Wall clock time and date at job start Fri Apr 10 2020 22:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 120.00393 * 2 1 4 4 H 1.48493 * 109.47334 * 240.00300 * 3 2 1 5 5 H 1.48498 * 109.46626 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47027 * 120.00077 * 3 2 1 7 7 C 1.37880 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00239 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99652 * 359.97438 * 7 2 1 10 10 O 1.42097 * 106.40433 * 66.46594 * 9 7 2 11 11 O 1.42099 * 106.40631 * 293.54061 * 9 7 2 12 12 N 1.65608 * 107.21648 * 180.02562 * 9 7 2 13 13 C 1.39489 * 119.99576 * 66.56064 * 12 9 7 14 14 C 1.38111 * 120.79330 * 68.76251 * 13 12 9 15 15 Cl 1.73604 * 119.22405 * 359.97438 * 14 13 12 16 16 N 1.32530 * 121.55274 * 179.97438 * 14 13 12 17 17 C 1.31265 * 122.85775 * 0.02562 * 16 14 13 18 18 C 1.40363 * 120.22141 * 359.97438 * 17 16 14 19 19 C 1.40438 * 121.96848 * 180.28337 * 18 17 16 20 20 C 1.36158 * 119.52476 * 180.22276 * 19 18 17 21 21 C 1.39368 * 121.08431 * 359.49130 * 20 19 18 22 22 C 1.36247 * 120.99457 * 0.25712 * 21 20 19 23 23 C 1.40105 * 119.49693 * 0.02562 * 22 21 20 24 24 H 0.97009 * 119.99540 * 359.97438 * 1 2 3 25 25 H 0.96997 * 120.00107 * 246.55252 * 12 9 7 26 26 H 1.08002 * 119.88625 * 179.97438 * 17 16 14 27 27 H 1.07999 * 120.23779 * 359.97438 * 19 18 17 28 28 H 1.08000 * 119.45525 * 179.72705 * 20 19 18 29 29 H 1.08000 * 119.50277 * 180.27748 * 21 20 19 30 30 H 1.08001 * 120.25619 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 16 1.1233 -2.7200 -0.0005 10 8 0.4508 -2.7950 -1.2500 11 8 0.4517 -2.7955 1.2494 12 7 2.2481 -3.9355 -0.0005 13 6 3.0744 -4.1210 1.1078 14 6 2.5586 -4.5728 2.3067 15 17 0.8598 -4.9104 2.4249 16 7 3.3298 -4.7548 3.3689 17 6 4.6216 -4.5217 3.3595 18 6 5.2476 -4.0595 2.1913 19 6 6.6275 -3.8040 2.1384 20 6 7.1824 -3.3521 0.9800 21 6 6.4050 -3.1486 -0.1587 22 6 5.0643 -3.3910 -0.1455 23 6 4.4580 -3.8512 1.0308 24 1 -0.4850 0.8402 0.0004 25 1 2.3322 -4.5185 -0.7712 26 1 5.2047 -4.6862 4.2536 27 1 7.2435 -3.9608 3.0115 28 1 8.2429 -3.1517 0.9419 29 1 6.8724 -2.7938 -1.0653 30 1 4.4734 -3.2296 -1.0349 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192935668.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:41:08 Heat of formation + Delta-G solvation = -31.055836 kcal Electronic energy + Delta-G solvation = -21542.769499 eV Core-core repulsion = 18069.665454 eV Total energy + Delta-G solvation = -3473.104045 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 312.012 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.76447 -37.44907 -35.87767 -35.38876 -35.13810 -34.00343 -33.13029 -31.35767 -30.78201 -28.49070 -26.17800 -24.08557 -23.42743 -21.86158 -19.19797 -18.24009 -17.93054 -17.50534 -16.76531 -16.36604 -15.74995 -15.01909 -14.91679 -14.23327 -14.14771 -14.01132 -13.72147 -13.48947 -13.07625 -12.44810 -12.09542 -11.97719 -11.42598 -11.26206 -11.23614 -11.12144 -11.02273 -10.70593 -10.64906 -10.26486 -10.15136 -9.89059 -9.51686 -9.27201 -9.17426 -8.88988 -8.71979 -7.67046 -6.73996 -5.36908 0.35581 0.90303 1.85871 2.22104 2.42411 3.04900 3.05707 3.09963 3.15159 3.99527 4.06661 4.34910 4.61144 4.61462 4.73191 4.81602 4.82832 5.10816 5.16951 5.29597 5.60460 5.73580 5.76364 5.91435 5.95306 6.23171 6.36279 6.47537 6.52394 6.71200 6.83209 7.27379 7.61766 7.89972 7.91733 8.84392 10.19956 Molecular weight = 312.01amu Principal moments of inertia in cm(-1) A = 0.012581 B = 0.007903 C = 0.005775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.113084 B = 3542.251626 C = 4847.049816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.136 3.864 3 Si 0.918 3.082 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.264 1.264 7 C -1.017 5.017 8 H 0.100 0.900 9 S 2.696 3.304 10 O -0.997 6.997 11 O -0.974 6.974 12 N -1.072 6.072 13 C 0.151 3.849 14 C 0.149 3.851 15 Cl 0.008 6.992 16 N -0.470 5.470 17 C 0.148 3.852 18 C -0.107 4.107 19 C -0.090 4.090 20 C -0.118 4.118 21 C -0.104 4.104 22 C -0.092 4.092 23 C -0.021 4.021 24 H 0.292 0.708 25 H 0.414 0.586 26 H 0.170 0.830 27 H 0.134 0.866 28 H 0.125 0.875 29 H 0.128 0.872 30 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.048 -7.246 2.495 16.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.082 4.082 3 Si 0.742 3.258 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.188 1.188 7 C -1.151 5.151 8 H 0.119 0.881 9 S 2.797 3.203 10 O -0.987 6.987 11 O -0.964 6.964 12 N -0.820 5.820 13 C 0.051 3.949 14 C -0.006 4.006 15 Cl 0.037 6.963 16 N -0.180 5.180 17 C -0.024 4.024 18 C -0.110 4.110 19 C -0.110 4.110 20 C -0.136 4.136 21 C -0.123 4.123 22 C -0.110 4.110 23 C -0.028 4.028 24 H 0.102 0.898 25 H 0.249 0.751 26 H 0.187 0.813 27 H 0.152 0.848 28 H 0.143 0.857 29 H 0.145 0.855 30 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 12.131 -7.535 3.293 14.656 hybrid contribution 1.266 1.385 -1.096 2.173 sum 13.397 -6.150 2.197 14.904 Atomic orbital electron populations 1.69879 1.06715 1.30892 1.39683 1.24693 0.94446 1.00631 0.88460 0.86235 0.79985 0.79792 0.79832 1.18784 1.19998 1.18829 1.30433 1.05919 1.11469 1.67273 0.88139 1.01341 0.72269 0.73155 0.73582 1.93392 1.72123 1.87334 1.45879 1.93513 1.71859 1.86679 1.44374 1.53983 1.54730 1.50810 1.22515 1.17573 0.89545 0.99539 0.88265 1.21944 0.89515 0.98817 0.90333 1.98446 1.07330 1.92455 1.98066 1.66752 1.06343 1.16252 1.28626 1.22989 0.89144 0.93697 0.96552 1.18983 0.95051 1.02596 0.94328 1.20905 0.92838 0.98652 0.98592 1.20907 1.00161 0.99437 0.93080 1.20989 0.93817 0.98813 0.98693 1.20997 0.95063 0.97558 0.97411 1.18307 0.92164 0.97841 0.94520 0.89760 0.75070 0.81258 0.84850 0.85674 0.85451 0.84429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.56 13.19 55.43 0.73 -23.83 16 2 C 0.14 3.77 5.46 -17.82 -0.10 3.67 16 3 Si 0.92 20.56 29.54 -169.99 -5.02 15.53 16 4 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.26 -5.77 7.11 56.52 0.40 -5.37 16 7 C -1.02 -27.65 9.71 30.60 0.30 -27.35 16 8 H 0.10 2.52 7.81 -52.49 -0.41 2.11 16 9 S 2.70 70.39 4.92 -107.50 -0.53 69.86 16 10 O -1.00 -28.62 18.02 -57.17 -1.03 -29.65 16 11 O -0.97 -27.34 13.65 -57.17 -0.78 -28.12 16 12 N -1.07 -21.49 4.56 32.67 0.15 -21.34 16 13 C 0.15 2.91 5.95 -83.31 -0.50 2.42 16 14 C 0.15 2.97 7.02 -17.30 -0.12 2.85 16 15 Cl 0.01 0.17 24.84 -51.86 -1.29 -1.12 16 16 N -0.47 -8.31 10.26 -9.89 -0.10 -8.41 16 17 C 0.15 2.05 11.03 -16.99 -0.19 1.86 16 18 C -0.11 -1.50 5.74 -106.87 -0.61 -2.11 16 19 C -0.09 -0.95 9.81 -39.50 -0.39 -1.34 16 20 C -0.12 -1.20 9.94 -39.91 -0.40 -1.60 16 21 C -0.10 -1.22 9.95 -39.88 -0.40 -1.61 16 22 C -0.09 -1.36 9.59 -39.60 -0.38 -1.74 16 23 C -0.02 -0.34 5.76 -106.68 -0.61 -0.96 16 24 H 0.29 7.69 8.31 -40.82 -0.34 7.35 16 25 H 0.41 6.85 8.95 -34.48 -0.31 6.54 16 26 H 0.17 1.56 8.06 -52.49 -0.42 1.13 16 27 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 28 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 29 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 30 H 0.14 2.00 7.65 -52.49 -0.40 1.60 16 LS Contribution 295.19 15.07 4.45 4.45 Total: -1.00 -35.41 295.19 -8.76 -44.18 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -1.95 Total: 4.37 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: -3.39 Total: -25.91 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: 0.78 Total: -53.58 kcal Atomic # 8 Polarization: -55.96 SS G_CDS: -1.81 Total: -57.77 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 70.39 SS G_CDS: -0.53 Total: 69.86 kcal Atomic # 17 Polarization: 0.17 SS G_CDS: -1.29 Total: -1.12 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -35.41 -8.76 -44.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192935668.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.120 kcal (2) G-P(sol) polarization free energy of solvation -35.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds