Wall clock time and date at job start Fri Apr 10 2020 22:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00321 * 2 1 4 4 H 1.48498 * 109.47383 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47233 * 300.00400 * 3 2 1 6 6 H 1.48508 * 109.46785 * 60.00144 * 3 2 1 7 7 C 1.37887 * 119.99708 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99673 * 175.77336 * 7 2 1 9 9 C 1.50693 * 120.00152 * 356.04111 * 7 2 1 10 10 H 1.09001 * 109.47296 * 175.62584 * 9 7 2 11 11 C 1.50702 * 109.46928 * 55.62571 * 9 7 2 12 12 O 1.21282 * 119.99742 * 239.99738 * 11 9 7 13 13 N 1.34770 * 120.00319 * 60.00117 * 11 9 7 14 14 O 1.41599 * 120.00540 * 179.97438 * 13 11 9 15 15 C 1.42897 * 114.00300 * 179.97438 * 14 13 11 16 16 C 1.50703 * 109.47018 * 179.97438 * 15 14 13 17 17 C 1.38679 * 120.41786 * 269.72386 * 16 15 14 18 18 C 1.38624 * 118.41387 * 179.78448 * 17 16 15 19 19 C 1.38223 * 119.16729 * 0.51361 * 18 17 16 20 20 N 1.31859 * 120.76213 * 359.72790 * 19 18 17 21 21 C 1.31888 * 121.72492 * 359.97438 * 20 19 18 22 22 C 1.50705 * 109.47191 * 295.62552 * 9 7 2 23 23 C 1.38234 * 119.99899 * 346.68031 * 22 9 7 24 24 C 1.38231 * 119.99881 * 179.81025 * 23 22 9 25 25 C 1.38238 * 120.00020 * 0.39492 * 24 23 22 26 26 C 1.38229 * 119.99964 * 359.85855 * 25 24 23 27 27 C 1.38234 * 120.00054 * 359.95375 * 26 25 24 28 28 H 0.97003 * 120.00207 * 359.97438 * 1 2 3 29 29 H 0.97002 * 119.99696 * 359.97438 * 13 11 9 30 30 H 1.08996 * 109.47425 * 300.00084 * 15 14 13 31 31 H 1.09004 * 109.46673 * 60.00506 * 15 14 13 32 32 H 1.07997 * 120.78717 * 0.02562 * 17 16 15 33 33 H 1.08003 * 120.41360 * 180.22021 * 18 17 16 34 34 H 1.08000 * 119.62269 * 179.74606 * 19 18 17 35 35 H 1.07997 * 119.62059 * 180.02562 * 21 20 19 36 36 H 1.07998 * 120.00335 * 0.02562 * 23 22 9 37 37 H 1.08005 * 120.00220 * 180.22890 * 24 23 22 38 38 H 1.08003 * 119.99989 * 179.83732 * 25 24 23 39 39 H 1.08004 * 120.00390 * 179.97438 * 26 25 24 40 40 H 1.08010 * 120.00184 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1942 -0.0005 8 1 3.0823 -1.1954 -0.0695 9 6 1.2537 -2.4977 0.0890 10 1 1.9543 -3.3276 -0.0032 11 6 0.2394 -2.5705 -1.0233 12 8 -0.9400 -2.6794 -0.7622 13 7 0.6429 -2.5148 -2.3079 14 8 -0.3100 -2.5838 -3.3530 15 6 0.2573 -2.5124 -4.6626 16 6 -0.8411 -2.5954 -5.6911 17 6 -1.2418 -3.8245 -6.1929 18 6 -2.2591 -3.8529 -7.1341 19 6 -2.8290 -2.6629 -7.5462 20 7 -2.4191 -1.5117 -7.0508 21 6 -1.4580 -1.4472 -6.1499 22 6 0.5485 -2.5810 1.4182 23 6 0.8702 -1.6935 2.4281 24 6 0.2205 -1.7674 3.6460 25 6 -0.7450 -2.7339 3.8568 26 6 -1.0630 -3.6247 2.8488 27 6 -0.4161 -3.5484 1.6295 28 1 -0.4850 0.8401 0.0004 29 1 1.5861 -2.4274 -2.5167 30 1 0.7915 -1.5692 -4.7763 31 1 0.9502 -3.3419 -4.8040 32 1 -0.7750 -4.7381 -5.8555 33 1 -2.5990 -4.7926 -7.5438 34 1 -3.6193 -2.6761 -8.2821 35 1 -1.1492 -0.4858 -5.7668 36 1 1.6266 -0.9402 2.2644 37 1 0.4692 -1.0717 4.4338 38 1 -1.2507 -2.7933 4.8093 39 1 -1.8171 -4.3801 3.0136 40 1 -0.6642 -4.2446 0.8420 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151453469.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:41:05 Heat of formation + Delta-G solvation = 36.508494 kcal Electronic energy + Delta-G solvation = -24961.742410 eV Core-core repulsion = 21322.914341 eV Total energy + Delta-G solvation = -3638.828068 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.24579 -38.89448 -37.58919 -36.34536 -33.65629 -33.07868 -31.95412 -30.95476 -30.42630 -29.72627 -27.23524 -26.11445 -23.93244 -23.67134 -22.09674 -21.33089 -20.83737 -19.36479 -17.58687 -17.15551 -16.85676 -16.58362 -15.83547 -15.39659 -15.15242 -14.80250 -14.51244 -14.22270 -13.92337 -13.73481 -13.62867 -13.23524 -13.17125 -12.83079 -12.38191 -12.23122 -12.15718 -12.09104 -11.62448 -11.35740 -11.01978 -10.80526 -10.60212 -10.43033 -10.07909 -9.95300 -9.75077 -9.55696 -9.43996 -9.19212 -8.80792 -8.36348 -7.86156 -7.73415 -7.47255 -6.20331 -4.37813 0.90727 1.16268 2.43307 2.55805 2.87517 3.16588 3.26906 3.28087 3.74757 4.14800 4.31255 4.34944 4.66661 4.72888 4.85549 4.87981 4.95007 5.07732 5.24147 5.29358 5.49348 5.59323 5.67574 5.82816 5.93452 5.96226 6.01673 6.14480 6.26005 6.40436 6.56508 6.62970 6.70520 6.81165 7.07256 7.15537 7.50709 7.57957 7.63146 7.69267 7.79613 7.85660 8.09045 8.19989 8.45613 8.70037 9.30187 9.69753 10.80713 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.015071 B = 0.003814 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.398799 B = 7339.838587 C = 8541.478336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.075 3.925 3 Si 0.887 3.113 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.280 1.280 7 C -0.550 4.550 8 H 0.071 0.929 9 C 0.072 3.928 10 H 0.063 0.937 11 C 0.561 3.439 12 O -0.529 6.529 13 N -0.598 5.598 14 O -0.154 6.154 15 C 0.080 3.920 16 C -0.133 4.133 17 C -0.053 4.053 18 C -0.178 4.178 19 C 0.100 3.900 20 N -0.487 5.487 21 C 0.124 3.876 22 C -0.018 4.018 23 C -0.069 4.069 24 C -0.147 4.147 25 C -0.142 4.142 26 C -0.143 4.143 27 C -0.099 4.099 28 H 0.267 0.733 29 H 0.402 0.598 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.155 0.845 35 H 0.159 0.841 36 H 0.129 0.871 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.809 -6.813 -8.766 11.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.134 4.134 3 Si 0.714 3.286 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.206 1.206 7 C -0.588 4.588 8 H 0.090 0.910 9 C 0.050 3.950 10 H 0.081 0.919 11 C 0.350 3.650 12 O -0.402 6.402 13 N -0.303 5.303 14 O -0.157 6.157 15 C 0.002 3.998 16 C -0.136 4.136 17 C -0.079 4.079 18 C -0.198 4.198 19 C -0.057 4.057 20 N -0.196 5.196 21 C -0.033 4.033 22 C -0.019 4.019 23 C -0.087 4.087 24 C -0.165 4.165 25 C -0.160 4.160 26 C -0.161 4.161 27 C -0.117 4.117 28 H 0.078 0.922 29 H 0.241 0.759 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.173 0.827 35 H 0.176 0.824 36 H 0.147 0.853 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.117 -6.010 -8.820 10.673 hybrid contribution 1.084 0.490 -0.170 1.201 sum 1.201 -5.521 -8.990 10.618 Atomic orbital electron populations 1.70045 1.05534 1.27291 1.43942 1.25093 0.94813 0.99403 0.94064 0.86600 0.80245 0.83735 0.78025 1.19360 1.20922 1.20582 1.20763 0.93293 0.88599 1.56105 0.91049 1.17789 0.91830 0.98746 0.86590 0.91933 1.21553 0.91008 0.72519 0.79898 1.90561 1.18867 1.48856 1.81883 1.47897 1.03780 1.80515 0.98157 1.90618 1.19863 1.96480 1.08698 1.21481 0.93841 1.01845 0.82636 1.20518 0.99821 0.94736 0.98532 1.21555 0.94768 0.97671 0.93925 1.22132 0.98150 1.00085 0.99413 1.22828 0.97700 0.87812 0.97360 1.67758 1.12299 1.29307 1.10215 1.22786 0.90410 0.98466 0.91599 1.19741 0.94611 0.92739 0.94835 1.21167 0.98932 0.97195 0.91363 1.21003 0.98605 0.99104 0.97784 1.20807 0.99478 0.97381 0.98381 1.20844 1.00836 1.00084 0.94334 1.21023 0.96099 0.98994 0.95584 0.92222 0.75949 0.91315 0.91741 0.84552 0.84612 0.82727 0.82418 0.85276 0.87862 0.88055 0.87923 0.87269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.81 11.04 55.43 0.61 -22.20 16 2 C 0.08 1.86 3.93 -17.82 -0.07 1.79 16 3 Si 0.89 19.33 29.54 -169.99 -5.02 14.31 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 7 C -0.55 -12.92 7.11 -34.44 -0.24 -13.17 16 8 H 0.07 1.60 7.82 -52.49 -0.41 1.19 16 9 C 0.07 1.65 2.78 -94.07 -0.26 1.39 16 10 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 11 C 0.56 13.55 5.48 -10.99 -0.06 13.49 16 12 O -0.53 -14.81 14.29 -12.64 -0.18 -14.99 16 13 N -0.60 -12.31 6.29 31.22 0.20 -12.11 16 14 O -0.15 -3.09 11.09 -29.66 -0.33 -3.42 16 15 C 0.08 1.14 6.38 36.01 0.23 1.37 16 16 C -0.13 -1.81 5.53 -104.48 -0.58 -2.38 16 17 C -0.05 -0.62 9.86 -39.28 -0.39 -1.00 16 18 C -0.18 -1.81 10.11 -39.44 -0.40 -2.21 16 19 C 0.10 1.12 11.18 -17.55 -0.20 0.93 16 20 N -0.49 -6.87 10.36 -13.25 -0.14 -7.00 16 21 C 0.12 1.76 10.86 -17.55 -0.19 1.57 16 22 C -0.02 -0.43 4.59 -104.62 -0.48 -0.91 16 23 C -0.07 -1.56 8.39 -39.59 -0.33 -1.90 16 24 C -0.15 -3.00 10.05 -39.58 -0.40 -3.40 16 25 C -0.14 -2.77 10.05 -39.58 -0.40 -3.17 16 26 C -0.14 -2.90 10.05 -39.59 -0.40 -3.30 16 27 C -0.10 -2.22 8.21 -39.58 -0.32 -2.55 16 28 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.40 6.97 8.43 -40.82 -0.34 6.63 16 30 H 0.07 0.90 8.09 -51.93 -0.42 0.48 16 31 H 0.06 0.75 8.09 -51.93 -0.42 0.33 16 32 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 33 H 0.14 0.96 8.06 -52.48 -0.42 0.53 16 34 H 0.16 1.25 8.06 -52.49 -0.42 0.82 16 35 H 0.16 2.10 8.06 -52.49 -0.42 1.68 16 36 H 0.13 3.00 6.04 -52.49 -0.32 2.68 16 37 H 0.10 1.84 8.06 -52.48 -0.42 1.42 16 38 H 0.10 1.66 8.06 -52.48 -0.42 1.24 16 39 H 0.10 1.80 8.06 -52.48 -0.42 1.38 16 40 H 0.11 2.45 6.99 -52.48 -0.37 2.08 16 LS Contribution 346.80 15.07 5.23 5.23 Total: -1.00 -32.64 346.80 -8.92 -41.56 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -4.80 Total: 12.09 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: -4.49 Total: -13.45 kcal Atomic # 7 Polarization: -41.99 SS G_CDS: 0.67 Total: -41.32 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.51 Total: -18.42 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.02 Total: 14.31 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.64 -8.92 -41.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151453469.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.066 kcal (2) G-P(sol) polarization free energy of solvation -32.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds