Wall clock time and date at job start Fri Apr 10 2020 22:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00321 * 2 1 4 4 H 1.48498 * 109.47383 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47233 * 300.00400 * 3 2 1 6 6 H 1.48508 * 109.46785 * 60.00144 * 3 2 1 7 7 C 1.37887 * 119.99708 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99673 * 175.77336 * 7 2 1 9 9 C 1.50693 * 120.00152 * 356.04111 * 7 2 1 10 10 H 1.09001 * 109.47296 * 175.62584 * 9 7 2 11 11 C 1.50702 * 109.46928 * 55.62571 * 9 7 2 12 12 O 1.21282 * 119.99742 * 239.99738 * 11 9 7 13 13 N 1.34770 * 120.00319 * 60.00117 * 11 9 7 14 14 O 1.41599 * 120.00540 * 179.97438 * 13 11 9 15 15 C 1.42897 * 114.00300 * 179.97438 * 14 13 11 16 16 C 1.50703 * 109.47018 * 179.97438 * 15 14 13 17 17 C 1.38679 * 120.41786 * 269.72386 * 16 15 14 18 18 C 1.38624 * 118.41387 * 179.78448 * 17 16 15 19 19 C 1.38223 * 119.16729 * 0.51361 * 18 17 16 20 20 N 1.31859 * 120.76213 * 359.72790 * 19 18 17 21 21 C 1.31888 * 121.72492 * 359.97438 * 20 19 18 22 22 C 1.50705 * 109.47191 * 295.62552 * 9 7 2 23 23 C 1.38234 * 119.99899 * 346.68031 * 22 9 7 24 24 C 1.38231 * 119.99881 * 179.81025 * 23 22 9 25 25 C 1.38238 * 120.00020 * 0.39492 * 24 23 22 26 26 C 1.38229 * 119.99964 * 359.85855 * 25 24 23 27 27 C 1.38234 * 120.00054 * 359.95375 * 26 25 24 28 28 H 0.97003 * 120.00207 * 359.97438 * 1 2 3 29 29 H 0.97002 * 119.99696 * 359.97438 * 13 11 9 30 30 H 1.08996 * 109.47425 * 300.00084 * 15 14 13 31 31 H 1.09004 * 109.46673 * 60.00506 * 15 14 13 32 32 H 1.07997 * 120.78717 * 0.02562 * 17 16 15 33 33 H 1.08003 * 120.41360 * 180.22021 * 18 17 16 34 34 H 1.08000 * 119.62269 * 179.74606 * 19 18 17 35 35 H 1.07997 * 119.62059 * 180.02562 * 21 20 19 36 36 H 1.07998 * 120.00335 * 0.02562 * 23 22 9 37 37 H 1.08005 * 120.00220 * 180.22890 * 24 23 22 38 38 H 1.08003 * 119.99989 * 179.83732 * 25 24 23 39 39 H 1.08004 * 120.00390 * 179.97438 * 26 25 24 40 40 H 1.08010 * 120.00184 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1942 -0.0005 8 1 3.0823 -1.1954 -0.0695 9 6 1.2537 -2.4977 0.0890 10 1 1.9543 -3.3276 -0.0032 11 6 0.2394 -2.5705 -1.0233 12 8 -0.9400 -2.6794 -0.7622 13 7 0.6429 -2.5148 -2.3079 14 8 -0.3100 -2.5838 -3.3530 15 6 0.2573 -2.5124 -4.6626 16 6 -0.8411 -2.5954 -5.6911 17 6 -1.2418 -3.8245 -6.1929 18 6 -2.2591 -3.8529 -7.1341 19 6 -2.8290 -2.6629 -7.5462 20 7 -2.4191 -1.5117 -7.0508 21 6 -1.4580 -1.4472 -6.1499 22 6 0.5485 -2.5810 1.4182 23 6 0.8702 -1.6935 2.4281 24 6 0.2205 -1.7674 3.6460 25 6 -0.7450 -2.7339 3.8568 26 6 -1.0630 -3.6247 2.8488 27 6 -0.4161 -3.5484 1.6295 28 1 -0.4850 0.8401 0.0004 29 1 1.5861 -2.4274 -2.5167 30 1 0.7915 -1.5692 -4.7763 31 1 0.9502 -3.3419 -4.8040 32 1 -0.7750 -4.7381 -5.8555 33 1 -2.5990 -4.7926 -7.5438 34 1 -3.6193 -2.6761 -8.2821 35 1 -1.1492 -0.4858 -5.7668 36 1 1.6266 -0.9402 2.2644 37 1 0.4692 -1.0717 4.4338 38 1 -1.2507 -2.7933 4.8093 39 1 -1.8171 -4.3801 3.0136 40 1 -0.6642 -4.2446 0.8420 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151453469.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:41:04 Heat of formation + Delta-G solvation = 17.348255 kcal Electronic energy + Delta-G solvation = -24962.573260 eV Core-core repulsion = 21322.914341 eV Total energy + Delta-G solvation = -3639.658919 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.20497 -40.62448 -39.19088 -37.91268 -35.50406 -34.23767 -33.01155 -32.69865 -31.90627 -31.36758 -28.90492 -27.29845 -25.74951 -24.61100 -23.11355 -22.98795 -22.50342 -21.09986 -19.10630 -18.65287 -18.07705 -17.61193 -17.37372 -17.01994 -16.80249 -16.15158 -15.97891 -15.75071 -15.33689 -15.17385 -14.84469 -14.65501 -14.41642 -14.06601 -13.99924 -13.86877 -13.81658 -13.59163 -13.04034 -12.79497 -12.65396 -12.48740 -12.30067 -11.93656 -11.75802 -11.44038 -11.19952 -10.89929 -10.71702 -10.52353 -10.26104 -10.11283 -9.53101 -9.39109 -9.13259 -8.10005 -6.30438 -0.06652 0.24041 0.82485 0.90454 1.37649 1.44323 1.48230 1.56548 2.32801 2.49085 2.77825 3.18828 3.29724 3.42859 3.70926 3.76946 3.92800 4.00611 4.08356 4.29875 4.34820 4.37959 4.40192 4.49641 4.59448 4.61890 4.69432 4.75518 4.97092 5.03414 5.08716 5.13935 5.20878 5.43533 5.52477 5.67429 5.69875 5.88468 5.90014 5.95537 6.20160 6.38822 6.51614 6.70920 6.91010 6.93130 7.40303 7.93249 8.89953 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.015071 B = 0.003814 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.398799 B = 7339.838587 C = 8541.478336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.252 1.252 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.539 4.539 8 H 0.083 0.917 9 C 0.063 3.937 10 H 0.084 0.916 11 C 0.559 3.441 12 O -0.576 6.576 13 N -0.588 5.588 14 O -0.183 6.183 15 C 0.078 3.922 16 C -0.150 4.150 17 C -0.058 4.058 18 C -0.167 4.167 19 C 0.093 3.907 20 N -0.515 5.515 21 C 0.102 3.898 22 C -0.040 4.040 23 C -0.090 4.090 24 C -0.151 4.151 25 C -0.139 4.139 26 C -0.146 4.146 27 C -0.118 4.118 28 H 0.256 0.744 29 H 0.416 0.584 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.158 0.842 33 H 0.175 0.825 34 H 0.187 0.813 35 H 0.151 0.849 36 H 0.118 0.882 37 H 0.129 0.871 38 H 0.139 0.861 39 H 0.130 0.870 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.252 -7.949 -8.989 12.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.165 4.165 3 Si 0.768 3.232 4 H -0.175 1.175 5 H -0.219 1.219 6 H -0.213 1.213 7 C -0.576 4.576 8 H 0.101 0.899 9 C 0.042 3.958 10 H 0.101 0.899 11 C 0.349 3.651 12 O -0.453 6.453 13 N -0.293 5.293 14 O -0.187 6.187 15 C 0.001 3.999 16 C -0.154 4.154 17 C -0.084 4.084 18 C -0.187 4.187 19 C -0.063 4.063 20 N -0.224 5.224 21 C -0.054 4.054 22 C -0.041 4.041 23 C -0.108 4.108 24 C -0.168 4.168 25 C -0.157 4.157 26 C -0.164 4.164 27 C -0.136 4.136 28 H 0.066 0.934 29 H 0.257 0.743 30 H 0.092 0.908 31 H 0.112 0.888 32 H 0.175 0.825 33 H 0.192 0.808 34 H 0.204 0.796 35 H 0.168 0.832 36 H 0.136 0.864 37 H 0.147 0.853 38 H 0.157 0.843 39 H 0.148 0.852 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.640 -7.152 -9.072 11.569 hybrid contribution 0.917 0.746 -0.207 1.201 sum 1.557 -6.405 -9.278 11.381 Atomic orbital electron populations 1.70228 1.07179 1.26958 1.46583 1.25653 0.95001 1.02044 0.93844 0.85741 0.80070 0.80358 0.77022 1.17543 1.21866 1.21326 1.21024 0.93738 0.88729 1.54112 0.89874 1.17939 0.92049 0.99289 0.86550 0.89861 1.21686 0.90476 0.71894 0.81031 1.90518 1.20655 1.51178 1.82941 1.47544 1.04590 1.79006 0.98145 1.90587 1.20879 1.96681 1.10563 1.21745 0.94687 1.03364 0.80144 1.20534 1.00369 0.95563 0.98895 1.21915 0.95052 0.97557 0.93918 1.22554 0.96746 1.01293 0.98075 1.23465 0.98045 0.87454 0.97366 1.67747 1.12708 1.31138 1.10845 1.22803 0.91325 0.98719 0.92598 1.19874 0.95516 0.93552 0.95149 1.21188 0.99752 0.97298 0.92554 1.21346 0.98250 0.99689 0.97562 1.21214 0.98751 0.96142 0.99600 1.21209 1.00792 1.00782 0.93645 1.21081 0.96842 0.99220 0.96498 0.93426 0.74300 0.90803 0.88836 0.82480 0.80774 0.79602 0.83168 0.86436 0.85280 0.84290 0.85246 0.88272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.96 11.04 21.45 0.24 -48.72 16 2 C 0.04 1.96 3.93 84.66 0.33 2.29 16 3 Si 0.94 39.83 29.54 68.60 2.03 41.86 16 4 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 5 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.54 -25.16 7.11 25.60 0.18 -24.98 16 8 H 0.08 3.62 7.82 -2.91 -0.02 3.60 16 9 C 0.06 2.92 2.78 -13.03 -0.04 2.89 16 10 H 0.08 3.36 8.14 -2.39 -0.02 3.34 16 11 C 0.56 27.56 5.48 87.66 0.48 28.04 16 12 O -0.58 -33.35 14.29 14.36 0.21 -33.14 16 13 N -0.59 -24.45 6.29 -173.54 -1.09 -25.54 16 14 O -0.18 -7.46 11.09 -21.39 -0.24 -7.69 16 15 C 0.08 2.18 6.38 71.24 0.45 2.63 16 16 C -0.15 -4.04 5.53 -19.77 -0.11 -4.15 16 17 C -0.06 -1.25 9.86 22.47 0.22 -1.03 16 18 C -0.17 -2.95 10.11 22.36 0.23 -2.72 16 19 C 0.09 1.93 11.18 84.69 0.95 2.88 16 20 N -0.52 -14.43 10.36 -195.84 -2.03 -16.46 16 21 C 0.10 2.96 10.86 84.67 0.92 3.88 16 22 C -0.04 -1.89 4.59 -19.86 -0.09 -1.98 16 23 C -0.09 -4.10 8.39 22.27 0.19 -3.91 16 24 C -0.15 -5.94 10.05 22.27 0.22 -5.72 16 25 C -0.14 -5.10 10.05 22.27 0.22 -4.87 16 26 C -0.15 -5.76 10.05 22.27 0.22 -5.54 16 27 C -0.12 -5.37 8.21 22.27 0.18 -5.19 16 28 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 29 H 0.42 14.31 8.43 -92.71 -0.78 13.53 16 30 H 0.07 1.95 8.09 -2.39 -0.02 1.93 16 31 H 0.09 2.03 8.09 -2.38 -0.02 2.01 16 32 H 0.16 2.62 8.06 -2.91 -0.02 2.59 16 33 H 0.17 1.69 8.06 -2.91 -0.02 1.66 16 34 H 0.19 2.47 8.06 -2.91 -0.02 2.45 16 35 H 0.15 4.31 8.06 -2.91 -0.02 4.29 16 36 H 0.12 5.50 6.04 -2.91 -0.02 5.48 16 37 H 0.13 4.31 8.06 -2.91 -0.02 4.29 16 38 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 39 H 0.13 4.28 8.06 -2.91 -0.02 4.26 16 40 H 0.10 4.60 6.99 -2.91 -0.02 4.58 16 Total: -1.00 -72.40 346.80 3.96 -68.43 By element: Atomic # 1 Polarization: 38.47 SS G_CDS: 0.29 Total: 38.76 kcal Atomic # 6 Polarization: -22.06 SS G_CDS: 4.57 Total: -17.49 kcal Atomic # 7 Polarization: -87.84 SS G_CDS: -2.88 Total: -90.73 kcal Atomic # 8 Polarization: -40.80 SS G_CDS: -0.03 Total: -40.84 kcal Atomic # 14 Polarization: 39.83 SS G_CDS: 2.03 Total: 41.86 kcal Total: -72.40 3.96 -68.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151453469.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.782 kcal (2) G-P(sol) polarization free energy of solvation -72.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds