Wall clock time and date at job start Fri Apr 10 2020 22:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47070 * 2 1 4 4 N 1.46897 * 109.46912 * 120.00184 * 2 1 3 5 5 C 1.46895 * 111.00071 * 298.95202 * 4 2 1 6 6 C 1.46902 * 110.99799 * 175.00112 * 4 2 1 7 7 C 1.50704 * 109.47006 * 189.99903 * 6 4 2 8 8 O 1.21279 * 120.00347 * 0.02562 * 7 6 4 9 9 N 1.34780 * 119.99687 * 180.02562 * 7 6 4 10 10 C 1.46927 * 120.63172 * 359.97438 * 9 7 6 11 11 C 1.53194 * 108.77446 * 233.58783 * 10 9 7 12 12 C 1.53040 * 109.31289 * 305.36395 * 11 10 9 13 13 H 1.09000 * 109.46214 * 301.35918 * 12 11 10 14 14 C 1.53001 * 109.45838 * 181.38787 * 12 11 10 15 15 N 1.46490 * 109.47264 * 64.99938 * 14 12 11 16 16 C 1.36935 * 120.00121 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00139 * 0.02562 * 16 15 14 18 18 C 1.38816 * 120.00401 * 180.02562 * 16 15 14 19 19 N 1.31624 * 119.99569 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00172 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47055 * 180.02562 * 20 18 16 22 22 H 1.48505 * 109.46653 * 299.99639 * 20 18 16 23 23 H 1.48495 * 109.47483 * 60.00002 * 20 18 16 24 24 C 1.53041 * 109.53608 * 61.37030 * 12 11 10 25 25 H 1.09000 * 109.49803 * 178.68257 * 24 12 11 26 26 C 1.52994 * 109.50005 * 58.58381 * 24 12 11 27 27 C 1.46919 * 120.63064 * 179.97438 * 9 7 6 28 28 H 1.09000 * 109.47485 * 299.99768 * 1 2 3 29 29 H 1.09002 * 109.47383 * 60.00222 * 1 2 3 30 30 H 1.09004 * 109.47116 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46818 * 240.00014 * 2 1 3 32 32 H 1.09005 * 109.46763 * 60.00278 * 3 2 1 33 33 H 1.08998 * 109.46851 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.47234 * 300.00636 * 3 2 1 35 35 H 1.08994 * 109.47462 * 296.04714 * 5 4 2 36 36 H 1.08998 * 109.46886 * 56.04951 * 5 4 2 37 37 H 1.09007 * 109.47334 * 176.04852 * 5 4 2 38 38 H 1.08997 * 109.46916 * 69.99943 * 6 4 2 39 39 H 1.09002 * 109.47259 * 310.00142 * 6 4 2 40 40 H 1.08995 * 109.58602 * 113.79949 * 10 9 7 41 41 H 1.08997 * 109.58718 * 353.37330 * 10 9 7 42 42 H 1.09006 * 109.49338 * 185.41161 * 11 10 9 43 43 H 1.09007 * 109.49789 * 65.31890 * 11 10 9 44 44 H 1.09003 * 109.46836 * 304.99645 * 14 12 11 45 45 H 1.08999 * 109.47071 * 185.00684 * 14 12 11 46 46 H 0.97000 * 120.00577 * 0.02562 * 15 14 12 47 47 H 0.97001 * 119.99885 * 359.97438 * 19 18 16 48 48 H 1.09000 * 109.47183 * 60.00075 * 26 24 12 49 49 H 1.09005 * 109.46993 * 180.02562 * 26 24 12 50 50 H 1.09001 * 109.47315 * 299.99786 * 26 24 12 51 51 H 1.09004 * 109.58401 * 246.20305 * 27 9 7 52 52 H 1.09004 * 109.58701 * 6.62120 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.5692 -0.0121 2.4209 6 6 3.4832 -0.8165 1.1751 7 6 3.9279 -1.7366 2.2828 8 8 3.1065 -2.2399 3.0195 9 7 5.2384 -2.0001 2.4545 10 6 6.2453 -1.3984 1.5697 11 6 7.1178 -2.5137 0.9854 12 6 7.7027 -3.3492 2.1265 13 1 8.2888 -2.7066 2.7836 14 6 8.6026 -4.4430 1.5479 15 7 9.7562 -3.8276 0.8872 16 6 10.7052 -4.6154 0.2924 17 1 10.6030 -5.6904 0.3100 18 6 11.7986 -4.0324 -0.3332 19 7 11.9234 -2.7222 -0.3542 20 14 13.0928 -5.1071 -1.1453 21 1 14.1495 -4.2477 -1.7372 22 1 13.6978 -6.0061 -0.1298 23 1 12.4605 -5.9217 -2.2138 24 6 6.5662 -3.9928 2.9241 25 1 6.9840 -4.6064 3.7223 26 6 5.7220 -4.8676 1.9952 27 6 5.6874 -2.8945 3.5302 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.6767 1.9563 0.8901 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 2.0052 0.9859 2.4627 36 1 0.4821 0.0663 2.4132 37 1 1.8861 -0.5839 3.2932 38 1 3.9334 0.1661 1.3162 39 1 3.7973 -1.2255 0.2148 40 1 6.8674 -0.7086 2.1400 41 1 5.7479 -0.8622 0.7615 42 1 7.9283 -2.0745 0.4035 43 1 6.5111 -3.1509 0.3418 44 1 8.0395 -5.0309 0.8230 45 1 8.9481 -5.0924 2.3523 46 1 9.8482 -2.8622 0.8717 47 1 11.2511 -2.1642 0.0671 48 1 6.3483 -5.6473 1.5619 49 1 4.9125 -5.3254 2.5638 50 1 5.3034 -4.2529 1.1983 51 1 6.2639 -2.3268 4.2606 52 1 4.8219 -3.3455 4.0156 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185761378.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:40:35 Heat of formation + Delta-G solvation = -41.504106 kcal Electronic energy + Delta-G solvation = -27440.191014 eV Core-core repulsion = 23860.055996 eV Total energy + Delta-G solvation = -3580.135017 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 2.45 seconds Orbital eigenvalues (eV) -41.61326 -39.86699 -38.54935 -36.79815 -35.00946 -33.41709 -32.68686 -31.85754 -29.64218 -28.35165 -28.13121 -27.45599 -25.84931 -25.22607 -24.23877 -23.04238 -21.14313 -20.44270 -19.66599 -19.10330 -18.37445 -17.08898 -16.98033 -16.71001 -16.62602 -16.04468 -15.80307 -15.62112 -15.36795 -15.31847 -15.06956 -14.58442 -14.42015 -14.21288 -14.13013 -13.89455 -13.70120 -13.62504 -12.99535 -12.91221 -12.79793 -12.69093 -12.64528 -12.50411 -12.42341 -12.32372 -12.12870 -12.06379 -11.90492 -11.77176 -11.63983 -11.45383 -11.38707 -11.13910 -10.89498 -10.70029 -9.63202 -9.21947 -9.07971 -8.38791 -5.31894 1.58836 1.61870 1.68182 1.84858 1.90732 2.71385 2.95341 3.40052 3.47329 3.62895 3.70258 3.79274 3.94271 4.00191 4.11946 4.12306 4.18734 4.20930 4.25606 4.35405 4.41030 4.42631 4.50405 4.58457 4.60468 4.67152 4.71818 4.75866 4.78174 4.78736 4.83869 4.91473 4.97569 5.00852 5.05561 5.07593 5.09480 5.13425 5.17558 5.26406 5.31474 5.37532 5.46774 5.58188 5.59563 5.96916 6.14124 6.42846 6.52161 7.11833 7.20419 8.02561 8.13234 9.13641 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.020742 B = 0.002778 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.613003 B =10075.908053 C =10845.185899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.073 3.927 3 C -0.184 4.184 4 N -0.536 5.536 5 C 0.019 3.981 6 C 0.038 3.962 7 C 0.514 3.486 8 O -0.563 6.563 9 N -0.606 5.606 10 C 0.113 3.887 11 C -0.121 4.121 12 C -0.078 4.078 13 H 0.067 0.933 14 C 0.164 3.836 15 N -0.753 5.753 16 C -0.335 4.335 17 H 0.061 0.939 18 C -0.102 4.102 19 N -0.973 5.973 20 Si 1.126 2.874 21 H -0.291 1.291 22 H -0.280 1.280 23 H -0.279 1.279 24 C -0.090 4.090 25 H 0.087 0.913 26 C -0.138 4.138 27 C 0.122 3.878 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.052 0.948 31 H 0.085 0.915 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.033 0.967 36 H 0.076 0.924 37 H 0.061 0.939 38 H 0.082 0.918 39 H 0.114 0.886 40 H 0.081 0.919 41 H 0.105 0.895 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.018 0.982 45 H 0.011 0.989 46 H 0.363 0.637 47 H 0.246 0.754 48 H 0.050 0.950 49 H 0.055 0.945 50 H 0.049 0.951 51 H 0.077 0.923 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.563 7.883 3.537 23.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.035 4.035 3 C -0.243 4.243 4 N -0.260 5.260 5 C -0.128 4.128 6 C -0.092 4.092 7 C 0.303 3.697 8 O -0.441 6.441 9 N -0.339 5.339 10 C -0.009 4.009 11 C -0.160 4.160 12 C -0.097 4.097 13 H 0.086 0.914 14 C 0.038 3.962 15 N -0.398 5.398 16 C -0.467 4.467 17 H 0.079 0.921 18 C -0.293 4.293 19 N -0.622 5.622 20 Si 0.950 3.050 21 H -0.217 1.217 22 H -0.206 1.206 23 H -0.205 1.205 24 C -0.109 4.109 25 H 0.106 0.894 26 C -0.195 4.195 27 C 0.000 4.000 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.071 0.929 31 H 0.103 0.897 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.051 0.949 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.132 0.868 40 H 0.099 0.901 41 H 0.123 0.877 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.036 0.964 45 H 0.029 0.971 46 H 0.196 0.804 47 H 0.056 0.944 48 H 0.069 0.931 49 H 0.074 0.926 50 H 0.068 0.932 51 H 0.095 0.905 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -20.832 6.889 3.099 22.159 hybrid contribution -0.694 0.850 0.902 1.420 sum -21.525 7.739 4.001 23.222 Atomic orbital electron populations 1.21840 0.93489 1.02115 1.02442 1.21847 0.96565 0.92880 0.92215 1.22460 1.01466 0.97338 1.03052 1.61895 1.08473 1.52313 1.03314 1.22506 1.01458 0.96310 0.92552 1.22045 0.90085 0.98781 0.98323 1.20931 0.81412 0.81856 0.85472 1.90629 1.52401 1.53233 1.47884 1.48158 1.05854 1.47299 1.32631 1.21855 0.90221 0.94889 0.93941 1.21855 0.98975 0.97553 0.97572 1.21186 0.95248 0.96409 0.96862 0.91445 1.20765 0.87061 0.94535 0.93818 1.42552 1.24838 1.05037 1.67372 1.20364 1.03571 0.91471 1.31287 0.92108 1.27131 1.01876 0.98862 1.01448 1.70994 1.37879 1.04183 1.49095 0.82650 0.73648 0.72925 0.75728 1.21727 1.20607 1.20504 1.21388 0.94768 0.96514 0.98268 0.89434 1.21776 0.99180 0.99153 0.99378 1.21577 0.98455 0.90951 0.89059 0.92409 0.90667 0.92855 0.89660 0.92363 0.92459 0.90766 0.94864 0.90552 0.92032 0.90063 0.86843 0.90071 0.87692 0.91938 0.91765 0.96429 0.97136 0.80433 0.94400 0.93067 0.92612 0.93167 0.90487 0.89798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.00 71.98 0.65 -1.19 16 2 C 0.07 1.05 2.96 44.92 0.13 1.18 16 3 C -0.18 -2.15 8.50 71.98 0.61 -1.54 16 4 N -0.54 -10.38 4.49 -901.61 -4.05 -14.43 16 5 C 0.02 0.37 8.40 127.69 1.07 1.44 16 6 C 0.04 0.70 3.23 85.56 0.28 0.98 16 7 C 0.51 12.45 7.42 87.66 0.65 13.10 16 8 O -0.56 -17.54 13.72 -3.03 -0.04 -17.58 16 9 N -0.61 -13.49 2.41 -818.96 -1.97 -15.46 16 10 C 0.11 2.26 6.34 86.36 0.55 2.81 16 11 C -0.12 -3.27 4.91 30.67 0.15 -3.12 16 12 C -0.08 -2.32 1.96 -10.77 -0.02 -2.34 16 13 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 14 C 0.16 6.50 5.18 86.38 0.45 6.95 16 15 N -0.75 -37.46 5.32 -343.47 -1.83 -39.29 16 16 C -0.34 -18.94 9.99 84.03 0.84 -18.10 16 17 H 0.06 3.39 7.83 -2.91 -0.02 3.37 16 18 C -0.10 -5.87 5.50 84.86 0.47 -5.41 16 19 N -0.97 -59.96 13.70 21.65 0.30 -59.67 16 20 Si 1.13 51.74 29.92 68.60 2.05 53.79 16 21 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 22 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 23 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 24 C -0.09 -2.24 2.72 -10.73 -0.03 -2.27 16 25 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 26 C -0.14 -3.58 8.38 71.98 0.60 -2.97 16 27 C 0.12 2.81 5.82 86.35 0.50 3.32 16 28 H 0.06 0.74 6.34 -2.39 -0.02 0.72 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.09 1.20 8.03 -2.38 -0.02 1.18 16 32 H 0.06 0.70 6.47 -2.38 -0.02 0.69 16 33 H 0.06 0.66 6.75 -2.39 -0.02 0.65 16 34 H 0.07 0.71 8.14 -2.39 -0.02 0.70 16 35 H 0.03 0.54 6.51 -2.39 -0.02 0.53 16 36 H 0.08 1.31 6.13 -2.39 -0.01 1.30 16 37 H 0.06 1.51 5.88 -2.38 -0.01 1.49 16 38 H 0.08 1.20 6.74 -2.39 -0.02 1.18 16 39 H 0.11 1.82 7.55 -2.39 -0.02 1.80 16 40 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.10 1.60 5.93 -2.39 -0.01 1.58 16 42 H 0.06 1.97 7.15 -2.38 -0.02 1.95 16 43 H 0.06 1.80 6.34 -2.38 -0.02 1.79 16 44 H 0.02 0.73 6.74 -2.39 -0.02 0.71 16 45 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 46 H 0.36 18.31 5.68 -92.71 -0.53 17.78 16 47 H 0.25 14.91 6.77 -92.71 -0.63 14.28 16 48 H 0.05 1.42 6.58 -2.39 -0.02 1.40 16 49 H 0.05 1.37 8.14 -2.38 -0.02 1.36 16 50 H 0.05 1.35 5.97 -2.39 -0.01 1.34 16 51 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 52 H 0.08 2.11 7.01 -2.39 -0.02 2.09 16 Total: -1.00 -70.15 380.88 1.88 -68.27 By element: Atomic # 1 Polarization: 31.02 SS G_CDS: 0.52 Total: 31.54 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: 6.90 Total: -7.17 kcal Atomic # 7 Polarization: -121.30 SS G_CDS: -7.55 Total: -128.85 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -0.04 Total: -17.58 kcal Atomic # 14 Polarization: 51.74 SS G_CDS: 2.05 Total: 53.79 kcal Total: -70.15 1.88 -68.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185761378.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.765 kcal (2) G-P(sol) polarization free energy of solvation -70.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.45 seconds