Wall clock time and date at job start Fri Apr 10 2020 22:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99809 * 2 1 4 4 H 1.48501 * 109.47223 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.47254 * 299.99888 * 3 2 1 6 6 H 1.48498 * 109.47359 * 59.99941 * 3 2 1 7 7 C 1.37871 * 120.00244 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00369 * 179.97438 * 7 2 1 9 9 S 1.76205 * 119.99666 * 0.02562 * 7 2 1 10 10 O 1.42100 * 106.40356 * 66.46373 * 9 7 2 11 11 O 1.42104 * 106.40186 * 293.53789 * 9 7 2 12 12 N 1.65603 * 107.21439 * 180.02562 * 9 7 2 13 13 C 1.31499 * 119.99983 * 180.02562 * 12 9 7 14 14 C 1.46886 * 121.33259 * 359.97438 * 13 12 9 15 15 C 1.34414 * 119.36055 * 180.02562 * 14 13 12 16 16 N 1.36031 * 122.52226 * 359.97311 * 15 14 13 17 17 H 0.96996 * 118.79661 * 180.02562 * 16 15 14 18 18 C 1.38062 * 122.40672 * 0.04981 * 16 15 14 19 19 C 1.39171 * 120.75428 * 179.97438 * 18 16 15 20 20 C 1.37800 * 119.92937 * 179.97438 * 19 18 16 21 21 C 1.38805 * 120.66338 * 0.02562 * 20 19 18 22 22 Cl 1.73603 * 119.86788 * 180.02562 * 21 20 19 23 23 C 1.37952 * 120.26221 * 359.97438 * 21 20 19 24 24 C 1.39221 * 119.58407 * 0.04235 * 23 21 20 25 25 H 0.97007 * 120.00213 * 0.02562 * 1 2 3 26 26 H 1.08003 * 120.31903 * 359.74503 * 14 13 12 27 27 H 1.08004 * 118.74162 * 179.97438 * 15 14 13 28 28 H 1.07994 * 120.03150 * 359.95631 * 19 18 16 29 29 H 1.07999 * 119.67110 * 179.97438 * 20 19 18 30 30 H 1.07997 * 120.21099 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 16 1.1235 -2.7199 0.0005 10 8 0.4519 -2.7956 -1.2495 11 8 0.4509 -2.7949 1.2501 12 7 2.2483 -3.9353 0.0019 13 6 1.8591 -5.1914 0.0017 14 6 0.4346 -5.5497 0.0007 15 6 0.0812 -6.8465 0.0010 16 7 0.9956 -7.8537 0.0017 17 1 0.6803 -8.7710 0.0015 18 6 2.3560 -7.6180 0.0031 19 6 3.2613 -8.6750 0.0042 20 6 4.6156 -8.4203 0.0050 21 6 5.0905 -7.1160 0.0053 22 17 6.8009 -6.8188 0.0057 23 6 4.2088 -6.0550 0.0042 24 6 2.8384 -6.3002 0.0037 25 1 -0.4851 0.8401 -0.0004 26 1 -0.3215 -4.7785 0.0044 27 1 -0.9690 -7.0986 0.0008 28 1 2.9028 -9.6937 0.0047 29 1 5.3144 -9.2437 0.0063 30 1 4.5793 -5.0406 0.0040 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192935400.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:40:59 Heat of formation + Delta-G solvation = -63.089362 kcal Electronic energy + Delta-G solvation = -20617.371262 eV Core-core repulsion = 17142.878139 eV Total energy + Delta-G solvation = -3474.493123 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 312.012 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.85816 -38.65382 -37.29645 -37.14860 -37.00913 -36.08751 -35.19590 -32.32856 -31.85864 -30.38039 -28.37107 -25.24580 -24.63465 -23.39900 -20.91720 -20.14111 -19.36128 -19.01612 -18.47167 -17.85186 -17.16835 -16.34655 -16.31212 -15.81607 -15.72148 -15.52302 -15.31193 -14.72537 -14.39340 -14.01273 -13.95235 -13.48601 -13.37508 -13.23453 -13.03229 -12.92201 -12.58960 -12.50845 -12.41136 -12.31807 -12.22022 -11.89475 -11.32291 -10.94967 -10.47022 -10.25716 -10.14319 -8.85736 -8.75050 -7.57644 -0.58251 -0.25095 0.42157 0.54726 1.13089 1.25783 1.27558 1.47356 1.60406 1.81741 2.17371 2.48343 2.64969 2.95308 3.24849 3.46968 3.55835 3.80911 3.89158 3.98392 4.10790 4.35463 4.51954 4.71056 4.77519 4.79507 4.91260 5.06959 5.15088 5.17693 5.42786 5.74609 5.76900 6.09947 6.35894 6.65798 8.14699 Molecular weight = 312.01amu Principal moments of inertia in cm(-1) A = 0.016614 B = 0.004623 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.928406 B = 6055.073932 C = 7564.173636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.062 3.938 3 Si 1.002 2.998 4 H -0.251 1.251 5 H -0.248 1.248 6 H -0.248 1.248 7 C -1.028 5.028 8 H 0.112 0.888 9 S 2.658 3.342 10 O -1.062 7.062 11 O -1.062 7.062 12 N -1.002 6.002 13 C 0.356 3.644 14 C -0.378 4.378 15 C 0.245 3.755 16 N -0.583 5.583 17 H 0.452 0.548 18 C 0.194 3.806 19 C -0.127 4.127 20 C -0.036 4.036 21 C -0.078 4.078 22 Cl -0.066 7.066 23 C -0.040 4.040 24 C -0.133 4.133 25 H 0.301 0.699 26 H 0.109 0.891 27 H 0.233 0.767 28 H 0.205 0.795 29 H 0.184 0.816 30 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.800 -26.240 0.012 27.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.150 4.150 3 Si 0.817 3.183 4 H -0.174 1.174 5 H -0.172 1.172 6 H -0.172 1.172 7 C -1.162 5.162 8 H 0.130 0.870 9 S 2.763 3.237 10 O -1.051 7.051 11 O -1.051 7.051 12 N -0.842 5.842 13 C 0.188 3.812 14 C -0.409 4.409 15 C 0.112 3.888 16 N -0.193 5.193 17 H 0.296 0.704 18 C 0.088 3.912 19 C -0.147 4.147 20 C -0.056 4.056 21 C -0.105 4.105 22 Cl -0.037 7.037 23 C -0.061 4.061 24 C -0.140 4.140 25 H 0.112 0.888 26 H 0.127 0.873 27 H 0.249 0.751 28 H 0.222 0.778 29 H 0.201 0.799 30 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.500 -25.587 0.012 26.400 hybrid contribution -0.092 1.878 -0.001 1.880 sum 6.408 -23.709 0.011 24.560 Atomic orbital electron populations 1.70005 1.08811 1.32437 1.41290 1.26264 0.95727 1.05747 0.87289 0.84978 0.79119 0.73969 0.80187 1.17391 1.17203 1.17195 1.30460 1.06791 1.11852 1.67113 0.86997 1.01758 0.72885 0.76805 0.72275 1.93271 1.75813 1.89052 1.46973 1.93272 1.75786 1.89055 1.47002 1.74418 1.57129 1.12025 1.40583 1.21464 0.91994 0.89761 0.78008 1.22679 0.94453 0.99707 1.24048 1.21959 0.97200 0.85388 0.84256 1.41448 1.02082 1.11046 1.64756 0.70410 1.18129 0.85041 0.92266 0.95728 1.21146 0.90489 0.99031 1.04058 1.21466 0.96507 0.94520 0.93125 1.20908 0.85061 0.95030 1.09546 1.98375 1.11605 1.96584 1.97115 1.20980 0.91091 1.00034 0.93952 1.18505 0.92733 0.90501 1.12273 0.88842 0.87323 0.75092 0.77765 0.79886 0.85704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -59.19 13.19 21.44 0.28 -58.90 16 2 C 0.06 3.91 5.46 84.65 0.46 4.37 16 3 Si 1.00 46.59 29.54 68.60 2.03 48.61 16 4 H -0.25 -11.13 7.11 99.48 0.71 -10.42 16 5 H -0.25 -10.57 7.11 99.48 0.71 -9.86 16 6 H -0.25 -10.56 7.11 99.48 0.71 -9.86 16 7 C -1.03 -68.76 9.75 67.73 0.66 -68.10 16 8 H 0.11 7.05 7.81 -2.91 -0.02 7.03 16 9 S 2.66 175.61 3.54 -56.49 -0.20 175.41 16 10 O -1.06 -74.36 17.27 -128.00 -2.21 -76.57 16 11 O -1.06 -74.37 17.26 -128.00 -2.21 -76.58 16 12 N -1.00 -55.66 10.35 -44.52 -0.46 -56.12 16 13 C 0.36 15.82 6.95 44.03 0.31 16.12 16 14 C -0.38 -14.51 8.99 23.66 0.21 -14.30 16 15 C 0.24 4.64 11.06 83.17 0.92 5.56 16 16 N -0.58 -6.43 5.31 -188.03 -1.00 -7.43 16 17 H 0.45 -0.67 8.76 -92.71 -0.81 -1.49 16 18 C 0.19 3.43 6.66 38.90 0.26 3.69 16 19 C -0.13 -1.05 9.88 22.39 0.22 -0.83 16 20 C -0.04 -0.42 9.79 22.30 0.22 -0.20 16 21 C -0.08 -1.66 6.32 22.34 0.14 -1.52 16 22 Cl -0.07 -1.38 28.95 -2.72 -0.08 -1.46 16 23 C -0.04 -1.23 9.42 22.44 0.21 -1.02 16 24 C -0.13 -4.20 5.89 -19.96 -0.12 -4.32 16 25 H 0.30 17.53 8.31 -92.70 -0.77 16.76 16 26 H 0.11 5.13 6.12 -2.91 -0.02 5.12 16 27 H 0.23 1.58 8.06 -2.91 -0.02 1.56 16 28 H 0.21 -0.68 8.06 -2.91 -0.02 -0.70 16 29 H 0.18 0.71 8.06 -2.91 -0.02 0.68 16 30 H 0.12 4.62 7.72 -2.91 -0.02 4.60 16 Total: -1.00 -110.22 299.79 0.05 -110.17 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: 0.41 Total: 3.42 kcal Atomic # 6 Polarization: -64.04 SS G_CDS: 3.50 Total: -60.54 kcal Atomic # 7 Polarization: -121.28 SS G_CDS: -1.18 Total: -122.46 kcal Atomic # 8 Polarization: -148.73 SS G_CDS: -4.42 Total: -153.15 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.61 kcal Atomic # 16 Polarization: 175.61 SS G_CDS: -0.20 Total: 175.41 kcal Atomic # 17 Polarization: -1.38 SS G_CDS: -0.08 Total: -1.46 kcal Total: -110.22 0.05 -110.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192935400.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.079 kcal (2) G-P(sol) polarization free energy of solvation -110.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -110.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds