date at job start Fri Apr 10 2020 22:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47070 * 2 1 4 4 N 1.46897 * 109.46912 * 120.00184 * 2 1 3 5 5 C 1.46895 * 111.00071 * 298.95202 * 4 2 1 6 6 C 1.46902 * 110.99799 * 175.00112 * 4 2 1 7 7 C 1.50704 * 109.47006 * 189.99903 * 6 4 2 8 8 O 1.21279 * 120.00347 * 0.02562 * 7 6 4 9 9 N 1.34780 * 119.99687 * 180.02562 * 7 6 4 10 10 C 1.46927 * 120.63172 * 359.97438 * 9 7 6 11 11 C 1.53194 * 108.77446 * 233.58783 * 10 9 7 12 12 C 1.53040 * 109.31289 * 305.36395 * 11 10 9 13 13 H 1.09000 * 109.46214 * 301.35918 * 12 11 10 14 14 C 1.53001 * 109.45838 * 181.38787 * 12 11 10 15 15 N 1.46490 * 109.47264 * 64.99938 * 14 12 11 16 16 C 1.36935 * 120.00121 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00139 * 0.02562 * 16 15 14 18 18 C 1.38816 * 120.00401 * 180.02562 * 16 15 14 19 19 N 1.31624 * 119.99569 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00172 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47055 * 180.02562 * 20 18 16 22 22 H 1.48505 * 109.46653 * 299.99639 * 20 18 16 23 23 H 1.48495 * 109.47483 * 60.00002 * 20 18 16 24 24 C 1.53041 * 109.53608 * 61.37030 * 12 11 10 25 25 H 1.09000 * 109.49803 * 178.68257 * 24 12 11 26 26 C 1.52994 * 109.50005 * 58.58381 * 24 12 11 27 27 C 1.46919 * 120.63064 * 179.97438 * 9 7 6 28 28 H 1.09000 * 109.47485 * 299.99768 * 1 2 3 29 29 H 1.09002 * 109.47383 * 60.00222 * 1 2 3 30 30 H 1.09004 * 109.47116 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46818 * 240.00014 * 2 1 3 32 32 H 1.09005 * 109.46763 * 60.00278 * 3 2 1 33 33 H 1.08998 * 109.46851 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.47234 * 300.00636 * 3 2 1 35 35 H 1.08994 * 109.47462 * 296.04714 * 5 4 2 36 36 H 1.08998 * 109.46886 * 56.04951 * 5 4 2 37 37 H 1.09007 * 109.47334 * 176.04852 * 5 4 2 38 38 H 1.08997 * 109.46916 * 69.99943 * 6 4 2 39 39 H 1.09002 * 109.47259 * 310.00142 * 6 4 2 40 40 H 1.08995 * 109.58602 * 113.79949 * 10 9 7 41 41 H 1.08997 * 109.58718 * 353.37330 * 10 9 7 42 42 H 1.09006 * 109.49338 * 185.41161 * 11 10 9 43 43 H 1.09007 * 109.49789 * 65.31890 * 11 10 9 44 44 H 1.09003 * 109.46836 * 304.99645 * 14 12 11 45 45 H 1.08999 * 109.47071 * 185.00684 * 14 12 11 46 46 H 0.97000 * 120.00577 * 0.02562 * 15 14 12 47 47 H 0.97001 * 119.99885 * 359.97438 * 19 18 16 48 48 H 1.09000 * 109.47183 * 60.00075 * 26 24 12 49 49 H 1.09005 * 109.46993 * 180.02562 * 26 24 12 50 50 H 1.09001 * 109.47315 * 299.99786 * 26 24 12 51 51 H 1.09004 * 109.58401 * 246.20305 * 27 9 7 52 52 H 1.09004 * 109.58701 * 6.62120 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.5692 -0.0121 2.4209 6 6 3.4832 -0.8165 1.1751 7 6 3.9279 -1.7366 2.2828 8 8 3.1065 -2.2399 3.0195 9 7 5.2384 -2.0001 2.4545 10 6 6.2453 -1.3984 1.5697 11 6 7.1178 -2.5137 0.9854 12 6 7.7027 -3.3492 2.1265 13 1 8.2888 -2.7066 2.7836 14 6 8.6026 -4.4430 1.5479 15 7 9.7562 -3.8276 0.8872 16 6 10.7052 -4.6154 0.2924 17 1 10.6030 -5.6904 0.3100 18 6 11.7986 -4.0324 -0.3332 19 7 11.9234 -2.7222 -0.3542 20 14 13.0928 -5.1071 -1.1453 21 1 14.1495 -4.2477 -1.7372 22 1 13.6978 -6.0061 -0.1298 23 1 12.4605 -5.9217 -2.2138 24 6 6.5662 -3.9928 2.9241 25 1 6.9840 -4.6064 3.7223 26 6 5.7220 -4.8676 1.9952 27 6 5.6874 -2.8945 3.5302 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.6767 1.9563 0.8901 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 2.0052 0.9859 2.4627 36 1 0.4821 0.0663 2.4132 37 1 1.8861 -0.5839 3.2932 38 1 3.9334 0.1661 1.3162 39 1 3.7973 -1.2255 0.2148 40 1 6.8674 -0.7086 2.1400 41 1 5.7479 -0.8622 0.7615 42 1 7.9283 -2.0745 0.4035 43 1 6.5111 -3.1509 0.3418 44 1 8.0395 -5.0309 0.8230 45 1 8.9481 -5.0924 2.3523 46 1 9.8482 -2.8622 0.8717 47 1 11.2511 -2.1642 0.0671 48 1 6.3483 -5.6473 1.5619 49 1 4.9125 -5.3254 2.5638 50 1 5.3034 -4.2529 1.1983 51 1 6.2639 -2.3268 4.2606 52 1 4.8219 -3.3455 4.0156 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185761378.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:40:37 Heat of formation + Delta-G solvation = -20.745236 kcal Electronic energy + Delta-G solvation = -27439.290841 eV Core-core repulsion = 23860.055996 eV Total energy + Delta-G solvation = -3579.234845 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.60922 -38.91894 -37.57079 -35.12868 -33.63091 -32.29500 -31.70039 -30.22855 -28.80550 -27.49315 -26.94637 -26.44288 -24.85693 -23.43565 -23.07402 -21.62408 -20.25517 -19.60542 -18.32245 -17.56169 -17.14194 -16.23356 -15.98550 -15.76830 -15.07024 -14.89901 -14.69832 -14.45002 -14.24158 -14.02023 -13.66229 -13.49744 -13.45235 -13.21835 -12.93876 -12.89281 -12.51141 -12.35935 -12.32112 -12.17864 -11.81279 -11.65828 -11.56538 -11.43250 -11.39001 -11.03759 -10.99329 -10.71928 -10.71652 -10.38946 -10.21066 -10.17822 -9.95258 -9.69761 -9.17264 -8.87080 -8.61674 -8.47464 -6.99320 -6.11025 -3.09937 2.58939 2.82838 3.51256 3.54638 3.69740 3.72002 4.38158 4.54274 4.65383 4.71351 4.74523 4.86496 4.91717 4.94959 4.98289 5.06323 5.07619 5.19777 5.20400 5.30000 5.33439 5.38638 5.41899 5.51328 5.54900 5.61430 5.62309 5.69557 5.74964 5.77363 5.79657 5.83581 5.91249 5.93293 5.98606 6.01372 6.16688 6.22618 6.32693 6.37141 6.43032 6.58449 6.70527 6.74314 6.83189 6.86563 7.38157 7.81042 8.17624 8.75447 9.23363 10.09577 10.24848 11.37687 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.020742 B = 0.002778 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.613003 B =10075.908053 C =10845.185899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.074 3.926 3 C -0.190 4.190 4 N -0.517 5.517 5 C 0.013 3.987 6 C 0.035 3.965 7 C 0.517 3.483 8 O -0.529 6.529 9 N -0.607 5.607 10 C 0.106 3.894 11 C -0.127 4.127 12 C -0.089 4.089 13 H 0.069 0.931 14 C 0.164 3.836 15 N -0.743 5.743 16 C -0.329 4.329 17 H 0.063 0.937 18 C -0.046 4.046 19 N -0.945 5.945 20 Si 1.079 2.921 21 H -0.285 1.285 22 H -0.296 1.296 23 H -0.295 1.295 24 C -0.098 4.098 25 H 0.081 0.919 26 C -0.143 4.143 27 C 0.119 3.881 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.022 0.978 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.064 0.936 39 H 0.103 0.897 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.023 0.977 45 H 0.018 0.982 46 H 0.366 0.634 47 H 0.254 0.746 48 H 0.060 0.940 49 H 0.049 0.951 50 H 0.055 0.945 51 H 0.064 0.936 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.886 7.298 3.895 22.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.034 4.034 3 C -0.248 4.248 4 N -0.241 5.241 5 C -0.135 4.135 6 C -0.096 4.096 7 C 0.305 3.695 8 O -0.405 6.405 9 N -0.342 5.342 10 C -0.017 4.017 11 C -0.165 4.165 12 C -0.108 4.108 13 H 0.088 0.912 14 C 0.037 3.963 15 N -0.389 5.389 16 C -0.460 4.460 17 H 0.081 0.919 18 C -0.244 4.244 19 N -0.591 5.591 20 Si 0.910 3.090 21 H -0.210 1.210 22 H -0.223 1.223 23 H -0.223 1.223 24 C -0.117 4.117 25 H 0.099 0.901 26 C -0.201 4.201 27 C -0.004 4.004 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.102 0.898 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.041 0.959 36 H 0.088 0.912 37 H 0.105 0.895 38 H 0.081 0.919 39 H 0.121 0.879 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.101 0.899 43 H 0.088 0.912 44 H 0.040 0.960 45 H 0.036 0.964 46 H 0.199 0.801 47 H 0.065 0.935 48 H 0.079 0.921 49 H 0.068 0.932 50 H 0.074 0.926 51 H 0.082 0.918 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -20.123 6.314 3.443 21.369 hybrid contribution -0.846 1.083 0.766 1.573 sum -20.969 7.397 4.209 22.630 Atomic orbital electron populations 1.21856 0.93984 1.02649 1.01656 1.21781 0.96150 0.92306 0.93191 1.22515 1.01486 0.98232 1.02605 1.61917 1.08281 1.51310 1.02544 1.22624 1.01023 0.96355 0.93460 1.22029 0.89871 0.98602 0.99081 1.20430 0.81714 0.82011 0.85367 1.90638 1.51565 1.51814 1.46509 1.48113 1.05735 1.47548 1.32795 1.21847 0.90585 0.95983 0.93258 1.21964 0.99309 0.96958 0.98300 1.21314 0.95389 0.97669 0.96431 0.91243 1.20648 0.87877 0.93278 0.94542 1.42387 1.24059 1.05228 1.67229 1.20034 1.02970 0.91126 1.31864 0.91889 1.25754 0.99566 0.98470 1.00577 1.70897 1.37458 1.03260 1.47515 0.83248 0.75876 0.74040 0.75823 1.21043 1.22307 1.22296 1.21455 0.95537 0.96238 0.98520 0.90098 1.21843 0.99222 0.99509 0.99488 1.21639 0.98904 0.91052 0.88780 0.92455 0.92194 0.91678 0.89826 0.92195 0.92528 0.91836 0.95935 0.91183 0.89514 0.91857 0.87935 0.91200 0.90227 0.89906 0.91187 0.95957 0.96444 0.80086 0.93529 0.92056 0.93231 0.92626 0.91751 0.89124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.00 37.16 0.33 -0.72 16 2 C 0.07 0.61 2.96 -67.71 -0.20 0.41 16 3 C -0.19 -1.34 8.50 37.16 0.32 -1.03 16 4 N -0.52 -5.39 4.49 -236.33 -1.06 -6.45 16 5 C 0.01 0.13 8.40 60.06 0.50 0.64 16 6 C 0.04 0.36 3.23 -4.97 -0.02 0.34 16 7 C 0.52 6.61 7.42 -10.98 -0.08 6.53 16 8 O -0.53 -8.37 13.72 5.56 0.08 -8.30 16 9 N -0.61 -7.27 2.41 -172.79 -0.42 -7.69 16 10 C 0.11 1.17 6.34 -3.71 -0.02 1.15 16 11 C -0.13 -1.77 4.91 -26.61 -0.13 -1.90 16 12 C -0.09 -1.35 1.96 -90.58 -0.18 -1.53 16 13 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 14 C 0.16 3.24 5.18 -4.05 -0.02 3.22 16 15 N -0.74 -18.34 5.32 -59.91 -0.32 -18.66 16 16 C -0.33 -9.27 9.99 -15.06 -0.15 -9.42 16 17 H 0.06 1.76 7.83 -52.49 -0.41 1.35 16 18 C -0.05 -1.34 5.50 -17.43 -0.10 -1.44 16 19 N -0.95 -28.91 13.70 55.49 0.76 -28.15 16 20 Si 1.08 25.87 29.92 -169.99 -5.09 20.79 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.30 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.30 -6.78 7.11 56.52 0.40 -6.37 16 24 C -0.10 -1.27 2.72 -90.52 -0.25 -1.52 16 25 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 26 C -0.14 -1.92 8.38 37.15 0.31 -1.60 16 27 C 0.12 1.45 5.82 -3.73 -0.02 1.43 16 28 H 0.06 0.41 6.34 -51.93 -0.33 0.08 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.67 8.03 -51.93 -0.42 0.26 16 32 H 0.06 0.43 6.47 -51.93 -0.34 0.10 16 33 H 0.06 0.41 6.75 -51.93 -0.35 0.06 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.02 0.20 6.51 -51.93 -0.34 -0.14 16 36 H 0.07 0.63 6.13 -51.93 -0.32 0.32 16 37 H 0.09 1.07 5.88 -51.93 -0.31 0.77 16 38 H 0.06 0.56 6.74 -51.93 -0.35 0.21 16 39 H 0.10 0.95 7.55 -51.93 -0.39 0.56 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.08 0.72 5.93 -51.93 -0.31 0.41 16 42 H 0.08 1.31 7.15 -51.93 -0.37 0.94 16 43 H 0.07 1.01 6.34 -51.93 -0.33 0.68 16 44 H 0.02 0.46 6.74 -51.93 -0.35 0.11 16 45 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.37 9.09 5.68 -40.82 -0.23 8.85 16 47 H 0.25 7.57 6.77 -40.82 -0.28 7.29 16 48 H 0.06 0.86 6.58 -51.93 -0.34 0.52 16 49 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.05 0.77 5.97 -51.93 -0.31 0.46 16 51 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 52 H 0.09 1.18 7.01 -51.93 -0.36 0.82 16 LS Contribution 380.88 15.07 5.74 5.74 Total: -1.00 -32.72 380.88 -9.03 -41.75 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -9.03 Total: 6.41 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: 0.30 Total: -5.45 kcal Atomic # 7 Polarization: -59.91 SS G_CDS: -1.04 Total: -60.95 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: 0.08 Total: -8.30 kcal Atomic # 14 Polarization: 25.87 SS G_CDS: -5.09 Total: 20.79 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.72 -9.03 -41.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185761378.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.008 kcal (2) G-P(sol) polarization free energy of solvation -32.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds