Wall clock time and date at job start Fri Apr 10 2020 22:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30590 * 1 3 3 Si 1.86798 * 120.00199 * 2 1 4 4 H 1.48498 * 109.46866 * 239.99882 * 3 2 1 5 5 H 1.48498 * 109.47062 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47419 * 119.99792 * 3 2 1 7 7 C 1.40360 * 119.99678 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99365 * 187.95925 * 7 2 1 9 9 C 1.40172 * 120.00168 * 7.96344 * 7 2 1 10 10 C 1.39063 * 119.74281 * 215.90350 * 9 7 2 11 11 C 1.42027 * 118.74359 * 179.72480 * 10 9 7 12 12 N 1.32208 * 120.83394 * 179.97438 * 11 10 9 13 13 C 1.46498 * 119.99991 * 176.78068 * 12 11 10 14 14 C 1.52996 * 109.47141 * 113.91545 * 13 12 11 15 15 C 1.50700 * 109.47145 * 180.02562 * 14 13 12 16 16 C 1.38250 * 119.92876 * 269.71958 * 15 14 13 17 17 C 1.38243 * 120.14145 * 179.68821 * 16 15 14 18 18 C 1.38541 * 120.03090 * 0.64770 * 17 16 15 19 19 C 1.39272 * 119.82326 * 359.63313 * 18 17 16 20 20 C 1.38244 * 119.92881 * 90.00249 * 15 14 13 21 21 O 1.36502 * 108.63308 * 179.97438 * 19 18 17 22 22 C 1.43986 * 105.49341 * 342.72582 * 21 19 18 23 23 O 1.36500 * 131.53475 * 179.63598 * 18 17 16 24 24 C 1.46916 * 118.33311 * 0.02562 * 11 10 9 25 25 C 1.34369 * 119.37140 * 0.02562 * 24 11 10 26 26 N 1.36434 * 121.21991 * 359.97438 * 25 24 11 27 27 H 0.96998 * 119.09068 * 179.97438 * 26 25 24 28 28 H 0.96993 * 119.99535 * 0.02562 * 1 2 3 29 29 H 1.07996 * 120.62975 * 359.70600 * 10 9 7 30 30 H 1.09001 * 109.47461 * 233.91568 * 13 12 11 31 31 H 1.09001 * 109.47182 * 353.91604 * 13 12 11 32 32 H 1.09004 * 109.47028 * 299.99567 * 14 13 12 33 33 H 1.08996 * 109.47470 * 59.99816 * 14 13 12 34 34 H 1.07997 * 119.92902 * 359.97438 * 16 15 14 35 35 H 1.08002 * 119.97955 * 180.27770 * 17 16 15 36 36 H 1.07994 * 119.98409 * 359.97438 * 20 15 14 37 37 H 1.09005 * 110.57064 * 268.56177 * 22 21 19 38 38 H 1.08994 * 110.57972 * 145.67767 * 22 21 19 39 39 H 1.08002 * 120.31790 * 180.02562 * 24 11 10 40 40 H 1.07998 * 119.39550 * 180.02562 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2399 1.6177 0.0000 4 1 3.0937 1.6962 -1.2125 5 1 1.2750 2.7464 -0.0006 6 1 3.0937 1.6964 1.2125 7 6 2.0076 -1.2156 0.0005 8 1 3.0798 -1.2200 0.1301 9 6 1.3169 -2.4237 -0.1671 10 6 1.7348 -3.5584 0.5196 11 6 1.0159 -4.7698 0.3386 12 7 1.3775 -5.8734 0.9706 13 6 0.5816 -7.0947 0.8256 14 6 1.4052 -8.1562 0.0937 15 6 0.5863 -9.4124 -0.0559 16 6 0.6352 -10.3883 0.9221 17 6 -0.1192 -11.5395 0.7924 18 6 -0.9163 -11.7238 -0.3256 19 6 -0.9610 -10.7433 -1.3137 20 6 -0.2077 -9.5891 -1.1738 21 8 -1.8085 -11.1569 -2.3005 22 6 -1.9651 -12.5747 -2.1039 23 8 -1.7362 -12.7513 -0.6931 24 6 -0.1390 -4.7662 -0.5695 25 6 -0.4797 -3.6284 -1.1979 26 7 0.2267 -2.4768 -1.0078 27 1 -0.0462 -1.6732 -1.4775 28 1 -0.4849 0.8400 -0.0004 29 1 2.5901 -3.5193 1.1779 30 1 0.3039 -7.4666 1.8119 31 1 -0.3195 -6.8754 0.2530 32 1 1.6829 -7.7844 -0.8926 33 1 2.3064 -8.3756 0.6663 34 1 1.2604 -10.2489 1.7916 35 1 -0.0825 -12.2981 1.5603 36 1 -0.2407 -8.8270 -1.9382 37 1 -1.2250 -13.1259 -2.6841 38 1 -2.9740 -12.8893 -2.3703 39 1 -0.7088 -5.6694 -0.7305 40 1 -1.3288 -3.6252 -1.8652 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162087917.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:41:23 Heat of formation + Delta-G solvation = -2.433517 kcal Electronic energy + Delta-G solvation = -23875.496734 eV Core-core repulsion = 20234.980013 eV Total energy + Delta-G solvation = -3640.516721 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.21564 -38.63311 -38.28188 -36.36969 -35.13312 -33.71821 -32.22129 -30.59113 -30.47292 -29.22528 -27.27336 -26.15741 -25.48935 -23.20000 -22.98519 -21.65578 -21.23455 -19.88280 -18.01526 -17.97267 -17.53186 -17.39847 -16.60596 -16.25346 -15.46694 -14.97707 -14.72180 -14.52911 -14.49663 -13.91799 -13.80137 -13.47372 -13.17165 -13.08364 -12.98885 -12.80595 -12.68671 -12.08046 -11.90093 -11.73496 -11.46188 -11.24334 -11.07331 -10.92040 -10.76736 -10.68943 -10.41439 -10.09000 -9.64492 -9.47498 -8.84024 -8.15133 -8.03035 -7.55638 -7.17429 -5.94988 -4.81066 1.12413 1.20470 2.65794 2.66089 2.71432 2.91607 2.94422 3.15215 3.32506 3.57738 3.70611 4.26407 4.43944 4.48017 4.63808 4.68145 4.97130 5.06677 5.08841 5.23996 5.27525 5.45852 5.55898 5.66596 5.94328 6.00436 6.05749 6.14640 6.21201 6.25434 6.37617 6.46091 6.54346 6.70062 6.73898 6.83675 6.85746 6.88782 7.08176 7.38939 7.69399 7.76112 7.95602 8.20780 8.35423 8.76890 8.87829 9.67786 9.84165 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.034751 B = 0.002246 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.531612 B =12463.100231 C =13035.236842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.077 3.923 3 Si 0.924 3.076 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.261 1.261 7 C -0.480 4.480 8 H 0.100 0.900 9 C 0.338 3.662 10 C -0.344 4.344 11 C 0.283 3.717 12 N -0.670 5.670 13 C 0.068 3.932 14 C -0.073 4.073 15 C -0.054 4.054 16 C -0.109 4.109 17 C -0.096 4.096 18 C 0.013 3.987 19 C 0.032 3.968 20 C -0.099 4.099 21 O -0.311 6.311 22 C 0.214 3.786 23 O -0.313 6.313 24 C -0.303 4.303 25 C 0.127 3.873 26 N -0.597 5.597 27 H 0.411 0.589 28 H 0.290 0.710 29 H 0.115 0.885 30 H 0.047 0.953 31 H 0.028 0.972 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.139 0.861 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.081 0.919 38 H 0.128 0.872 39 H 0.118 0.882 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.388 -13.641 -5.121 14.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.140 4.140 3 Si 0.748 3.252 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.185 1.185 7 C -0.514 4.514 8 H 0.118 0.882 9 C 0.229 3.771 10 C -0.372 4.372 11 C 0.120 3.880 12 N -0.396 5.396 13 C -0.064 4.064 14 C -0.111 4.111 15 C -0.055 4.055 16 C -0.127 4.127 17 C -0.115 4.115 18 C -0.031 4.031 19 C -0.012 4.012 20 C -0.118 4.118 21 O -0.227 6.227 22 C 0.102 3.898 23 O -0.230 6.230 24 C -0.333 4.333 25 C -0.003 4.003 26 N -0.205 5.205 27 H 0.248 0.752 28 H 0.101 0.899 29 H 0.133 0.867 30 H 0.066 0.934 31 H 0.046 0.954 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.157 0.843 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.098 0.902 38 H 0.146 0.854 39 H 0.136 0.864 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.171 -14.047 -4.563 15.106 hybrid contribution -1.007 0.749 -0.885 1.536 sum -4.178 -13.298 -5.449 14.966 Atomic orbital electron populations 1.69420 1.07591 1.30660 1.37425 1.26081 0.94999 1.01922 0.91008 0.86073 0.79838 0.78898 0.80375 1.18619 1.20264 1.18493 1.19372 0.96576 0.88814 1.46653 0.88179 1.17660 0.81399 0.94094 0.83917 1.20387 1.10914 0.90877 1.15066 1.20303 0.88002 0.92821 0.86886 1.73402 1.32654 0.98354 1.35172 1.21722 0.94626 0.92758 0.97259 1.20733 0.97810 0.90827 1.01773 1.19950 0.96546 0.96523 0.92436 1.20901 0.99904 0.92338 0.99563 1.20051 0.95928 0.99344 0.96189 1.19751 0.96591 0.88803 0.97930 1.19773 0.95006 0.97134 0.89323 1.20025 0.96287 0.95630 0.99830 1.87354 1.61967 1.23547 1.49868 1.25563 1.03565 0.80382 0.80330 1.87329 1.63687 1.47006 1.24947 1.22296 1.05314 0.97375 1.08289 1.21266 0.94666 0.87009 0.97383 1.42074 1.27755 1.10545 1.40101 0.75211 0.89915 0.86684 0.93441 0.95403 0.91459 0.90501 0.84329 0.84954 0.84827 0.90181 0.85450 0.86416 0.85179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -18.34 11.49 55.57 0.64 -17.70 16 2 C 0.08 1.69 5.25 -17.28 -0.09 1.60 16 3 Si 0.92 16.63 29.57 -169.99 -5.03 11.61 16 4 H -0.26 -4.64 7.11 56.52 0.40 -4.24 16 5 H -0.28 -4.91 7.11 56.52 0.40 -4.51 16 6 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 7 C -0.48 -11.30 9.01 -38.06 -0.34 -11.64 16 8 H 0.10 2.28 7.86 -52.49 -0.41 1.87 16 9 C 0.34 8.13 6.21 -84.16 -0.52 7.61 16 10 C -0.34 -8.64 9.83 -37.83 -0.37 -9.01 16 11 C 0.28 6.82 6.80 -82.74 -0.56 6.26 16 12 N -0.67 -15.85 10.62 -57.24 -0.61 -16.46 16 13 C 0.07 1.32 6.22 -4.05 -0.03 1.30 16 14 C -0.07 -1.20 5.67 -27.89 -0.16 -1.36 16 15 C -0.05 -0.77 5.13 -104.62 -0.54 -1.30 16 16 C -0.11 -1.37 9.69 -39.58 -0.38 -1.76 16 17 C -0.10 -1.17 10.06 -39.47 -0.40 -1.57 16 18 C 0.01 0.18 7.15 -39.09 -0.28 -0.10 16 19 C 0.03 0.45 7.15 -39.09 -0.28 0.17 16 20 C -0.10 -1.41 9.71 -39.47 -0.38 -1.80 16 21 O -0.31 -4.07 11.40 -45.69 -0.52 -4.59 16 22 C 0.21 2.02 8.89 101.05 0.90 2.91 16 23 O -0.31 -3.89 11.40 -45.69 -0.52 -4.41 16 24 C -0.30 -6.37 9.37 -37.44 -0.35 -6.72 16 25 C 0.13 2.44 11.15 -16.87 -0.19 2.25 16 26 N -0.60 -12.74 4.80 -10.84 -0.05 -12.79 16 27 H 0.41 8.33 7.04 -40.82 -0.29 8.04 16 28 H 0.29 5.92 8.29 -40.82 -0.34 5.58 16 29 H 0.12 2.95 8.06 -52.49 -0.42 2.53 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.03 0.54 5.26 -51.93 -0.27 0.27 16 32 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 33 H 0.08 1.24 8.08 -51.93 -0.42 0.82 16 34 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 35 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 36 H 0.13 1.82 8.06 -52.49 -0.42 1.39 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.13 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.12 2.27 5.92 -52.49 -0.31 1.96 16 40 H 0.13 1.95 8.06 -52.49 -0.42 1.52 16 LS Contribution 343.15 15.07 5.17 5.17 Total: -1.00 -28.24 343.15 -9.53 -37.77 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -4.64 Total: 14.55 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: -3.97 Total: -13.14 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: -0.02 Total: -46.95 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: -1.04 Total: -9.00 kcal Atomic # 14 Polarization: 16.63 SS G_CDS: -5.03 Total: 11.61 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.24 -9.53 -37.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162087917.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.341 kcal (2) G-P(sol) polarization free energy of solvation -28.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds