Wall clock time and date at job start Fri Apr 10 2020 22:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30899 * 1 3 3 Si 1.86802 * 120.00027 * 2 1 4 4 H 1.48498 * 109.47160 * 270.00086 * 3 2 1 5 5 H 1.48498 * 109.47152 * 29.99943 * 3 2 1 6 6 H 1.48500 * 109.47097 * 150.00205 * 3 2 1 7 7 C 1.39871 * 119.99690 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99775 * 163.31278 * 7 2 1 9 9 C 1.41195 * 120.00288 * 343.31174 * 7 2 1 10 10 C 1.41321 * 120.57145 * 335.69473 * 9 7 2 11 11 C 1.36564 * 118.40974 * 179.77062 * 10 9 7 12 12 C 1.39708 * 119.49168 * 0.49210 * 11 10 9 13 13 N 1.38370 * 119.42681 * 179.76669 * 12 11 10 14 14 C 1.46499 * 120.00515 * 359.73176 * 13 12 11 15 15 C 1.52993 * 109.47145 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.46843 * 179.97438 * 15 14 13 17 17 C 1.38254 * 119.93420 * 270.02269 * 16 15 14 18 18 C 1.38235 * 120.14650 * 179.75181 * 17 16 15 19 19 C 1.38544 * 120.02789 * 0.42993 * 18 17 16 20 20 C 1.39273 * 119.82914 * 359.56758 * 19 18 17 21 21 C 1.38239 * 119.92495 * 90.00465 * 16 15 14 22 22 O 1.36499 * 108.64369 * 180.24861 * 20 19 18 23 23 C 1.43988 * 105.48431 * 342.72420 * 22 20 19 24 24 O 1.36504 * 131.53560 * 179.88454 * 19 18 17 25 25 N 1.32734 * 121.13725 * 359.49357 * 12 11 10 26 26 C 1.31489 * 121.73480 * 0.25004 * 25 12 11 27 27 H 0.97003 * 120.00280 * 359.97438 * 1 2 3 28 28 H 1.08003 * 120.79132 * 0.03884 * 10 9 7 29 29 H 1.08007 * 120.25168 * 180.26135 * 11 10 9 30 30 H 0.97001 * 119.99237 * 179.73077 * 13 12 11 31 31 H 1.09000 * 109.46666 * 59.99649 * 14 13 12 32 32 H 1.09006 * 109.46812 * 299.99942 * 14 13 12 33 33 H 1.09005 * 109.47120 * 60.00033 * 15 14 13 34 34 H 1.08992 * 109.47382 * 299.99781 * 15 14 13 35 35 H 1.08003 * 119.92316 * 0.02562 * 17 16 15 36 36 H 1.07992 * 119.98457 * 180.33270 * 18 17 16 37 37 H 1.08005 * 119.98692 * 0.02562 * 21 16 15 38 38 H 1.09001 * 110.57321 * 268.55114 * 23 22 20 39 39 H 1.09003 * 110.56952 * 145.67892 * 23 22 20 40 40 H 1.07996 * 119.81681 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.4905 2.0464 -1.4001 5 1 1.4405 2.6527 0.7000 6 1 3.5406 1.4402 0.7000 7 6 2.0083 -1.2114 0.0005 8 1 3.0542 -1.2312 -0.2680 9 6 1.3469 -2.4082 0.3522 10 6 0.1947 -2.3792 1.1699 11 6 -0.4128 -3.5626 1.4788 12 6 0.1219 -4.7579 0.9918 13 7 -0.4919 -5.9566 1.3097 14 6 -1.6884 -5.9655 2.1550 15 6 -2.1638 -7.4064 2.3507 16 6 -3.3943 -7.4155 3.2208 17 6 -3.2675 -7.5145 4.5940 18 6 -4.3930 -7.5181 5.3966 19 6 -5.6522 -7.4314 4.8253 20 6 -5.7800 -7.3316 3.4421 21 6 -4.6473 -7.3245 2.6442 22 8 -7.1068 -7.2546 3.1309 23 6 -7.8039 -7.7186 4.3022 24 8 -6.8990 -7.4168 5.3808 25 7 1.2053 -4.7630 0.2250 26 6 1.8241 -3.6509 -0.1053 27 1 -0.4851 0.8400 0.0004 28 1 -0.1986 -1.4431 1.5380 29 1 -1.2977 -3.5747 2.0980 30 1 -0.1299 -6.7911 0.9727 31 1 -2.4765 -5.3852 1.6751 32 1 -1.4519 -5.5257 3.1239 33 1 -1.3758 -7.9871 2.8303 34 1 -2.4004 -7.8458 1.3817 35 1 -2.2867 -7.5847 5.0408 36 1 -4.2907 -7.5901 6.4692 37 1 -4.7435 -7.2475 1.5712 38 1 -7.9828 -8.7921 4.2413 39 1 -8.7429 -7.1794 4.4277 40 1 2.7032 -3.6910 -0.7314 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162082939.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:41:17 Heat of formation + Delta-G solvation = -22.989794 kcal Electronic energy + Delta-G solvation = -23780.386617 eV Core-core repulsion = 20138.978509 eV Total energy + Delta-G solvation = -3641.408108 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.13135 -40.40848 -39.39057 -37.30198 -37.01769 -35.52777 -33.32195 -32.47283 -31.47380 -30.89600 -28.98460 -26.89727 -26.27920 -24.68982 -23.97271 -23.66764 -22.56245 -22.05254 -19.17530 -18.91481 -18.65307 -18.35997 -17.97422 -17.26675 -16.96861 -16.75346 -16.00839 -15.52842 -15.46412 -15.30937 -15.06639 -14.86100 -14.74638 -14.41500 -14.13594 -14.00666 -13.84590 -13.64175 -13.45308 -13.12021 -12.88905 -12.83696 -12.73706 -12.39891 -12.19450 -11.96935 -11.66538 -11.61404 -11.18538 -10.42646 -10.14453 -9.92398 -9.84971 -9.03334 -8.65817 -8.39157 -6.11838 0.08631 0.21629 0.90456 1.13276 1.42223 1.53495 1.59549 1.78857 2.25581 2.44851 2.52788 2.75583 2.83671 3.47791 3.79399 3.80898 3.87738 4.00423 4.08312 4.16300 4.23383 4.27038 4.30393 4.36327 4.55975 4.65962 4.67207 4.79059 4.94895 4.97231 5.04565 5.08362 5.15945 5.24912 5.29842 5.42520 5.44471 5.57194 5.59676 5.89609 6.00187 6.11945 6.49607 6.65159 6.85726 6.94240 7.18278 7.86134 8.40913 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.020700 B = 0.002346 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.347124 B =11932.790032 C =12721.910782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.032 3.968 3 Si 0.982 3.018 4 H -0.264 1.264 5 H -0.269 1.269 6 H -0.259 1.259 7 C -0.490 4.490 8 H 0.078 0.922 9 C -0.003 4.003 10 C -0.109 4.109 11 C -0.208 4.208 12 C 0.286 3.714 13 N -0.734 5.734 14 C 0.146 3.854 15 C -0.072 4.072 16 C -0.068 4.068 17 C -0.098 4.098 18 C -0.101 4.101 19 C 0.009 3.991 20 C 0.011 3.989 21 C -0.104 4.104 22 O -0.329 6.329 23 C 0.205 3.795 24 O -0.326 6.326 25 N -0.535 5.535 26 C -0.001 4.001 27 H 0.286 0.714 28 H 0.114 0.886 29 H 0.119 0.881 30 H 0.399 0.601 31 H 0.041 0.959 32 H 0.054 0.946 33 H 0.103 0.897 34 H 0.089 0.911 35 H 0.164 0.836 36 H 0.155 0.845 37 H 0.139 0.861 38 H 0.105 0.895 39 H 0.158 0.842 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.713 -14.839 10.392 22.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.181 4.181 3 Si 0.803 3.197 4 H -0.189 1.189 5 H -0.194 1.194 6 H -0.183 1.183 7 C -0.521 4.521 8 H 0.096 0.904 9 C -0.008 4.008 10 C -0.136 4.136 11 C -0.232 4.232 12 C 0.052 3.948 13 N -0.373 5.373 14 C 0.021 3.979 15 C -0.110 4.110 16 C -0.069 4.069 17 C -0.116 4.116 18 C -0.119 4.119 19 C -0.035 4.035 20 C -0.033 4.033 21 C -0.123 4.123 22 O -0.246 6.246 23 C 0.094 3.906 24 O -0.243 6.243 25 N -0.252 5.252 26 C -0.158 4.158 27 H 0.096 0.904 28 H 0.132 0.868 29 H 0.137 0.863 30 H 0.234 0.766 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.121 0.879 34 H 0.108 0.892 35 H 0.182 0.818 36 H 0.173 0.827 37 H 0.157 0.843 38 H 0.122 0.878 39 H 0.175 0.825 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.947 -15.282 10.206 22.479 hybrid contribution -0.411 1.439 -0.087 1.499 sum -13.358 -13.843 10.119 21.736 Atomic orbital electron populations 1.69872 1.08894 1.30265 1.37618 1.26701 0.95496 1.04391 0.91534 0.85201 0.79057 0.76075 0.79335 1.18902 1.19381 1.18271 1.19553 0.97874 0.91864 1.42850 0.90360 1.18660 0.94390 0.94445 0.93330 1.21334 0.97544 0.97006 0.97669 1.21024 1.02900 0.92446 1.06847 1.18086 0.92221 0.86859 0.97669 1.43685 1.31003 1.04366 1.58289 1.21146 0.85865 0.97204 0.93659 1.20607 0.94686 0.95427 1.00268 1.19507 0.93057 0.99881 0.94418 1.21194 0.99143 0.99050 0.92218 1.20388 0.87340 1.02152 1.02037 1.20131 0.87734 1.05068 0.90600 1.19996 0.85296 1.04805 0.93195 1.20179 0.88673 1.03086 1.00368 1.87333 1.14704 1.83110 1.39491 1.26088 0.92541 1.02185 0.69776 1.87316 1.14115 1.87814 1.35024 1.66616 1.09757 1.32419 1.16377 1.22379 1.02070 0.87403 1.03928 0.90399 0.86771 0.86324 0.76601 0.94068 0.92828 0.87897 0.89210 0.81848 0.82736 0.84285 0.87777 0.82512 0.84654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.33 10.91 21.82 0.24 -44.09 16 2 C 0.03 1.61 5.19 85.23 0.44 2.05 16 3 Si 0.98 38.57 29.59 68.60 2.03 40.60 16 4 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 5 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 6 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 7 C -0.49 -26.55 9.07 23.39 0.21 -26.33 16 8 H 0.08 4.05 7.90 -2.91 -0.02 4.02 16 9 C 0.00 -0.17 5.59 -21.18 -0.12 -0.29 16 10 C -0.11 -5.77 8.74 22.64 0.20 -5.57 16 11 C -0.21 -9.75 9.24 22.23 0.21 -9.54 16 12 C 0.29 12.78 7.64 133.32 1.02 13.80 16 13 N -0.73 -24.45 5.70 -344.87 -1.97 -26.41 16 14 C 0.15 3.80 4.85 86.38 0.42 4.22 16 15 C -0.07 -1.28 5.45 29.85 0.16 -1.12 16 16 C -0.07 -1.25 5.13 -19.86 -0.10 -1.35 16 17 C -0.10 -1.59 9.69 22.27 0.22 -1.38 16 18 C -0.10 -1.78 10.06 22.34 0.22 -1.55 16 19 C 0.01 0.19 7.15 22.59 0.16 0.35 16 20 C 0.01 0.26 7.15 22.59 0.16 0.42 16 21 C -0.10 -2.21 9.71 22.34 0.22 -1.99 16 22 O -0.33 -7.35 11.40 -76.04 -0.87 -8.22 16 23 C 0.20 3.01 8.89 113.37 1.01 4.02 16 24 O -0.33 -6.75 11.40 -76.10 -0.87 -7.61 16 25 N -0.54 -26.09 10.37 -191.21 -1.98 -28.07 16 26 C 0.00 -0.04 10.97 85.36 0.94 0.90 16 27 H 0.29 13.70 8.30 -92.71 -0.77 12.93 16 28 H 0.11 6.27 6.20 -2.91 -0.02 6.25 16 29 H 0.12 4.91 6.64 -2.91 -0.02 4.89 16 30 H 0.40 11.88 8.59 -92.71 -0.80 11.08 16 31 H 0.04 1.19 7.89 -2.39 -0.02 1.17 16 32 H 0.05 1.42 7.91 -2.38 -0.02 1.40 16 33 H 0.10 1.46 8.08 -2.38 -0.02 1.44 16 34 H 0.09 1.47 8.08 -2.39 -0.02 1.45 16 35 H 0.16 1.84 8.06 -2.91 -0.02 1.81 16 36 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 37 H 0.14 2.74 8.06 -2.91 -0.02 2.71 16 38 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.16 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.14 6.51 8.06 -2.91 -0.02 6.48 16 Total: -1.00 -67.44 343.34 2.23 -65.21 By element: Atomic # 1 Polarization: 31.68 SS G_CDS: 0.29 Total: 31.97 kcal Atomic # 6 Polarization: -28.73 SS G_CDS: 5.36 Total: -23.37 kcal Atomic # 7 Polarization: -94.87 SS G_CDS: -3.71 Total: -98.58 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -1.73 Total: -15.83 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 2.03 Total: 40.60 kcal Total: -67.44 2.23 -65.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162082939.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.220 kcal (2) G-P(sol) polarization free energy of solvation -67.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds