Wall clock time and date at job start Fri Apr 10 2020 22:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86799 * 119.99971 * 2 1 4 4 H 1.48500 * 109.47410 * 274.67688 * 3 2 1 5 5 H 1.48497 * 109.47054 * 34.67900 * 3 2 1 6 6 H 1.48503 * 109.47150 * 154.68024 * 3 2 1 7 7 C 1.39934 * 120.00115 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00137 * 162.37606 * 7 2 1 9 9 C 1.41430 * 119.99673 * 342.36513 * 7 2 1 10 10 C 1.40792 * 120.62350 * 335.62938 * 9 7 2 11 11 N 1.31467 * 120.56187 * 179.97438 * 10 9 7 12 12 C 1.32020 * 122.05788 * 359.70006 * 11 10 9 13 13 C 1.39292 * 121.20593 * 0.59229 * 12 11 10 14 14 N 1.39726 * 120.36157 * 179.69173 * 13 12 11 15 15 C 1.46504 * 119.99871 * 359.72777 * 14 13 12 16 16 C 1.52995 * 109.46939 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.47325 * 180.02562 * 16 15 14 18 18 C 1.38257 * 119.92819 * 270.02441 * 17 16 15 19 19 C 1.38235 * 120.14693 * 179.74262 * 18 17 16 20 20 C 1.38547 * 120.02765 * 0.43418 * 19 18 17 21 21 C 1.39269 * 119.82717 * 359.56331 * 20 19 18 22 22 C 1.38233 * 119.93192 * 89.99234 * 17 16 15 23 23 O 1.36503 * 108.64285 * 180.24906 * 21 20 19 24 24 C 1.43990 * 105.48161 * 342.72343 * 23 21 20 25 25 O 1.36502 * 131.53254 * 179.87596 * 20 19 18 26 26 C 1.38694 * 119.27568 * 359.42589 * 13 12 11 27 27 H 0.96999 * 120.00103 * 359.97438 * 1 2 3 28 28 H 1.08004 * 119.72054 * 359.95953 * 10 9 7 29 29 H 1.08002 * 119.39342 * 180.28932 * 12 11 10 30 30 H 0.96994 * 119.99766 * 179.72676 * 14 13 12 31 31 H 1.09007 * 109.46691 * 60.00092 * 15 14 13 32 32 H 1.08996 * 109.47082 * 299.99761 * 15 14 13 33 33 H 1.09001 * 109.47361 * 60.00295 * 16 15 14 34 34 H 1.09005 * 109.47243 * 299.99757 * 16 15 14 35 35 H 1.08000 * 119.92278 * 359.97438 * 18 17 16 36 36 H 1.08001 * 119.98665 * 180.32863 * 19 18 17 37 37 H 1.07997 * 119.98828 * 0.04004 * 22 17 16 38 38 H 1.08991 * 110.56978 * 268.54765 * 24 23 21 39 39 H 1.09000 * 110.56455 * 145.67824 * 24 23 21 40 40 H 1.08004 * 120.92832 * 180.25030 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3909 2.1036 -1.3954 5 1 1.4927 2.6221 0.7966 6 1 3.5858 1.4136 0.5988 7 6 2.0080 -1.2118 -0.0005 8 1 3.0499 -1.2337 -0.2837 9 6 1.3506 -2.4080 0.3700 10 6 0.2152 -2.3744 1.2018 11 7 -0.3952 -3.4870 1.5450 12 6 0.0171 -4.6698 1.1282 13 6 1.1355 -4.7962 0.3075 14 7 1.5603 -6.0574 -0.1182 15 6 0.8318 -7.2565 0.3034 16 6 1.4982 -8.4957 -0.2975 17 6 0.7486 -9.7292 0.1356 18 6 1.1094 -10.3827 1.2993 19 6 0.4214 -11.5114 1.7036 20 6 -0.6266 -11.9960 0.9379 21 6 -0.9902 -11.3377 -0.2343 22 6 -0.2989 -10.2044 -0.6311 23 8 -2.0420 -12.0002 -0.7985 24 6 -2.0548 -13.2997 -0.1786 25 8 -1.4505 -13.0709 1.1082 26 6 1.8196 -3.6560 -0.0870 27 1 -0.4850 0.8400 0.0004 28 1 -0.1574 -1.4265 1.5611 29 1 -0.5197 -5.5560 1.4330 30 1 2.3374 -6.1390 -0.6928 31 1 -0.2000 -7.1953 -0.0429 32 1 0.8465 -7.3270 1.3910 33 1 2.5301 -8.5571 0.0485 34 1 1.4832 -8.4251 -1.3851 35 1 1.9283 -10.0082 1.8957 36 1 0.7021 -12.0168 2.6159 37 1 -0.5786 -9.6921 -1.5397 38 1 -1.4628 -14.0069 -0.7594 39 1 -3.0774 -13.6588 -0.0631 40 1 2.6877 -3.7227 -0.7261 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162087584.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:41:20 Heat of formation + Delta-G solvation = -12.483377 kcal Electronic energy + Delta-G solvation = -23682.414759 eV Core-core repulsion = 20041.462244 eV Total energy + Delta-G solvation = -3640.952515 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.41196 -38.81217 -38.24872 -36.55065 -35.67471 -33.82319 -32.50726 -30.75639 -30.54603 -29.04635 -26.98281 -25.85666 -25.56264 -23.51928 -23.22399 -21.99830 -21.23497 -20.49833 -18.19853 -17.86393 -17.64418 -17.40578 -16.46085 -15.70685 -15.40396 -15.12487 -14.98760 -14.77290 -14.71292 -14.15623 -14.08947 -13.73368 -13.54431 -13.24722 -13.08492 -12.97296 -12.38577 -12.18084 -12.01555 -11.64299 -11.38671 -11.34150 -11.19533 -11.17269 -10.90699 -10.82771 -10.56306 -10.13328 -9.45208 -9.32418 -9.08962 -8.27154 -7.96053 -7.68617 -6.84849 -6.42143 -4.43901 0.86141 0.96962 2.47272 2.76866 3.05920 3.10405 3.14344 3.14554 3.24274 3.28959 3.88965 4.07112 4.22158 4.33255 4.54885 4.68405 4.70053 4.81571 4.89684 4.98267 5.13066 5.15318 5.29724 5.53764 5.77045 5.80174 5.83302 5.94629 6.00210 6.06430 6.15449 6.26401 6.34224 6.51651 6.70872 6.84989 6.85733 7.11335 7.19848 7.53764 7.65789 8.03859 8.31197 8.39226 8.44226 8.79988 8.89672 9.90722 10.12652 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.037542 B = 0.002077 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.652452 B =13475.425970 C =13669.675766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.076 3.924 3 Si 0.911 3.089 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.452 4.452 8 H 0.079 0.921 9 C 0.097 3.903 10 C 0.008 3.992 11 N -0.452 5.452 12 C -0.104 4.104 13 C 0.183 3.817 14 N -0.759 5.759 15 C 0.140 3.860 16 C -0.088 4.088 17 C -0.063 4.063 18 C -0.103 4.103 19 C -0.097 4.097 20 C 0.023 3.977 21 C 0.032 3.968 22 C -0.094 4.094 23 O -0.309 6.309 24 C 0.213 3.787 25 O -0.311 6.311 26 C -0.269 4.269 27 H 0.284 0.716 28 H 0.147 0.853 29 H 0.113 0.887 30 H 0.389 0.611 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.140 0.860 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.083 0.917 39 H 0.130 0.870 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.322 -21.627 -1.172 21.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.143 4.143 3 Si 0.735 3.265 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.184 1.184 7 C -0.482 4.482 8 H 0.098 0.902 9 C 0.091 3.909 10 C -0.159 4.159 11 N -0.159 5.159 12 C -0.261 4.261 13 C 0.083 3.917 14 N -0.393 5.393 15 C 0.015 3.985 16 C -0.125 4.125 17 C -0.064 4.064 18 C -0.121 4.121 19 C -0.116 4.116 20 C -0.021 4.021 21 C -0.012 4.012 22 C -0.113 4.113 23 O -0.225 6.225 24 C 0.101 3.899 25 O -0.227 6.227 26 C -0.299 4.299 27 H 0.095 0.905 28 H 0.164 0.836 29 H 0.131 0.869 30 H 0.222 0.778 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.158 0.842 36 H 0.153 0.847 37 H 0.155 0.845 38 H 0.100 0.900 39 H 0.148 0.852 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.003 -21.696 -0.529 21.703 hybrid contribution 1.134 0.364 -0.994 1.551 sum 1.137 -21.332 -1.523 21.417 Atomic orbital electron populations 1.69809 1.07634 1.29640 1.33947 1.25976 0.94767 1.01524 0.92070 0.86254 0.80724 0.80429 0.79080 1.19541 1.19864 1.18356 1.19512 0.98018 0.90909 1.39763 0.90241 1.18313 0.91912 0.92016 0.88622 1.22815 0.97395 0.94803 1.00901 1.67014 1.29630 0.98530 1.20762 1.21270 1.00236 0.94991 1.09572 1.18511 0.94521 0.84277 0.94438 1.44328 1.34181 1.02671 1.58106 1.21056 0.95603 0.83228 0.98656 1.20751 0.99172 0.90870 1.01746 1.19478 0.95757 0.96570 0.94626 1.20887 1.00482 0.94362 0.96390 1.20066 0.93226 0.97786 1.00490 1.19819 0.95004 0.90794 0.96445 1.19761 0.90199 0.97401 0.93812 1.19995 0.94984 0.94716 1.01561 1.87379 1.45919 1.26752 1.62493 1.25608 1.00751 0.85316 0.78176 1.87355 1.56345 1.46765 1.32272 1.20736 1.06119 0.91517 1.11562 0.90510 0.83589 0.86906 0.77822 0.92797 0.92697 0.89933 0.90148 0.84200 0.84668 0.84540 0.89989 0.85220 0.88351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.22 10.96 55.55 0.61 -19.61 16 2 C 0.08 1.87 5.15 -17.34 -0.09 1.78 16 3 Si 0.91 18.25 29.59 -169.99 -5.03 13.22 16 4 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 5 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 6 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 7 C -0.45 -11.83 9.08 -37.73 -0.34 -12.17 16 8 H 0.08 1.98 7.90 -52.49 -0.41 1.56 16 9 C 0.10 2.61 5.58 -106.70 -0.60 2.01 16 10 C 0.01 0.23 9.89 -16.74 -0.17 0.06 16 11 N -0.45 -12.10 10.33 -12.37 -0.13 -12.23 16 12 C -0.10 -2.52 10.49 -17.08 -0.18 -2.70 16 13 C 0.18 4.10 6.67 -83.70 -0.56 3.55 16 14 N -0.76 -12.80 5.74 -58.57 -0.34 -13.14 16 15 C 0.14 1.92 4.90 -4.04 -0.02 1.90 16 16 C -0.09 -0.87 5.45 -27.89 -0.15 -1.02 16 17 C -0.06 -0.64 5.13 -104.62 -0.54 -1.18 16 18 C -0.10 -0.95 9.69 -39.58 -0.38 -1.34 16 19 C -0.10 -0.94 10.06 -39.47 -0.40 -1.33 16 20 C 0.02 0.26 7.15 -39.08 -0.28 -0.02 16 21 C 0.03 0.38 7.15 -39.08 -0.28 0.10 16 22 C -0.09 -1.02 9.71 -39.47 -0.38 -1.40 16 23 O -0.31 -3.46 11.40 -45.70 -0.52 -3.98 16 24 C 0.21 1.66 8.89 101.05 0.90 2.56 16 25 O -0.31 -3.32 11.40 -45.70 -0.52 -3.84 16 26 C -0.27 -6.59 9.80 -38.39 -0.38 -6.97 16 27 H 0.28 6.59 8.30 -40.82 -0.34 6.26 16 28 H 0.15 4.11 6.16 -52.48 -0.32 3.79 16 29 H 0.11 2.47 6.73 -52.49 -0.35 2.11 16 30 H 0.39 5.74 8.49 -40.82 -0.35 5.39 16 31 H 0.05 0.80 7.95 -51.92 -0.41 0.39 16 32 H 0.05 0.79 7.97 -51.93 -0.41 0.37 16 33 H 0.08 0.72 8.08 -51.93 -0.42 0.30 16 34 H 0.08 0.74 8.08 -51.93 -0.42 0.32 16 35 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 37 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.13 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.10 2.23 8.06 -52.48 -0.42 1.80 16 LS Contribution 343.73 15.07 5.18 5.18 Total: -1.00 -31.17 343.73 -9.36 -40.53 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -4.77 Total: 10.03 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: -3.84 Total: -16.16 kcal Atomic # 7 Polarization: -45.12 SS G_CDS: 0.15 Total: -44.97 kcal Atomic # 8 Polarization: -6.78 SS G_CDS: -1.04 Total: -7.82 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.22 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.17 -9.36 -40.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162087584.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.050 kcal (2) G-P(sol) polarization free energy of solvation -31.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds