Wall clock time and date at job start Fri Apr 10 2020 22:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30899 * 1 3 3 Si 1.86802 * 120.00027 * 2 1 4 4 H 1.48498 * 109.47160 * 270.00086 * 3 2 1 5 5 H 1.48498 * 109.47152 * 29.99943 * 3 2 1 6 6 H 1.48500 * 109.47097 * 150.00205 * 3 2 1 7 7 C 1.39871 * 119.99690 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99775 * 163.31278 * 7 2 1 9 9 C 1.41195 * 120.00288 * 343.31174 * 7 2 1 10 10 C 1.41321 * 120.57145 * 335.69473 * 9 7 2 11 11 C 1.36564 * 118.40974 * 179.77062 * 10 9 7 12 12 C 1.39708 * 119.49168 * 0.49210 * 11 10 9 13 13 N 1.38370 * 119.42681 * 179.76669 * 12 11 10 14 14 C 1.46499 * 120.00515 * 359.73176 * 13 12 11 15 15 C 1.52993 * 109.47145 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.46843 * 179.97438 * 15 14 13 17 17 C 1.38254 * 119.93420 * 270.02269 * 16 15 14 18 18 C 1.38235 * 120.14650 * 179.75181 * 17 16 15 19 19 C 1.38544 * 120.02789 * 0.42993 * 18 17 16 20 20 C 1.39273 * 119.82914 * 359.56758 * 19 18 17 21 21 C 1.38239 * 119.92495 * 90.00465 * 16 15 14 22 22 O 1.36499 * 108.64369 * 180.24861 * 20 19 18 23 23 C 1.43988 * 105.48431 * 342.72420 * 22 20 19 24 24 O 1.36504 * 131.53560 * 179.88454 * 19 18 17 25 25 N 1.32734 * 121.13725 * 359.49357 * 12 11 10 26 26 C 1.31489 * 121.73480 * 0.25004 * 25 12 11 27 27 H 0.97003 * 120.00280 * 359.97438 * 1 2 3 28 28 H 1.08003 * 120.79132 * 0.03884 * 10 9 7 29 29 H 1.08007 * 120.25168 * 180.26135 * 11 10 9 30 30 H 0.97001 * 119.99237 * 179.73077 * 13 12 11 31 31 H 1.09000 * 109.46666 * 59.99649 * 14 13 12 32 32 H 1.09006 * 109.46812 * 299.99942 * 14 13 12 33 33 H 1.09005 * 109.47120 * 60.00033 * 15 14 13 34 34 H 1.08992 * 109.47382 * 299.99781 * 15 14 13 35 35 H 1.08003 * 119.92316 * 0.02562 * 17 16 15 36 36 H 1.07992 * 119.98457 * 180.33270 * 18 17 16 37 37 H 1.08005 * 119.98692 * 0.02562 * 21 16 15 38 38 H 1.09001 * 110.57321 * 268.55114 * 23 22 20 39 39 H 1.09003 * 110.56952 * 145.67892 * 23 22 20 40 40 H 1.07996 * 119.81681 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.4905 2.0464 -1.4001 5 1 1.4405 2.6527 0.7000 6 1 3.5406 1.4402 0.7000 7 6 2.0083 -1.2114 0.0005 8 1 3.0542 -1.2312 -0.2680 9 6 1.3469 -2.4082 0.3522 10 6 0.1947 -2.3792 1.1699 11 6 -0.4128 -3.5626 1.4788 12 6 0.1219 -4.7579 0.9918 13 7 -0.4919 -5.9566 1.3097 14 6 -1.6884 -5.9655 2.1550 15 6 -2.1638 -7.4064 2.3507 16 6 -3.3943 -7.4155 3.2208 17 6 -3.2675 -7.5145 4.5940 18 6 -4.3930 -7.5181 5.3966 19 6 -5.6522 -7.4314 4.8253 20 6 -5.7800 -7.3316 3.4421 21 6 -4.6473 -7.3245 2.6442 22 8 -7.1068 -7.2546 3.1309 23 6 -7.8039 -7.7186 4.3022 24 8 -6.8990 -7.4168 5.3808 25 7 1.2053 -4.7630 0.2250 26 6 1.8241 -3.6509 -0.1053 27 1 -0.4851 0.8400 0.0004 28 1 -0.1986 -1.4431 1.5380 29 1 -1.2977 -3.5747 2.0980 30 1 -0.1299 -6.7911 0.9727 31 1 -2.4765 -5.3852 1.6751 32 1 -1.4519 -5.5257 3.1239 33 1 -1.3758 -7.9871 2.8303 34 1 -2.4004 -7.8458 1.3817 35 1 -2.2867 -7.5847 5.0408 36 1 -4.2907 -7.5901 6.4692 37 1 -4.7435 -7.2475 1.5712 38 1 -7.9828 -8.7921 4.2413 39 1 -8.7429 -7.1794 4.4277 40 1 2.7032 -3.6910 -0.7314 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162082939.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:41:18 Heat of formation + Delta-G solvation = -5.276545 kcal Electronic energy + Delta-G solvation = -23779.618513 eV Core-core repulsion = 20138.978509 eV Total energy + Delta-G solvation = -3640.640004 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.39088 -38.82357 -38.32787 -36.53018 -35.56924 -33.79397 -32.14242 -30.68360 -30.55099 -29.30654 -27.80136 -26.00855 -24.75157 -23.40011 -23.20024 -22.11885 -21.19951 -20.49991 -18.17473 -17.79093 -17.62030 -17.23749 -16.61980 -16.15379 -15.48139 -15.07242 -14.97272 -14.70364 -14.20492 -14.08398 -13.82991 -13.74263 -13.53205 -13.22842 -13.05446 -12.85471 -12.52996 -12.16805 -11.87237 -11.77048 -11.51712 -11.38847 -11.26939 -11.07021 -11.01351 -10.87442 -10.54106 -9.76557 -9.38456 -9.07059 -8.70258 -8.24969 -8.20900 -7.99507 -6.81298 -6.58427 -4.16689 0.88503 0.99291 2.49363 2.78324 3.00989 3.10343 3.15010 3.16560 3.31218 3.31354 3.97643 4.09042 4.24413 4.34983 4.56720 4.71735 4.74579 4.84429 4.91916 5.00850 5.17022 5.20362 5.32434 5.58385 5.75889 5.80115 5.85634 5.97679 6.03031 6.03484 6.15780 6.21153 6.37566 6.52488 6.66805 6.87871 6.89491 7.20146 7.35664 7.44681 7.78439 7.94553 8.28786 8.45765 8.68269 8.87308 8.94537 9.74107 10.26231 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.020700 B = 0.002346 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.347124 B =11932.790032 C =12721.910782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.073 3.927 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.457 4.457 8 H 0.077 0.923 9 C 0.029 3.971 10 C -0.094 4.094 11 C -0.202 4.202 12 C 0.278 3.722 13 N -0.746 5.746 14 C 0.149 3.851 15 C -0.087 4.087 16 C -0.063 4.063 17 C -0.103 4.103 18 C -0.097 4.097 19 C 0.023 3.977 20 C 0.032 3.968 21 C -0.094 4.094 22 O -0.309 6.309 23 C 0.213 3.787 24 O -0.311 6.311 25 N -0.523 5.523 26 C 0.011 3.989 27 H 0.279 0.721 28 H 0.127 0.873 29 H 0.097 0.903 30 H 0.389 0.611 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.140 0.860 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.082 0.918 39 H 0.130 0.870 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.516 -14.058 9.415 21.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.143 4.143 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.488 4.488 8 H 0.095 0.905 9 C 0.024 3.976 10 C -0.120 4.120 11 C -0.226 4.226 12 C 0.046 3.954 13 N -0.386 5.386 14 C 0.023 3.977 15 C -0.125 4.125 16 C -0.064 4.064 17 C -0.121 4.121 18 C -0.116 4.116 19 C -0.021 4.021 20 C -0.012 4.012 21 C -0.112 4.112 22 O -0.225 6.225 23 C 0.102 3.898 24 O -0.228 6.228 25 N -0.238 5.238 26 C -0.147 4.147 27 H 0.089 0.911 28 H 0.145 0.855 29 H 0.115 0.885 30 H 0.222 0.778 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.158 0.842 36 H 0.153 0.847 37 H 0.155 0.845 38 H 0.100 0.900 39 H 0.148 0.852 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -12.728 -14.451 9.223 21.352 hybrid contribution -0.332 1.359 0.162 1.408 sum -13.060 -13.092 9.386 20.738 Atomic orbital electron populations 1.69816 1.07476 1.28987 1.37055 1.25854 0.94724 1.01175 0.92531 0.86329 0.80555 0.80793 0.79114 1.19618 1.20268 1.18576 1.19307 0.97559 0.90853 1.41085 0.90452 1.18361 0.93438 0.93591 0.92198 1.21319 0.97097 0.96542 0.97072 1.20823 1.02331 0.92841 1.06648 1.17729 0.93059 0.85236 0.99410 1.43566 1.30692 1.05676 1.58702 1.20964 0.87689 0.94412 0.94613 1.20738 0.94280 0.98043 0.99414 1.19490 0.93524 0.99413 0.93953 1.20889 0.98193 1.00440 0.92610 1.20062 0.87798 1.02876 1.00853 1.19820 0.87007 1.04745 0.90530 1.19764 0.84908 1.03875 0.92640 1.20006 0.88299 1.02872 1.00074 1.87378 1.14604 1.82629 1.37924 1.25606 0.92546 1.00312 0.71385 1.87354 1.13918 1.87581 1.33901 1.66515 1.08922 1.32913 1.15477 1.22186 1.01528 0.87336 1.03679 0.91055 0.85487 0.88519 0.77804 0.93028 0.92973 0.89882 0.90086 0.84187 0.84694 0.84517 0.90003 0.85245 0.85573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.96 10.91 55.54 0.61 -20.36 16 2 C 0.07 1.84 5.19 -17.34 -0.09 1.75 16 3 Si 0.91 18.77 29.59 -169.99 -5.03 13.74 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 6 H -0.26 -5.37 7.11 56.52 0.40 -4.96 16 7 C -0.46 -12.09 9.07 -37.85 -0.34 -12.43 16 8 H 0.08 1.95 7.90 -52.49 -0.41 1.54 16 9 C 0.03 0.78 5.59 -106.65 -0.60 0.19 16 10 C -0.09 -2.43 8.74 -39.01 -0.34 -2.78 16 11 C -0.20 -4.76 9.24 -39.64 -0.37 -5.13 16 12 C 0.28 6.33 7.64 -155.13 -1.19 5.15 16 13 N -0.75 -13.19 5.70 -60.36 -0.34 -13.53 16 14 C 0.15 2.10 4.85 -4.05 -0.02 2.08 16 15 C -0.09 -0.89 5.45 -27.89 -0.15 -1.04 16 16 C -0.06 -0.65 5.13 -104.61 -0.54 -1.18 16 17 C -0.10 -0.97 9.69 -39.58 -0.38 -1.35 16 18 C -0.10 -0.95 10.06 -39.47 -0.40 -1.35 16 19 C 0.02 0.26 7.15 -39.08 -0.28 -0.02 16 20 C 0.03 0.38 7.15 -39.08 -0.28 0.10 16 21 C -0.09 -1.04 9.71 -39.47 -0.38 -1.42 16 22 O -0.31 -3.51 11.40 -45.69 -0.52 -4.03 16 23 C 0.21 1.69 8.89 101.05 0.90 2.59 16 24 O -0.31 -3.37 11.40 -45.70 -0.52 -3.89 16 25 N -0.52 -12.84 10.37 -11.79 -0.12 -12.96 16 26 C 0.01 0.27 10.97 -16.75 -0.18 0.09 16 27 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 28 H 0.13 3.38 6.20 -52.48 -0.33 3.06 16 29 H 0.10 2.04 6.64 -52.48 -0.35 1.69 16 30 H 0.39 6.27 8.59 -40.82 -0.35 5.92 16 31 H 0.05 0.78 7.89 -51.93 -0.41 0.37 16 32 H 0.05 0.76 7.91 -51.93 -0.41 0.34 16 33 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 34 H 0.08 0.78 8.08 -51.93 -0.42 0.36 16 35 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 36 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 37 H 0.14 1.38 8.06 -52.48 -0.42 0.96 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.13 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.13 2.98 8.06 -52.49 -0.42 2.55 16 LS Contribution 343.34 15.07 5.17 5.17 Total: -1.00 -30.86 343.34 -10.17 -41.03 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -4.77 Total: 9.59 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: -4.64 Total: -14.75 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: 0.14 Total: -46.85 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -1.04 Total: -7.92 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.86 -10.17 -41.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162082939.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.754 kcal (2) G-P(sol) polarization free energy of solvation -30.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds