Wall clock time and date at job start Fri Apr 10 2020 22:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35539 * 116.99701 * 2 1 4 4 N 1.32897 * 120.43095 * 359.97438 * 3 2 1 5 5 C 1.32464 * 120.78554 * 180.02562 * 4 3 2 6 6 N 1.38386 * 119.15516 * 179.97438 * 5 4 3 7 7 C 1.46492 * 120.00030 * 180.02562 * 6 5 4 8 8 C 1.53002 * 109.47516 * 179.97438 * 7 6 5 9 9 C 1.52992 * 109.47606 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.47416 * 180.02562 * 9 8 7 11 11 H 1.07997 * 119.99752 * 359.97438 * 10 9 8 12 12 C 1.37881 * 120.00162 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99916 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99940 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47198 * 0.02562 * 14 12 10 16 16 H 1.48505 * 109.46799 * 119.99580 * 14 12 10 17 17 H 1.48496 * 109.47021 * 239.99786 * 14 12 10 18 18 N 1.32455 * 121.68664 * 0.02562 * 5 4 3 19 19 C 1.32904 * 120.78872 * 359.97438 * 18 5 4 20 20 O 1.35532 * 120.42855 * 180.02562 * 19 18 5 21 21 C 1.42898 * 117.00205 * 359.97438 * 20 19 18 22 22 C 1.39027 * 119.13994 * 0.02562 * 19 18 5 23 23 N 1.48023 * 120.77090 * 180.02562 * 22 19 18 24 24 O 1.21797 * 120.00436 * 89.99731 * 23 22 19 25 25 O 1.21806 * 119.99822 * 269.99520 * 23 22 19 26 26 H 1.08999 * 109.46898 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46938 * 299.99841 * 1 2 3 28 28 H 1.09005 * 109.47043 * 59.99941 * 1 2 3 29 29 H 0.97004 * 120.00266 * 359.97438 * 6 5 4 30 30 H 1.09007 * 109.47279 * 300.00053 * 7 6 5 31 31 H 1.09002 * 109.47386 * 60.00032 * 7 6 5 32 32 H 1.09003 * 109.46489 * 300.00152 * 8 7 6 33 33 H 1.09002 * 109.46728 * 59.99677 * 8 7 6 34 34 H 1.09007 * 109.47410 * 300.00236 * 9 8 7 35 35 H 1.09007 * 109.47075 * 59.99680 * 9 8 7 36 36 H 0.96993 * 120.00080 * 180.02562 * 13 12 10 37 37 H 1.09008 * 109.46949 * 300.00089 * 21 20 19 38 38 H 1.09001 * 109.47415 * 59.99863 * 21 20 19 39 39 H 1.09000 * 109.47615 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2077 0.0000 4 7 1.3288 2.3276 -0.0005 5 6 1.9228 3.5116 -0.0010 6 7 1.1449 4.6562 -0.0021 7 6 1.7824 5.9751 -0.0032 8 6 0.7057 7.0621 -0.0049 9 6 1.3715 8.4396 -0.0055 10 6 0.3109 9.5102 -0.0065 11 1 -0.7335 9.2356 -0.0071 12 6 0.6740 10.8403 -0.0077 13 7 1.9460 11.1747 -0.0074 14 14 -0.6406 12.1674 -0.0096 15 1 -1.9836 11.5337 -0.0090 16 1 -0.4923 13.0128 1.2022 17 1 -0.4911 13.0105 -1.2229 18 7 3.2422 3.6281 -0.0016 19 6 4.0203 2.5506 -0.0011 20 8 5.3696 2.6782 -0.0011 21 6 5.8956 4.0069 -0.0022 22 6 3.4321 1.2909 -0.0005 23 7 4.2642 0.0666 0.0006 24 8 4.6061 -0.4364 1.0558 25 8 4.6069 -0.4377 -1.0539 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 0.1775 4.5851 -0.0028 30 1 2.4032 6.0794 0.8867 31 1 2.4032 6.0779 -0.8933 32 1 0.0854 6.9576 -0.8951 33 1 0.0845 6.9595 0.8849 34 1 1.9916 8.5438 0.8849 35 1 1.9930 8.5424 -0.8951 36 1 2.2014 12.1104 -0.0078 37 1 5.5515 4.5331 -0.8928 38 1 5.5515 4.5347 0.8873 39 1 6.9848 3.9665 -0.0026 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157641164.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:41:16 Heat of formation + Delta-G solvation = -26.201213 kcal Electronic energy + Delta-G solvation = -25540.690296 eV Core-core repulsion = 21488.293668 eV Total energy + Delta-G solvation = -4052.396628 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.45344 -41.41016 -39.84008 -38.82870 -36.52173 -36.41650 -33.92001 -33.29254 -32.41828 -31.01495 -28.60038 -27.58585 -27.28194 -25.61964 -24.13305 -23.53049 -22.62322 -20.80024 -19.74170 -19.40711 -19.24916 -18.79498 -17.67749 -17.11176 -16.94006 -16.51215 -16.40213 -16.30753 -15.34301 -15.19916 -15.00657 -14.55954 -14.29494 -14.27046 -12.99616 -12.62320 -12.48098 -12.40006 -12.33317 -12.29238 -12.00845 -11.76708 -11.59304 -11.06611 -11.03854 -11.00664 -10.92624 -10.67154 -10.30846 -10.29581 -10.08793 -9.97536 -9.67480 -9.27737 -8.69906 -8.50529 -6.15283 -4.18718 0.37227 0.57814 0.62201 1.33359 1.73245 2.45466 2.64221 3.12595 3.21325 3.29593 3.32523 3.49139 4.04977 4.27340 4.33445 4.56040 4.77904 4.83796 4.92732 5.01165 5.15912 5.21260 5.33199 5.34641 5.46161 5.84316 6.03994 6.09177 6.18630 6.29802 6.32418 6.51704 6.62877 6.76222 6.98711 7.46126 7.56270 7.66276 7.71752 7.82286 8.22532 8.87665 9.46549 10.95943 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.021923 B = 0.002672 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.881325 B =10477.176204 C =11599.462237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.292 6.292 3 C 0.481 3.519 4 N -0.623 5.623 5 C 0.651 3.349 6 N -0.662 5.662 7 C 0.124 3.876 8 C -0.123 4.123 9 C 0.027 3.973 10 C -0.525 4.525 11 H 0.056 0.944 12 C 0.058 3.942 13 N -0.893 5.893 14 Si 0.893 3.107 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.283 1.283 18 N -0.610 5.610 19 C 0.482 3.518 20 O -0.292 6.292 21 C 0.035 3.965 22 C -0.249 4.249 23 N 0.053 4.947 24 O -0.139 6.139 25 O -0.140 6.140 26 H 0.108 0.892 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.421 0.579 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.020 0.980 35 H 0.020 0.980 36 H 0.262 0.738 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.169 -19.352 0.013 19.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.194 6.194 3 C 0.290 3.710 4 N -0.368 5.368 5 C 0.294 3.706 6 N -0.293 5.293 7 C 0.001 3.999 8 C -0.162 4.162 9 C -0.011 4.011 10 C -0.563 4.563 11 H 0.075 0.925 12 C -0.144 4.144 13 N -0.532 5.532 14 Si 0.721 3.279 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.209 1.209 18 N -0.356 5.356 19 C 0.291 3.709 20 O -0.194 6.194 21 C -0.059 4.059 22 C -0.342 4.342 23 N 0.584 4.416 24 O -0.363 6.363 25 O -0.363 6.363 26 H 0.126 0.874 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.260 0.740 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.038 0.962 35 H 0.038 0.962 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.706 -17.983 0.012 17.997 hybrid contribution -0.626 0.215 -0.001 0.662 sum 0.080 -17.768 0.011 17.769 Atomic orbital electron populations 1.23162 0.74582 1.04280 1.03713 1.86306 1.25223 1.22556 1.85353 1.18543 0.85041 0.85682 0.81780 1.67855 1.38265 0.96721 1.34005 1.18632 0.84007 0.85394 0.82575 1.44954 1.08960 1.02515 1.72896 1.21940 0.97087 0.78048 1.02778 1.21960 0.96920 0.95898 1.01385 1.19014 0.96099 0.88274 0.97726 1.21203 0.92962 0.90913 1.51222 0.92537 1.25020 0.95376 0.98882 0.95088 1.69957 1.15313 1.17521 1.50389 0.86517 0.81885 0.81792 0.77701 1.19728 1.20925 1.20921 1.67941 1.05257 1.29200 1.33207 1.18624 0.85434 0.85477 0.81391 1.86295 1.14003 1.33997 1.85060 1.23223 0.99298 0.79255 1.04137 1.19974 0.89266 0.85168 1.39746 1.42607 0.98551 1.00260 1.00132 1.94524 1.57279 1.63473 1.20995 1.94526 1.57252 1.63388 1.21112 0.87370 0.91043 0.91035 0.74048 0.90866 0.90875 0.92355 0.92356 0.96179 0.96181 0.92871 0.90772 0.90765 0.87250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.41 101.05 1.05 1.33 16 2 O -0.29 -3.44 10.30 -18.31 -0.19 -3.63 16 3 C 0.48 6.39 7.52 -16.80 -0.13 6.27 16 4 N -0.62 -7.90 9.39 -14.06 -0.13 -8.03 16 5 C 0.65 8.67 8.42 -322.92 -2.72 5.95 16 6 N -0.66 -8.17 5.70 -62.33 -0.36 -8.52 16 7 C 0.12 1.76 5.64 -4.05 -0.02 1.74 16 8 C -0.12 -2.10 5.27 -26.73 -0.14 -2.24 16 9 C 0.03 0.61 4.97 -27.89 -0.14 0.47 16 10 C -0.52 -13.78 9.11 -34.44 -0.31 -14.10 16 11 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 12 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 13 N -0.89 -25.46 13.29 55.43 0.74 -24.72 16 14 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 15 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 N -0.61 -8.40 8.52 -14.06 -0.12 -8.52 16 19 C 0.48 6.73 7.52 -16.80 -0.13 6.61 16 20 O -0.29 -3.75 10.30 -18.29 -0.19 -3.93 16 21 C 0.03 0.33 10.41 101.05 1.05 1.38 16 22 C -0.25 -3.62 6.25 -79.36 -0.50 -4.11 16 23 N 0.05 0.83 3.98 34.25 0.14 0.96 16 24 O -0.14 -2.20 19.25 -29.46 -0.57 -2.77 16 25 O -0.14 -2.21 19.26 -29.46 -0.57 -2.77 16 26 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 28 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 29 H 0.42 4.46 8.59 -40.82 -0.35 4.10 16 30 H 0.07 1.08 8.14 -51.92 -0.42 0.65 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.02 0.49 8.14 -51.92 -0.42 0.07 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 37 H 0.07 0.70 8.12 -51.92 -0.42 0.28 16 38 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 39 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 354.07 15.07 5.34 5.34 Total: -1.00 -30.72 354.07 -7.97 -38.69 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: -4.96 Total: -2.43 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: -2.08 Total: 4.76 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: 0.27 Total: -48.83 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: -1.51 Total: -13.11 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.72 -7.97 -38.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157641164.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.492 kcal (2) G-P(sol) polarization free energy of solvation -30.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds