Wall clock time and date at job start Fri Apr 10 2020 22:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99690 * 2 1 4 4 H 1.48504 * 109.47306 * 239.99555 * 3 2 1 5 5 H 1.48501 * 109.47230 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46864 * 119.99728 * 3 2 1 7 7 C 1.37876 * 120.00289 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00115 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00193 * 0.02562 * 7 2 1 10 10 O 1.42101 * 106.40284 * 71.35351 * 9 7 2 11 11 O 1.42100 * 106.39728 * 298.43713 * 9 7 2 12 12 N 1.65597 * 107.22215 * 184.89681 * 9 7 2 13 13 C 1.39714 * 120.00040 * 298.46209 * 12 9 7 14 14 C 1.40023 * 120.18563 * 313.82658 * 13 12 9 15 15 N 1.30977 * 121.62887 * 179.97438 * 14 13 12 16 16 C 1.33683 * 121.58930 * 359.95442 * 15 14 13 17 17 C 1.40591 * 120.91510 * 180.02562 * 16 15 14 18 18 C 1.36187 * 119.78030 * 180.02562 * 17 16 15 19 19 Cl 1.73600 * 119.47577 * 179.97438 * 18 17 16 20 20 C 1.39476 * 121.05077 * 359.97136 * 18 17 16 21 21 C 1.36105 * 120.83529 * 0.28484 * 20 18 17 22 22 C 1.40496 * 119.63705 * 359.49658 * 21 20 18 23 23 C 1.38164 * 120.19187 * 133.79871 * 13 12 9 24 24 H 0.96994 * 120.00684 * 0.02562 * 1 2 3 25 25 H 0.96997 * 119.99847 * 118.45521 * 12 9 7 26 26 H 1.08009 * 119.18958 * 359.97371 * 14 13 12 27 27 H 1.08004 * 120.10983 * 0.03953 * 17 16 15 28 28 H 1.08001 * 119.58600 * 179.97438 * 20 18 17 29 29 H 1.07998 * 120.18170 * 179.72182 * 21 20 18 30 30 H 1.08004 * 120.99088 * 0.02562 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 16 1.1237 -2.7200 0.0005 10 8 0.5461 -2.8499 -1.2913 11 8 0.3605 -2.7426 1.1990 12 7 2.2434 -3.9325 0.1363 13 6 3.2175 -4.0976 -0.8516 14 6 2.8596 -4.0691 -2.2050 15 7 3.7494 -4.2203 -3.1542 16 6 5.0436 -4.4085 -2.8772 17 6 5.9868 -4.5687 -3.9073 18 6 7.2995 -4.7595 -3.5989 19 17 8.4574 -4.9572 -4.8771 20 6 7.7284 -4.7987 -2.2723 21 6 6.8437 -4.6526 -1.2484 22 6 5.4824 -4.4493 -1.5302 23 6 4.5395 -4.2894 -0.4987 24 1 -0.4851 0.8399 -0.0004 25 1 2.2231 -4.5279 0.9017 26 1 1.8241 -3.9187 -2.4730 27 1 5.6715 -4.5403 -4.9399 28 1 8.7751 -4.9519 -2.0546 29 1 7.1867 -4.6892 -0.2250 30 1 4.8401 -4.3152 0.5383 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192938412.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:41:11 Heat of formation + Delta-G solvation = -69.012414 kcal Electronic energy + Delta-G solvation = -20607.731429 eV Core-core repulsion = 17132.981463 eV Total energy + Delta-G solvation = -3474.749966 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 312.012 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.92657 -38.92046 -37.60061 -37.28568 -36.29422 -36.19340 -35.22727 -33.61262 -31.33279 -29.74640 -28.31607 -25.49901 -24.35035 -23.28927 -21.23305 -20.01211 -19.55670 -18.73666 -18.30872 -17.84214 -17.08690 -16.69084 -16.16905 -15.88161 -15.68815 -15.56432 -15.38032 -14.77670 -14.17409 -14.04572 -13.91507 -13.47239 -13.22779 -13.06748 -13.04281 -12.83825 -12.62961 -12.45371 -12.35831 -12.19896 -12.01229 -11.99219 -11.27478 -11.16092 -10.85588 -10.51328 -9.63345 -9.12604 -8.79322 -7.54498 -0.75571 -0.41223 0.13631 0.87375 1.01487 1.31983 1.34089 1.46819 1.72500 2.15902 2.53188 2.67269 2.94660 3.26040 3.52390 3.55142 3.66841 3.84174 3.89585 4.03332 4.27150 4.32117 4.50463 4.64949 4.79029 4.88823 5.06911 5.12233 5.20911 5.28721 5.44282 5.60714 5.82062 6.14198 6.73300 6.78092 8.15760 Molecular weight = 312.01amu Principal moments of inertia in cm(-1) A = 0.019461 B = 0.004013 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.433085 B = 6975.212058 C = 7599.332045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.076 3.924 3 Si 0.985 3.015 4 H -0.257 1.257 5 H -0.261 1.261 6 H -0.246 1.246 7 C -1.036 5.036 8 H 0.117 0.883 9 S 2.713 3.287 10 O -1.026 7.026 11 O -1.024 7.024 12 N -1.051 6.051 13 C 0.103 3.897 14 C 0.101 3.899 15 N -0.476 5.476 16 C 0.096 3.904 17 C -0.096 4.096 18 C -0.016 4.016 19 Cl -0.057 7.057 20 C -0.108 4.108 21 C -0.068 4.068 22 C -0.095 4.095 23 C -0.067 4.067 24 H 0.301 0.699 25 H 0.432 0.568 26 H 0.168 0.832 27 H 0.143 0.857 28 H 0.171 0.829 29 H 0.181 0.819 30 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.443 -8.670 -1.770 20.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.138 4.138 3 Si 0.803 3.197 4 H -0.182 1.182 5 H -0.185 1.185 6 H -0.170 1.170 7 C -1.170 5.170 8 H 0.135 0.865 9 S 2.815 3.185 10 O -1.016 7.016 11 O -1.014 7.014 12 N -0.801 5.801 13 C 0.004 3.996 14 C -0.073 4.073 15 N -0.184 5.184 16 C -0.026 4.026 17 C -0.115 4.115 18 C -0.045 4.045 19 Cl -0.028 7.028 20 C -0.126 4.126 21 C -0.086 4.086 22 C -0.098 4.098 23 C -0.097 4.097 24 H 0.111 0.889 25 H 0.270 0.730 26 H 0.185 0.815 27 H 0.161 0.839 28 H 0.188 0.812 29 H 0.198 0.802 30 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 17.162 -8.655 -2.968 19.449 hybrid contribution 0.284 0.817 0.841 1.206 sum 17.447 -7.838 -2.127 19.244 Atomic orbital electron populations 1.69952 1.08543 1.32587 1.40747 1.25898 0.95355 1.05022 0.87500 0.85232 0.78935 0.74887 0.80648 1.18157 1.18527 1.16951 1.30708 1.06940 1.12022 1.67284 0.86471 1.00372 0.72313 0.73729 0.72096 1.93296 1.77143 1.87596 1.43537 1.93349 1.70304 1.87967 1.49807 1.53279 1.46571 1.48680 1.31602 1.18519 0.90149 1.02140 0.88804 1.23843 1.00774 0.94338 0.88382 1.67962 1.01837 1.12519 1.36098 1.19082 0.90715 1.00114 0.92731 1.20653 0.90674 1.00623 0.99589 1.20688 0.89823 1.03197 0.90744 1.98382 1.58400 1.95599 1.50443 1.21129 1.02430 0.99850 0.89201 1.21334 0.89248 0.96286 1.01767 1.19035 0.96423 1.01791 0.92546 1.22078 0.89160 0.96886 1.01608 0.88883 0.73030 0.81523 0.83871 0.81166 0.80208 0.79723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.26 13.10 21.45 0.28 -50.98 16 2 C 0.08 4.12 5.46 84.65 0.46 4.58 16 3 Si 0.98 40.37 29.54 68.60 2.03 42.39 16 4 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 5 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 6 H -0.25 -9.33 7.11 99.48 0.71 -8.63 16 7 C -1.04 -54.93 9.61 67.73 0.65 -54.28 16 8 H 0.12 5.65 7.81 -2.91 -0.02 5.62 16 9 S 2.71 137.98 4.95 -56.49 -0.28 137.70 16 10 O -1.03 -57.39 15.15 -128.00 -1.94 -59.32 16 11 O -1.02 -57.86 17.91 -128.00 -2.29 -60.16 16 12 N -1.05 -38.64 5.77 -51.11 -0.29 -38.93 16 13 C 0.10 3.60 6.14 38.30 0.24 3.84 16 14 C 0.10 4.01 10.37 85.25 0.88 4.90 16 15 N -0.48 -17.79 10.32 -188.11 -1.94 -19.73 16 16 C 0.10 2.98 6.60 40.30 0.27 3.25 16 17 C -0.10 -2.48 9.72 22.37 0.22 -2.26 16 18 C -0.02 -0.32 6.27 22.09 0.14 -0.18 16 19 Cl -0.06 -1.02 28.91 -2.72 -0.08 -1.10 16 20 C -0.11 -1.70 9.72 22.07 0.21 -1.48 16 21 C -0.07 -1.12 9.77 22.32 0.22 -0.91 16 22 C -0.10 -2.42 5.74 -21.28 -0.12 -2.55 16 23 C -0.07 -1.77 9.86 22.84 0.23 -1.54 16 24 H 0.30 15.65 8.31 -92.71 -0.77 14.88 16 25 H 0.43 12.50 8.96 -96.75 -0.87 11.63 16 26 H 0.17 7.41 5.68 -2.91 -0.02 7.39 16 27 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 28 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 29 H 0.18 1.55 8.06 -2.91 -0.02 1.52 16 30 H 0.19 3.28 8.06 -2.91 -0.02 3.26 16 Total: -1.00 -74.07 299.22 -0.78 -74.85 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: 0.35 Total: 21.91 kcal Atomic # 6 Polarization: -50.02 SS G_CDS: 3.39 Total: -46.63 kcal Atomic # 7 Polarization: -107.68 SS G_CDS: -1.95 Total: -109.64 kcal Atomic # 8 Polarization: -115.25 SS G_CDS: -4.23 Total: -119.48 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 2.03 Total: 42.39 kcal Atomic # 16 Polarization: 137.98 SS G_CDS: -0.28 Total: 137.70 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -0.08 Total: -1.10 kcal Total: -74.07 -0.78 -74.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192938412.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.835 kcal (2) G-P(sol) polarization free energy of solvation -74.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds