Wall clock time and date at job start Fri Apr 10 2020 22:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86793 * 120.00271 * 2 1 4 4 H 1.48503 * 109.47211 * 275.39172 * 3 2 1 5 5 H 1.48498 * 109.47080 * 35.39120 * 3 2 1 6 6 H 1.48497 * 109.47409 * 155.39382 * 3 2 1 7 7 C 1.40030 * 119.99646 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00425 * 341.62141 * 7 2 1 9 9 C 1.41557 * 119.99882 * 161.62384 * 7 2 1 10 10 C 1.41188 * 120.99102 * 330.83454 * 9 7 2 11 11 C 1.36554 * 119.14533 * 180.02562 * 10 9 7 12 12 N 1.32098 * 121.26729 * 359.72325 * 11 10 9 13 13 C 1.32526 * 122.21816 * 0.57672 * 12 11 10 14 14 N 1.39081 * 119.66179 * 179.70473 * 13 12 11 15 15 C 1.46493 * 120.00496 * 179.72614 * 14 13 12 16 16 C 1.53000 * 109.47466 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.47222 * 179.97438 * 16 15 14 18 18 C 1.38258 * 119.92737 * 270.02251 * 17 16 15 19 19 C 1.38243 * 120.13710 * 179.74795 * 18 17 16 20 20 C 1.38541 * 120.03155 * 0.43310 * 19 18 17 21 21 C 1.39260 * 119.82651 * 359.56877 * 20 19 18 22 22 C 1.38234 * 119.92783 * 90.00268 * 17 16 15 23 23 O 1.36501 * 108.64072 * 180.25068 * 21 20 19 24 24 C 1.43986 * 105.48403 * 342.71582 * 23 21 20 25 25 O 1.36501 * 131.53210 * 179.87517 * 20 19 18 26 26 C 1.38753 * 120.68237 * 359.42577 * 13 12 11 27 27 H 0.97004 * 119.99948 * 0.02562 * 1 2 3 28 28 H 1.08003 * 120.42628 * 0.02562 * 10 9 7 29 29 H 1.08005 * 119.36966 * 180.02562 * 11 10 9 30 30 H 0.96997 * 119.99544 * 359.72378 * 14 13 12 31 31 H 1.09003 * 109.47095 * 59.99230 * 15 14 13 32 32 H 1.09002 * 109.47311 * 299.99967 * 15 14 13 33 33 H 1.09002 * 109.46755 * 60.00151 * 16 15 14 34 34 H 1.08992 * 109.47183 * 300.00444 * 16 15 14 35 35 H 1.07996 * 119.92900 * 0.02562 * 18 17 16 36 36 H 1.08002 * 119.97653 * 180.32802 * 19 18 17 37 37 H 1.07997 * 119.98642 * 0.02592 * 22 17 16 38 38 H 1.08997 * 110.57571 * 268.54908 * 24 23 21 39 39 H 1.09005 * 110.56910 * 145.67807 * 24 23 21 40 40 H 1.07994 * 120.66383 * 180.30192 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6176 0.0000 4 1 2.3750 2.1121 -1.3939 5 1 1.5005 2.6170 0.8109 6 1 3.5913 1.4099 0.5829 7 6 2.0075 -1.2127 -0.0005 8 1 1.5088 -2.1243 0.2939 9 6 3.3689 -1.2439 -0.3870 10 6 3.8837 -0.3091 -1.3114 11 6 5.2029 -0.3740 -1.6581 12 7 6.0034 -1.2891 -1.1415 13 6 5.5743 -2.1948 -0.2744 14 7 6.4623 -3.1381 0.2317 15 6 5.9975 -4.1389 1.1951 16 6 7.1633 -5.0485 1.5883 17 6 6.6852 -6.0776 2.5799 18 6 6.7400 -5.8077 3.9348 19 6 6.2978 -6.7466 4.8480 20 6 5.8065 -7.9648 4.4073 21 6 5.7514 -8.2366 3.0426 22 6 6.1924 -7.2893 2.1329 23 8 5.2296 -9.4857 2.8673 24 6 5.3465 -10.1343 4.1475 25 8 5.3196 -9.0436 5.0871 26 6 4.2497 -2.2082 0.1383 27 1 -0.4850 0.8401 -0.0004 28 1 3.2424 0.4475 -1.7389 29 1 5.6007 0.3395 -2.3646 30 1 7.3894 -3.1333 -0.0534 31 1 5.2061 -4.7376 0.7439 32 1 5.6122 -3.6373 2.0828 33 1 7.9548 -4.4500 2.0394 34 1 7.5482 -5.5501 0.7005 35 1 7.1250 -4.8596 4.2802 36 1 6.3369 -6.5309 5.9056 37 1 6.1508 -7.4975 1.0740 38 1 6.2893 -10.6768 4.2174 39 1 4.5040 -10.8053 4.3152 40 1 3.9015 -2.9434 0.8486 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154747149.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:41:11 Heat of formation + Delta-G solvation = -26.800992 kcal Electronic energy + Delta-G solvation = -24012.286862 eV Core-core repulsion = 20370.713489 eV Total energy + Delta-G solvation = -3641.573374 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.14164 -40.54652 -39.41896 -37.31203 -37.05161 -35.75509 -33.58007 -33.01900 -31.47625 -30.48673 -28.50550 -27.84461 -26.65476 -24.85787 -23.98710 -23.18694 -22.85651 -22.12010 -19.63425 -18.91517 -18.53720 -18.37289 -17.87659 -17.26043 -17.19522 -16.53581 -16.08502 -16.05596 -15.47749 -15.34522 -15.22201 -14.90582 -14.87300 -14.69138 -14.44492 -14.23582 -14.01572 -13.85698 -13.38932 -13.03957 -12.92438 -12.76388 -12.69679 -12.51043 -12.31721 -11.97661 -11.66742 -11.64185 -11.23231 -10.70145 -10.08968 -9.92483 -9.86265 -9.04487 -8.95728 -8.36960 -6.68900 0.07256 0.20488 0.78329 0.96854 1.29324 1.44079 1.51973 1.77975 2.13757 2.35297 2.51744 2.63353 2.69099 3.46889 3.61478 3.78585 3.84270 3.98333 4.06165 4.11458 4.17733 4.24069 4.29348 4.33432 4.54442 4.61112 4.64744 4.74662 4.85179 4.89360 4.93583 5.03268 5.06938 5.14169 5.23411 5.28563 5.42519 5.42982 5.55068 5.76522 5.92945 6.10863 6.24375 6.35994 6.65773 6.77560 6.98439 7.73348 8.12008 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.017791 B = 0.002733 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.418655 B =10243.647821 C =11093.941231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.054 3.946 3 Si 0.973 3.027 4 H -0.250 1.250 5 H -0.276 1.276 6 H -0.259 1.259 7 C -0.479 4.479 8 H 0.056 0.944 9 C 0.124 3.876 10 C -0.335 4.335 11 C 0.153 3.847 12 N -0.622 5.622 13 C 0.409 3.591 14 N -0.726 5.726 15 C 0.141 3.859 16 C -0.071 4.071 17 C -0.069 4.069 18 C -0.099 4.099 19 C -0.102 4.102 20 C 0.009 3.991 21 C 0.011 3.989 22 C -0.104 4.104 23 O -0.329 6.329 24 C 0.205 3.795 25 O -0.326 6.326 26 C -0.343 4.343 27 H 0.297 0.703 28 H 0.108 0.892 29 H 0.163 0.837 30 H 0.405 0.595 31 H 0.044 0.956 32 H 0.053 0.947 33 H 0.105 0.895 34 H 0.094 0.906 35 H 0.164 0.836 36 H 0.154 0.846 37 H 0.141 0.859 38 H 0.106 0.894 39 H 0.157 0.843 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.906 -13.660 8.555 21.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.163 4.163 3 Si 0.796 3.204 4 H -0.175 1.175 5 H -0.202 1.202 6 H -0.183 1.183 7 C -0.510 4.510 8 H 0.074 0.926 9 C 0.115 3.885 10 C -0.360 4.360 11 C 0.000 4.000 12 N -0.345 5.345 13 C 0.177 3.823 14 N -0.361 5.361 15 C 0.017 3.983 16 C -0.109 4.109 17 C -0.070 4.070 18 C -0.117 4.117 19 C -0.121 4.121 20 C -0.035 4.035 21 C -0.033 4.033 22 C -0.123 4.123 23 O -0.246 6.246 24 C 0.094 3.906 25 O -0.243 6.243 26 C -0.370 4.370 27 H 0.108 0.892 28 H 0.126 0.874 29 H 0.180 0.820 30 H 0.241 0.759 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.123 0.877 34 H 0.113 0.887 35 H 0.181 0.819 36 H 0.172 0.828 37 H 0.159 0.841 38 H 0.123 0.877 39 H 0.174 0.826 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 15.215 -13.892 8.494 22.285 hybrid contribution -1.286 0.022 0.197 1.301 sum 13.929 -13.870 8.692 21.493 Atomic orbital electron populations 1.69676 1.09285 1.31903 1.35493 1.26870 0.95313 1.04403 0.89741 0.85389 0.79179 0.75986 0.79878 1.17537 1.20226 1.18336 1.19467 0.94217 0.95795 1.41507 0.92551 1.17885 0.92329 0.90320 0.87924 1.21614 0.98383 1.07594 1.08392 1.21896 0.89404 0.93711 0.94969 1.67019 1.39132 1.09736 1.18642 1.18211 0.87504 0.87701 0.88912 1.44176 1.11061 1.32167 1.48723 1.21227 0.96979 0.88864 0.91263 1.20616 0.97038 0.94694 0.98503 1.19507 0.99286 0.93457 0.94761 1.21206 0.99346 0.99683 0.91441 1.20396 0.99511 0.89950 1.02215 1.20128 1.01528 0.92449 0.89409 1.20002 1.01021 0.88255 0.94045 1.20190 1.00300 0.92215 0.99558 1.87331 1.78243 1.24209 1.34819 1.26092 1.06341 0.88050 0.70112 1.87316 1.80638 1.18620 1.37724 1.21253 0.93357 1.09732 1.12631 0.89189 0.87435 0.81960 0.75861 0.93772 0.92882 0.87655 0.88746 0.81867 0.82809 0.84090 0.87656 0.82567 0.87845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.58 13.92 21.84 0.30 -45.28 16 2 C 0.05 2.88 5.42 85.29 0.46 3.34 16 3 Si 0.97 42.76 24.54 68.60 1.68 44.44 16 4 H -0.25 -10.21 6.70 99.48 0.67 -9.55 16 5 H -0.28 -11.27 7.11 99.48 0.71 -10.57 16 6 H -0.26 -11.89 6.85 99.48 0.68 -11.20 16 7 C -0.48 -27.34 9.63 23.52 0.23 -27.11 16 8 H 0.06 3.47 8.06 -2.91 -0.02 3.44 16 9 C 0.12 6.52 5.13 -21.12 -0.11 6.41 16 10 C -0.34 -16.12 7.24 22.60 0.16 -15.96 16 11 C 0.15 6.56 11.10 84.26 0.94 7.50 16 12 N -0.62 -26.90 10.37 -194.46 -2.02 -28.92 16 13 C 0.41 17.39 7.65 132.91 1.02 18.41 16 14 N -0.73 -22.97 5.73 -345.25 -1.98 -24.95 16 15 C 0.14 3.73 4.87 86.38 0.42 4.15 16 16 C -0.07 -1.22 5.45 29.85 0.16 -1.06 16 17 C -0.07 -1.31 5.13 -19.86 -0.10 -1.41 16 18 C -0.10 -1.70 9.69 22.28 0.22 -1.48 16 19 C -0.10 -1.93 10.06 22.34 0.22 -1.70 16 20 C 0.01 0.21 7.15 22.59 0.16 0.37 16 21 C 0.01 0.26 7.15 22.59 0.16 0.42 16 22 C -0.10 -2.25 9.71 22.34 0.22 -2.03 16 23 O -0.33 -7.58 11.40 -76.07 -0.87 -8.45 16 24 C 0.20 3.17 8.89 113.37 1.01 4.17 16 25 O -0.33 -7.09 11.40 -76.06 -0.87 -7.95 16 26 C -0.34 -16.57 9.12 23.01 0.21 -16.36 16 27 H 0.30 14.38 8.29 -92.71 -0.77 13.61 16 28 H 0.11 5.03 4.76 -2.91 -0.01 5.01 16 29 H 0.16 5.62 8.06 -2.91 -0.02 5.60 16 30 H 0.41 10.86 8.60 -92.71 -0.80 10.06 16 31 H 0.04 1.31 7.93 -2.39 -0.02 1.30 16 32 H 0.05 1.50 7.93 -2.39 -0.02 1.48 16 33 H 0.11 1.41 8.08 -2.39 -0.02 1.39 16 34 H 0.09 1.42 8.08 -2.39 -0.02 1.40 16 35 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 36 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 37 H 0.14 2.78 8.06 -2.91 -0.02 2.75 16 38 H 0.11 1.08 8.14 -2.39 -0.02 1.07 16 39 H 0.16 1.42 8.14 -2.38 -0.02 1.40 16 40 H 0.10 4.88 6.71 -2.91 -0.02 4.86 16 Total: -1.00 -69.10 338.39 1.86 -67.24 By element: Atomic # 1 Polarization: 25.99 SS G_CDS: 0.22 Total: 26.22 kcal Atomic # 6 Polarization: -27.73 SS G_CDS: 5.38 Total: -22.35 kcal Atomic # 7 Polarization: -95.45 SS G_CDS: -3.69 Total: -99.14 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -1.73 Total: -16.40 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 1.68 Total: 44.44 kcal Total: -69.10 1.86 -67.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154747149.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.439 kcal (2) G-P(sol) polarization free energy of solvation -69.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds