Wall clock time and date at job start Fri Apr 10 2020 22:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99486 * 2 1 4 4 H 1.48500 * 109.46851 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47159 * 300.00065 * 3 2 1 6 6 H 1.48499 * 109.46858 * 60.00339 * 3 2 1 7 7 C 1.37875 * 120.00147 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99730 * 179.97438 * 7 2 1 9 9 S 1.76197 * 120.00346 * 359.97438 * 7 2 1 10 10 O 1.42101 * 106.39744 * 71.33703 * 9 7 2 11 11 O 1.42098 * 106.40370 * 298.42154 * 9 7 2 12 12 N 1.65596 * 107.21932 * 184.87761 * 9 7 2 13 13 C 1.39666 * 120.00140 * 64.24601 * 12 9 7 14 14 C 1.39999 * 119.72765 * 75.16760 * 13 12 9 15 15 C 1.35907 * 120.99056 * 180.28716 * 14 13 12 16 16 C 1.40636 * 119.99608 * 359.48343 * 15 14 13 17 17 N 1.33735 * 120.92303 * 180.23614 * 16 15 14 18 18 C 1.31098 * 121.39438 * 180.27953 * 17 16 15 19 19 C 1.39250 * 121.78229 * 0.02562 * 18 17 16 20 20 C 1.36726 * 119.89723 * 359.97438 * 19 18 17 21 21 Cl 1.73605 * 120.92906 * 179.97438 * 20 19 18 22 22 C 1.40952 * 118.13961 * 359.97438 * 20 19 18 23 23 C 1.37796 * 119.72561 * 255.19859 * 13 12 9 24 24 H 0.97000 * 120.00701 * 359.97438 * 1 2 3 25 25 H 0.96997 * 120.00082 * 244.24979 * 12 9 7 26 26 H 1.08000 * 119.50536 * 0.04835 * 14 13 12 27 27 H 1.08003 * 120.00821 * 179.76667 * 15 14 13 28 28 H 1.08001 * 119.11254 * 179.97438 * 18 17 16 29 29 H 1.07992 * 120.04909 * 179.97438 * 19 18 17 30 30 H 1.08002 * 120.26562 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 16 1.1237 -2.7200 -0.0005 10 8 0.5448 -2.8491 -1.2919 11 8 0.3616 -2.7435 1.1986 12 7 2.2436 -3.9325 0.1333 13 6 3.0213 -4.0405 1.2883 14 6 2.4516 -4.5429 2.4643 15 6 3.1831 -4.6536 3.6044 16 6 4.5363 -4.2708 3.6115 17 7 5.2746 -4.3763 4.7216 18 6 6.5353 -4.0172 4.7401 19 6 7.1696 -3.5084 3.6097 20 6 6.4738 -3.3736 2.4404 21 17 7.2378 -2.7419 1.0152 22 6 5.1189 -3.7620 2.4246 23 6 4.3428 -3.6510 1.2611 24 1 -0.4851 0.8400 0.0004 25 1 2.3595 -4.5677 -0.5906 26 1 1.4143 -4.8434 2.4667 27 1 2.7265 -5.0399 4.5037 28 1 7.0969 -4.1178 5.6571 29 1 8.2095 -3.2208 3.6565 30 1 4.7776 -3.2640 0.3514 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192981950.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:08 Heat of formation + Delta-G solvation = -67.645044 kcal Electronic energy + Delta-G solvation = -20918.710939 eV Core-core repulsion = 17444.020266 eV Total energy + Delta-G solvation = -3474.690672 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 312.012 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.90916 -38.95650 -37.85314 -37.43911 -36.22972 -35.35940 -35.04730 -34.11805 -31.45775 -29.78190 -28.29663 -25.23006 -24.50978 -23.22350 -21.18773 -20.02116 -19.25200 -18.85267 -18.33694 -18.04588 -17.15484 -16.68778 -16.04614 -15.80619 -15.65537 -15.63687 -15.18476 -14.76455 -14.58093 -14.04694 -13.68834 -13.46050 -13.33846 -13.06625 -13.05062 -12.90629 -12.59657 -12.49277 -12.37588 -12.32451 -12.05023 -11.29756 -11.22462 -11.13490 -10.76923 -10.65697 -9.80948 -9.23565 -8.79629 -7.52032 -0.83556 -0.38592 0.22695 0.78054 0.83598 1.29342 1.30656 1.47842 1.78362 2.16487 2.54344 2.76675 2.93746 3.25367 3.48728 3.53031 3.63663 3.84519 3.98160 4.17129 4.26174 4.42345 4.47636 4.60710 4.71898 4.90440 4.97083 5.15497 5.25889 5.31429 5.39815 5.67273 5.86501 6.24439 6.74899 6.80196 8.17279 Molecular weight = 312.01amu Principal moments of inertia in cm(-1) A = 0.014519 B = 0.005651 C = 0.004808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.064283 B = 4953.680909 C = 5822.805959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.075 3.925 3 Si 0.982 3.018 4 H -0.248 1.248 5 H -0.256 1.256 6 H -0.259 1.259 7 C -1.034 5.034 8 H 0.117 0.883 9 S 2.714 3.286 10 O -1.036 7.036 11 O -1.023 7.023 12 N -1.071 6.071 13 C 0.148 3.852 14 C -0.100 4.100 15 C -0.084 4.084 16 C 0.122 3.878 17 N -0.486 5.486 18 C 0.148 3.852 19 C -0.150 4.150 20 C 0.007 3.993 21 Cl -0.043 7.043 22 C -0.105 4.105 23 C -0.101 4.101 24 H 0.300 0.700 25 H 0.426 0.574 26 H 0.139 0.861 27 H 0.163 0.837 28 H 0.213 0.787 29 H 0.185 0.815 30 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.413 -6.645 7.806 20.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.138 4.138 3 Si 0.800 3.200 4 H -0.171 1.171 5 H -0.180 1.180 6 H -0.183 1.183 7 C -1.168 5.168 8 H 0.136 0.864 9 S 2.816 3.184 10 O -1.026 7.026 11 O -1.013 7.013 12 N -0.825 5.825 13 C 0.053 3.947 14 C -0.122 4.122 15 C -0.103 4.103 16 C 0.001 3.999 17 N -0.194 5.194 18 C -0.026 4.026 19 C -0.170 4.170 20 C -0.028 4.028 21 Cl -0.014 7.014 22 C -0.109 4.109 23 C -0.123 4.123 24 H 0.110 0.890 25 H 0.265 0.735 26 H 0.157 0.843 27 H 0.181 0.819 28 H 0.230 0.770 29 H 0.202 0.798 30 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 15.760 -6.917 8.396 19.149 hybrid contribution 0.732 1.181 -1.627 2.140 sum 16.492 -5.736 6.769 18.727 Atomic orbital electron populations 1.69976 1.08573 1.32325 1.41222 1.25906 0.95337 1.05019 0.87544 0.85216 0.79657 0.75540 0.79583 1.17130 1.18007 1.18313 1.30796 1.07028 1.12155 1.66789 0.86445 1.00299 0.72484 0.73791 0.71803 1.93338 1.77476 1.88022 1.43812 1.93322 1.70304 1.87840 1.49841 1.53193 1.57055 1.47679 1.24595 1.17410 0.90605 0.99597 0.87071 1.21446 1.01270 0.97165 0.92328 1.20838 0.91203 0.99484 0.98733 1.18964 0.94918 0.97672 0.88325 1.68077 1.08210 1.16770 1.26346 1.23753 0.89560 0.90192 0.99065 1.22293 1.03559 1.00302 0.90873 1.21288 0.91960 0.98727 0.90776 1.98400 1.79994 1.84606 1.38390 1.18606 0.93772 1.03052 0.95423 1.21632 0.93481 0.98655 0.98511 0.89004 0.73520 0.84300 0.81901 0.77012 0.79767 0.83780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.64 13.10 21.45 0.28 -52.36 16 2 C 0.08 4.18 5.46 84.65 0.46 4.64 16 3 Si 0.98 41.38 29.54 68.60 2.03 43.41 16 4 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 5 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 6 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 7 C -1.03 -56.69 9.66 67.73 0.65 -56.04 16 8 H 0.12 5.89 7.81 -2.91 -0.02 5.86 16 9 S 2.71 144.43 5.02 -56.49 -0.28 144.15 16 10 O -1.04 -60.87 18.02 -128.00 -2.31 -63.18 16 11 O -1.02 -59.72 16.92 -128.00 -2.17 -61.89 16 12 N -1.07 -42.63 5.68 -51.38 -0.29 -42.92 16 13 C 0.15 5.47 5.78 38.22 0.22 5.69 16 14 C -0.10 -3.47 9.17 22.16 0.20 -3.27 16 15 C -0.08 -2.52 9.96 22.31 0.22 -2.30 16 16 C 0.12 3.60 6.60 40.29 0.27 3.87 16 17 N -0.49 -12.08 10.34 -188.63 -1.95 -14.03 16 18 C 0.15 2.46 11.14 85.05 0.95 3.41 16 19 C -0.15 -2.49 9.84 22.16 0.22 -2.27 16 20 C 0.01 0.18 6.37 22.58 0.14 0.32 16 21 Cl -0.04 -0.98 27.66 -2.72 -0.08 -1.06 16 22 C -0.10 -3.14 5.74 -21.27 -0.12 -3.27 16 23 C -0.10 -3.37 9.41 22.67 0.21 -3.15 16 24 H 0.30 15.88 8.31 -92.71 -0.77 15.11 16 25 H 0.43 14.08 8.95 -96.75 -0.87 13.21 16 26 H 0.14 4.82 7.92 -2.91 -0.02 4.80 16 27 H 0.16 4.05 8.06 -2.91 -0.02 4.02 16 28 H 0.21 1.48 8.06 -2.91 -0.02 1.46 16 29 H 0.19 1.62 8.06 -2.91 -0.02 1.60 16 30 H 0.14 4.58 7.06 -2.91 -0.02 4.56 16 Total: -1.00 -76.82 300.96 -0.99 -77.81 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: 0.35 Total: 22.42 kcal Atomic # 6 Polarization: -55.78 SS G_CDS: 3.43 Total: -52.35 kcal Atomic # 7 Polarization: -107.35 SS G_CDS: -1.96 Total: -109.31 kcal Atomic # 8 Polarization: -120.59 SS G_CDS: -4.47 Total: -125.07 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Atomic # 16 Polarization: 144.43 SS G_CDS: -0.28 Total: 144.15 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -0.08 Total: -1.06 kcal Total: -76.82 -0.99 -77.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192981950.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.167 kcal (2) G-P(sol) polarization free energy of solvation -76.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds