Wall clock time and date at job start Fri Apr 10 2020 22:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86790 * 119.99903 * 2 1 4 4 H 1.48504 * 109.47296 * 240.00061 * 3 2 1 5 5 H 1.48498 * 109.47312 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47253 * 120.00130 * 3 2 1 7 7 C 1.37877 * 119.99727 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99597 * 179.72534 * 7 2 1 9 9 S 1.76198 * 120.00007 * 359.97438 * 7 2 1 10 10 O 1.42094 * 106.40521 * 293.26637 * 9 7 2 11 11 O 1.42101 * 106.40279 * 66.19330 * 9 7 2 12 12 N 1.65606 * 107.21755 * 179.72629 * 9 7 2 13 13 C 1.39420 * 119.99872 * 67.65784 * 12 9 7 14 14 C 1.37810 * 120.25337 * 327.65318 * 13 12 9 15 15 C 1.39163 * 120.82928 * 179.80431 * 14 13 12 16 16 C 1.36205 * 120.96656 * 0.46415 * 15 14 13 17 17 C 1.40417 * 119.91922 * 359.77950 * 16 15 14 18 18 C 1.40789 * 121.27931 * 179.97438 * 17 16 15 19 19 C 1.36659 * 118.15686 * 180.02562 * 18 17 16 20 20 Cl 1.73599 * 120.05519 * 180.02562 * 19 18 17 21 21 C 1.39461 * 119.89412 * 359.97438 * 19 18 17 22 22 N 1.31074 * 121.70279 * 0.02562 * 21 19 18 23 23 C 1.33562 * 121.35548 * 359.95736 * 22 21 19 24 24 H 0.96999 * 119.99971 * 0.02562 * 1 2 3 25 25 H 0.96995 * 120.00226 * 247.66175 * 12 9 7 26 26 H 1.08000 * 119.58606 * 0.02721 * 14 13 12 27 27 H 1.07998 * 119.51683 * 180.24195 * 15 14 13 28 28 H 1.08000 * 120.03473 * 179.81189 * 16 15 14 29 29 H 1.08005 * 120.91895 * 0.04255 * 18 17 16 30 30 H 1.07999 * 119.14498 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0050 9 16 1.1235 -2.7200 -0.0005 10 8 0.4570 -2.7985 1.2519 11 8 0.4458 -2.7920 -1.2475 12 7 2.2482 -3.9354 -0.0088 13 6 3.0636 -4.1382 1.1038 14 6 3.4518 -3.0706 1.8840 15 6 4.2621 -3.2598 2.9994 16 6 4.7006 -4.5023 3.3445 17 6 4.3309 -5.6151 2.5720 18 6 4.7681 -6.9120 2.9022 19 6 4.3703 -7.9489 2.1058 20 17 4.8800 -9.5684 2.4679 21 6 3.5534 -7.7041 1.0024 22 7 3.1492 -6.4947 0.6994 23 6 3.5022 -5.4387 1.4371 24 1 -0.4850 0.8400 -0.0004 25 1 2.3398 -4.5062 -0.7877 26 1 3.1201 -2.0751 1.6286 27 1 4.5504 -2.4085 3.5982 28 1 5.3314 -4.6315 4.2116 29 1 5.4001 -7.0827 3.7612 30 1 3.2466 -8.5325 0.3810 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192980618.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:41:55 Heat of formation + Delta-G solvation = -43.909912 kcal Electronic energy + Delta-G solvation = -20843.467901 eV Core-core repulsion = 17369.806461 eV Total energy + Delta-G solvation = -3473.661440 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 312.012 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.85944 -37.63026 -36.52356 -35.42631 -35.01139 -34.17024 -33.27566 -32.17448 -30.42185 -28.40561 -26.40625 -24.38056 -23.59355 -21.79121 -19.44610 -18.19707 -17.90973 -17.61229 -16.93177 -16.20466 -15.87542 -15.05374 -14.74959 -14.54538 -14.21008 -13.94143 -13.85014 -13.39095 -13.26476 -12.72706 -12.16656 -12.15356 -11.75407 -11.56633 -11.43372 -11.29940 -11.13593 -10.98337 -10.71851 -10.53047 -10.46039 -10.38526 -9.70253 -9.61422 -9.35627 -8.95653 -8.66939 -7.51279 -6.84556 -5.50434 0.38987 0.74560 1.85088 1.94193 2.08514 2.94204 3.00846 3.06396 3.10957 3.92603 4.10189 4.25230 4.33255 4.49826 4.56774 4.73026 4.81786 4.93215 5.27300 5.44854 5.53847 5.60984 5.68484 5.79021 6.12261 6.21522 6.29417 6.42022 6.59389 6.70787 6.99015 7.17263 7.62415 7.76694 7.84071 8.71475 10.09485 Molecular weight = 312.01amu Principal moments of inertia in cm(-1) A = 0.027613 B = 0.004039 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.776236 B = 6929.926336 C = 7629.493413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.135 3.865 3 Si 0.923 3.077 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.261 1.261 7 C -1.024 5.024 8 H 0.111 0.889 9 S 2.698 3.302 10 O -0.988 6.988 11 O -0.992 6.992 12 N -1.054 6.054 13 C 0.231 3.769 14 C -0.171 4.171 15 C -0.057 4.057 16 C -0.145 4.145 17 C -0.066 4.066 18 C -0.054 4.054 19 C -0.088 4.088 20 Cl -0.064 7.064 21 C 0.124 3.876 22 N -0.441 5.441 23 C 0.097 3.903 24 H 0.294 0.706 25 H 0.420 0.580 26 H 0.171 0.829 27 H 0.135 0.865 28 H 0.130 0.870 29 H 0.148 0.852 30 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.832 -10.581 6.071 16.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.085 4.085 3 Si 0.747 3.253 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.185 1.185 7 C -1.157 5.157 8 H 0.129 0.871 9 S 2.799 3.201 10 O -0.978 6.978 11 O -0.983 6.983 12 N -0.793 5.793 13 C 0.129 3.871 14 C -0.195 4.195 15 C -0.076 4.076 16 C -0.165 4.165 17 C -0.069 4.069 18 C -0.081 4.081 19 C -0.117 4.117 20 Cl -0.035 7.035 21 C -0.051 4.051 22 N -0.148 5.148 23 C -0.027 4.027 24 H 0.105 0.895 25 H 0.254 0.746 26 H 0.188 0.812 27 H 0.153 0.847 28 H 0.148 0.852 29 H 0.165 0.835 30 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 10.072 -10.409 5.418 15.464 hybrid contribution 1.497 0.495 0.365 1.618 sum 11.569 -9.914 5.782 16.296 Atomic orbital electron populations 1.69881 1.06873 1.31247 1.38745 1.24760 0.94507 1.00882 0.88338 0.86141 0.79869 0.79307 0.80007 1.18702 1.20007 1.18546 1.30507 1.06180 1.11214 1.67844 0.87100 1.01215 0.72185 0.73424 0.73271 1.93413 1.72173 1.87046 1.45139 1.93404 1.72048 1.87224 1.45583 1.54225 1.52195 1.51591 1.21271 1.17151 0.90875 0.90517 0.88508 1.21984 0.99831 1.00540 0.97171 1.20761 0.94561 0.97297 0.94996 1.20755 1.03409 0.91665 1.00713 1.18513 0.98403 0.93940 0.96010 1.21333 0.97867 0.90338 0.98570 1.21758 1.03153 0.86965 0.99819 1.98369 1.89861 1.20940 1.94341 1.22816 0.93488 0.94896 0.93895 1.67929 1.19787 0.98380 1.28736 1.18767 0.98588 0.92087 0.93295 0.89496 0.74556 0.81150 0.84742 0.85175 0.83464 0.81774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.55 13.19 55.43 0.73 -22.82 16 2 C 0.13 3.53 5.46 -17.82 -0.10 3.44 16 3 Si 0.92 19.27 29.54 -169.99 -5.02 14.24 16 4 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 5 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 6 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 7 C -1.02 -26.35 7.57 30.60 0.23 -26.12 16 8 H 0.11 2.54 6.92 -52.48 -0.36 2.17 16 9 S 2.70 70.37 4.62 -107.50 -0.50 69.88 16 10 O -0.99 -28.31 17.42 -57.17 -1.00 -29.31 16 11 O -0.99 -28.63 18.02 -57.17 -1.03 -29.66 16 12 N -1.05 -22.14 5.67 32.61 0.18 -21.95 16 13 C 0.23 4.50 6.25 -83.43 -0.52 3.98 16 14 C -0.17 -3.14 8.89 -39.39 -0.35 -3.50 16 15 C -0.06 -0.82 9.94 -39.97 -0.40 -1.22 16 16 C -0.15 -1.84 9.76 -39.49 -0.39 -2.23 16 17 C -0.07 -0.94 5.74 -106.82 -0.61 -1.56 16 18 C -0.05 -0.63 9.66 -39.19 -0.38 -1.01 16 19 C -0.09 -1.03 6.30 -39.70 -0.25 -1.28 16 20 Cl -0.06 -0.62 28.96 -51.86 -1.50 -2.12 16 21 C 0.12 1.62 10.94 -17.42 -0.19 1.42 16 22 N -0.44 -7.27 9.87 -10.82 -0.11 -7.38 16 23 C 0.10 1.68 6.62 -84.68 -0.56 1.12 16 24 H 0.29 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.42 7.92 8.65 -34.48 -0.30 7.62 16 26 H 0.17 3.40 4.44 -52.49 -0.23 3.16 16 27 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 28 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 29 H 0.15 1.26 8.06 -52.48 -0.42 0.83 16 30 H 0.17 1.67 8.06 -52.49 -0.42 1.24 16 LS Contribution 296.29 15.07 4.47 4.47 Total: -1.00 -33.48 296.29 -9.00 -42.48 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -1.72 Total: 9.11 kcal Atomic # 6 Polarization: -23.43 SS G_CDS: -3.51 Total: -26.94 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: 0.81 Total: -52.15 kcal Atomic # 8 Polarization: -56.94 SS G_CDS: -2.03 Total: -58.97 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.02 Total: 14.24 kcal Atomic # 16 Polarization: 70.37 SS G_CDS: -0.50 Total: 69.88 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.50 Total: -2.12 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -33.48 -9.00 -42.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192980618.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.428 kcal (2) G-P(sol) polarization free energy of solvation -33.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds