Wall clock time and date at job start Fri Apr 10 2020 22:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 120.00393 * 2 1 4 4 H 1.48493 * 109.47334 * 240.00300 * 3 2 1 5 5 H 1.48498 * 109.46626 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47027 * 120.00077 * 3 2 1 7 7 C 1.37880 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00239 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99652 * 359.97438 * 7 2 1 10 10 O 1.42097 * 106.40433 * 66.46594 * 9 7 2 11 11 O 1.42099 * 106.40631 * 293.54061 * 9 7 2 12 12 N 1.65608 * 107.21648 * 180.02562 * 9 7 2 13 13 C 1.39489 * 119.99576 * 66.56064 * 12 9 7 14 14 C 1.38111 * 120.79330 * 68.76251 * 13 12 9 15 15 Cl 1.73604 * 119.22405 * 359.97438 * 14 13 12 16 16 N 1.32530 * 121.55274 * 179.97438 * 14 13 12 17 17 C 1.31265 * 122.85775 * 0.02562 * 16 14 13 18 18 C 1.40363 * 120.22141 * 359.97438 * 17 16 14 19 19 C 1.40438 * 121.96848 * 180.28337 * 18 17 16 20 20 C 1.36158 * 119.52476 * 180.22276 * 19 18 17 21 21 C 1.39368 * 121.08431 * 359.49130 * 20 19 18 22 22 C 1.36247 * 120.99457 * 0.25712 * 21 20 19 23 23 C 1.40105 * 119.49693 * 0.02562 * 22 21 20 24 24 H 0.97009 * 119.99540 * 359.97438 * 1 2 3 25 25 H 0.96997 * 120.00107 * 246.55252 * 12 9 7 26 26 H 1.08002 * 119.88625 * 179.97438 * 17 16 14 27 27 H 1.07999 * 120.23779 * 359.97438 * 19 18 17 28 28 H 1.08000 * 119.45525 * 179.72705 * 20 19 18 29 29 H 1.08000 * 119.50277 * 180.27748 * 21 20 19 30 30 H 1.08001 * 120.25619 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 16 1.1233 -2.7200 -0.0005 10 8 0.4508 -2.7950 -1.2500 11 8 0.4517 -2.7955 1.2494 12 7 2.2481 -3.9355 -0.0005 13 6 3.0744 -4.1210 1.1078 14 6 2.5586 -4.5728 2.3067 15 17 0.8598 -4.9104 2.4249 16 7 3.3298 -4.7548 3.3689 17 6 4.6216 -4.5217 3.3595 18 6 5.2476 -4.0595 2.1913 19 6 6.6275 -3.8040 2.1384 20 6 7.1824 -3.3521 0.9800 21 6 6.4050 -3.1486 -0.1587 22 6 5.0643 -3.3910 -0.1455 23 6 4.4580 -3.8512 1.0308 24 1 -0.4850 0.8402 0.0004 25 1 2.3322 -4.5185 -0.7712 26 1 5.2047 -4.6862 4.2536 27 1 7.2435 -3.9608 3.0115 28 1 8.2429 -3.1517 0.9419 29 1 6.8724 -2.7938 -1.0653 30 1 4.4734 -3.2296 -1.0349 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192935668.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:41:06 Heat of formation + Delta-G solvation = -58.266291 kcal Electronic energy + Delta-G solvation = -21543.949433 eV Core-core repulsion = 18069.665454 eV Total energy + Delta-G solvation = -3474.283979 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 312.012 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -41.90630 -38.58236 -37.46196 -37.20000 -36.72244 -36.13195 -35.20315 -32.43476 -31.88631 -29.74890 -28.29098 -25.19276 -24.55770 -22.97375 -21.15939 -19.78799 -19.19157 -18.86989 -18.34746 -18.15873 -17.09090 -16.80655 -16.03101 -15.90212 -15.61978 -15.44093 -15.13498 -14.71436 -14.18015 -14.04670 -13.63581 -13.39615 -13.07677 -13.04215 -12.86391 -12.80376 -12.48931 -12.36525 -12.20514 -12.13631 -11.71468 -11.47547 -11.24981 -11.06511 -10.68355 -10.35650 -9.99535 -8.92903 -8.75366 -7.51334 -0.78049 -0.20367 0.21468 0.89580 1.01131 1.29543 1.32207 1.44831 1.97602 2.16225 2.55517 2.71863 3.00277 3.49847 3.59452 3.67199 3.73375 3.84022 3.96412 4.34307 4.35638 4.43165 4.58097 4.72707 4.88433 4.98448 5.09799 5.23530 5.42547 5.51695 5.53565 5.84433 5.94062 6.11019 6.69771 6.74561 8.17942 Molecular weight = 312.01amu Principal moments of inertia in cm(-1) A = 0.012581 B = 0.007903 C = 0.005775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.113084 B = 3542.251626 C = 4847.049816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.074 3.926 3 Si 0.984 3.016 4 H -0.245 1.245 5 H -0.263 1.263 6 H -0.253 1.253 7 C -1.034 5.034 8 H 0.115 0.885 9 S 2.703 3.297 10 O -1.037 7.037 11 O -1.003 7.003 12 N -1.058 6.058 13 C 0.117 3.883 14 C 0.128 3.872 15 Cl -0.025 7.025 16 N -0.502 5.502 17 C 0.171 3.829 18 C -0.122 4.122 19 C -0.073 4.073 20 C -0.113 4.113 21 C -0.085 4.085 22 C -0.132 4.132 23 C -0.037 4.037 24 H 0.299 0.701 25 H 0.425 0.575 26 H 0.223 0.777 27 H 0.182 0.818 28 H 0.170 0.830 29 H 0.155 0.845 30 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.172 -6.220 3.409 20.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.802 3.198 4 H -0.169 1.169 5 H -0.187 1.187 6 H -0.177 1.177 7 C -1.167 5.167 8 H 0.133 0.867 9 S 2.805 3.195 10 O -1.027 7.027 11 O -0.993 6.993 12 N -0.810 5.810 13 C 0.017 3.983 14 C -0.025 4.025 15 Cl 0.004 6.996 16 N -0.213 5.213 17 C -0.001 4.001 18 C -0.124 4.124 19 C -0.092 4.092 20 C -0.131 4.131 21 C -0.104 4.104 22 C -0.150 4.150 23 C -0.044 4.044 24 H 0.109 0.891 25 H 0.263 0.737 26 H 0.239 0.761 27 H 0.199 0.801 28 H 0.187 0.813 29 H 0.173 0.827 30 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 17.243 -6.537 4.189 18.910 hybrid contribution -0.019 0.975 -1.338 1.656 sum 17.224 -5.562 2.850 18.323 Atomic orbital electron populations 1.69981 1.08679 1.32366 1.41136 1.25948 0.95342 1.05078 0.87547 0.85249 0.78977 0.74748 0.80821 1.16860 1.18666 1.17704 1.30759 1.06796 1.12209 1.66967 0.86680 1.00787 0.72641 0.73684 0.72345 1.93324 1.73980 1.88163 1.47273 1.93472 1.73349 1.87314 1.45124 1.53124 1.54365 1.49775 1.23703 1.17795 0.90813 1.02158 0.87520 1.22000 0.88592 1.00436 0.91494 1.98417 1.10250 1.92789 1.98186 1.66762 1.08011 1.18510 1.27983 1.23949 0.87971 0.90004 0.98142 1.19359 0.96778 1.02930 0.93370 1.21453 0.91123 0.96131 1.00501 1.21450 1.02124 0.97628 0.91900 1.21453 0.92498 0.95852 1.00577 1.21048 0.96722 1.00464 0.96787 1.18513 0.91043 0.98428 0.96419 0.89094 0.73736 0.76058 0.80092 0.81285 0.82730 0.85740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.55 13.19 21.45 0.28 -53.27 16 2 C 0.07 4.16 5.46 84.66 0.46 4.62 16 3 Si 0.98 41.40 29.54 68.60 2.03 43.42 16 4 H -0.25 -9.51 7.11 99.48 0.71 -8.80 16 5 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 6 H -0.25 -10.12 7.11 99.48 0.71 -9.41 16 7 C -1.03 -57.45 9.71 67.74 0.66 -56.80 16 8 H 0.12 5.82 7.81 -2.91 -0.02 5.80 16 9 S 2.70 148.49 4.92 -56.49 -0.28 148.21 16 10 O -1.04 -62.98 18.02 -128.00 -2.31 -65.28 16 11 O -1.00 -59.58 13.65 -128.00 -1.75 -61.32 16 12 N -1.06 -44.80 4.56 -50.55 -0.23 -45.03 16 13 C 0.12 4.64 5.95 38.61 0.23 4.87 16 14 C 0.13 5.29 7.02 84.56 0.59 5.88 16 15 Cl -0.03 -1.13 24.84 -2.72 -0.07 -1.20 16 16 N -0.50 -17.52 10.26 -185.19 -1.90 -19.42 16 17 C 0.17 4.20 11.03 85.30 0.94 5.14 16 18 C -0.12 -3.01 5.74 -21.32 -0.12 -3.13 16 19 C -0.07 -1.09 9.81 22.32 0.22 -0.87 16 20 C -0.11 -1.59 9.94 22.06 0.22 -1.37 16 21 C -0.08 -1.64 9.95 22.08 0.22 -1.42 16 22 C -0.13 -3.71 9.59 22.26 0.21 -3.50 16 23 C -0.04 -1.18 5.76 -21.20 -0.12 -1.30 16 24 H 0.30 16.21 8.31 -92.70 -0.77 15.44 16 25 H 0.42 15.22 8.95 -96.74 -0.87 14.35 16 26 H 0.22 2.83 8.06 -2.91 -0.02 2.81 16 27 H 0.18 1.04 8.06 -2.91 -0.02 1.01 16 28 H 0.17 1.02 8.06 -2.91 -0.02 1.00 16 29 H 0.16 2.10 8.06 -2.91 -0.02 2.07 16 30 H 0.12 3.69 7.65 -2.91 -0.02 3.67 16 Total: -1.00 -83.16 295.19 -0.36 -83.52 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: 0.35 Total: 18.25 kcal Atomic # 6 Polarization: -51.40 SS G_CDS: 3.51 Total: -47.89 kcal Atomic # 7 Polarization: -115.87 SS G_CDS: -1.85 Total: -117.71 kcal Atomic # 8 Polarization: -122.55 SS G_CDS: -4.05 Total: -126.60 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.42 kcal Atomic # 16 Polarization: 148.49 SS G_CDS: -0.28 Total: 148.21 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -0.07 Total: -1.20 kcal Total: -83.16 -0.36 -83.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192935668.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.253 kcal (2) G-P(sol) polarization free energy of solvation -83.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds