Wall clock time and date at job start Fri Apr 10 2020 22:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31079 * 1 3 3 Si 1.86801 * 119.99851 * 2 1 4 4 H 1.48502 * 109.47301 * 239.99631 * 3 2 1 5 5 H 1.48501 * 109.47114 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47156 * 119.99925 * 3 2 1 7 7 C 1.39678 * 120.00086 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99688 * 180.02562 * 7 2 1 9 9 C 1.40897 * 120.00126 * 0.02562 * 7 2 1 10 10 C 1.38962 * 126.93387 * 21.57819 * 9 7 2 11 11 N 1.35680 * 109.23739 * 179.41822 * 10 9 7 12 12 H 0.96992 * 124.69550 * 179.97438 * 11 10 9 13 13 C 1.38136 * 110.59724 * 0.69886 * 11 10 9 14 14 C 1.39205 * 132.73910 * 179.20989 * 13 11 10 15 15 C 1.37938 * 120.13314 * 179.97438 * 14 13 11 16 16 C 1.38504 * 120.70783 * 0.02562 * 15 14 13 17 17 C 1.38688 * 120.15290 * 0.02562 * 16 15 14 18 18 N 1.39399 * 120.22936 * 179.97438 * 17 16 15 19 19 C 1.46502 * 120.00032 * 355.74311 * 18 17 16 20 20 C 1.52997 * 109.47190 * 180.02562 * 19 18 17 21 21 H 1.08998 * 109.47384 * 304.99534 * 20 19 18 22 22 O 1.42897 * 109.47305 * 64.99820 * 20 19 18 23 23 C 1.50701 * 109.46930 * 184.99900 * 20 19 18 24 24 C 1.34519 * 125.79300 * 99.71657 * 23 20 19 25 25 C 1.41379 * 106.84202 * 179.88889 * 24 23 20 26 26 C 1.34515 * 106.84143 * 0.36795 * 25 24 23 27 27 O 1.34306 * 108.42057 * 359.77596 * 26 25 24 28 28 C 1.39809 * 119.54284 * 0.25172 * 17 16 15 29 29 H 0.96991 * 120.00244 * 0.02562 * 1 2 3 30 30 H 1.07998 * 125.38451 * 0.02562 * 10 9 7 31 31 H 1.08001 * 119.93409 * 0.03296 * 14 13 11 32 32 H 1.07999 * 119.64851 * 180.02562 * 15 14 13 33 33 H 1.07998 * 119.92111 * 180.02562 * 16 15 14 34 34 H 0.97004 * 120.00360 * 175.74117 * 18 17 16 35 35 H 1.08993 * 109.47414 * 59.99869 * 19 18 17 36 36 H 1.09007 * 109.46675 * 299.99974 * 19 18 17 37 37 H 0.96702 * 114.00393 * 60.00094 * 22 20 19 38 38 H 1.08000 * 126.57633 * 0.02562 * 24 23 20 39 39 H 1.07997 * 126.57801 * 180.16820 * 25 24 23 40 40 H 1.08003 * 125.78915 * 179.74949 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3108 0.0000 0.0000 3 14 2.2447 1.6178 0.0000 4 1 3.0986 1.6965 -1.2125 5 1 1.2797 2.7465 -0.0006 6 1 3.0985 1.6965 1.2125 7 6 2.0092 -1.2096 0.0005 8 1 3.0892 -1.2096 0.0010 9 6 1.3048 -2.4299 0.0005 10 6 -0.0071 -2.6367 -0.4084 11 7 -0.3171 -3.9502 -0.2687 12 1 -1.1772 -4.3409 -0.4887 13 6 0.7565 -4.6509 0.2456 14 6 0.9380 -5.9900 0.5798 15 6 2.1472 -6.4197 1.0856 16 6 3.1935 -5.5307 1.2683 17 6 3.0350 -4.1919 0.9432 18 7 4.0868 -3.2957 1.1269 19 6 5.3329 -3.7469 1.7513 20 6 6.3149 -2.5765 1.8338 21 1 6.4561 -2.1499 0.8408 22 8 5.7924 -1.5773 2.7116 23 6 7.6381 -3.0673 2.3623 24 6 8.7231 -3.3557 1.6214 25 6 9.7321 -3.7752 2.5185 26 6 9.2008 -3.7259 3.7533 27 8 7.9322 -3.2965 3.6526 28 6 1.8110 -3.7460 0.4354 29 1 -0.4850 0.8399 -0.0004 30 1 -0.6715 -1.8744 -0.7876 31 1 0.1307 -6.6940 0.4419 32 1 2.2796 -7.4604 1.3419 33 1 4.1350 -5.8810 1.6648 34 1 3.9937 -2.3733 0.8413 35 1 5.7699 -4.5468 1.1537 36 1 5.1233 -4.1163 2.7552 37 1 5.6415 -1.8873 3.6151 38 1 8.8080 -3.2791 0.5474 39 1 10.7357 -4.0801 2.2614 40 1 9.7081 -3.9878 4.6701 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162261167.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:41:27 Heat of formation + Delta-G solvation = 21.986102 kcal Electronic energy + Delta-G solvation = -25052.492633 eV Core-core repulsion = 21413.034826 eV Total energy + Delta-G solvation = -3639.457807 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.74290 -39.65742 -37.87937 -36.12383 -34.22403 -33.27896 -33.08121 -31.18498 -29.84675 -28.11286 -27.79459 -26.42701 -24.48805 -23.31227 -21.92819 -21.09440 -20.70176 -20.23577 -19.38511 -18.17337 -17.47756 -16.43849 -16.02715 -15.76391 -15.59613 -15.34746 -14.92847 -14.73886 -14.28403 -13.77646 -13.59206 -13.26927 -13.05657 -12.99362 -12.80210 -12.50051 -12.45615 -12.39629 -11.63605 -11.37318 -11.19267 -11.09869 -10.74601 -10.68162 -10.47643 -10.35691 -10.07906 -9.77737 -9.71075 -9.33139 -9.00124 -8.65594 -7.39520 -6.96055 -6.43556 -6.01563 -3.94939 1.53046 2.43819 2.49605 2.74788 2.78814 3.17595 3.21058 3.26099 3.99464 4.14364 4.30090 4.32683 4.60621 4.69317 4.77555 4.84756 4.95277 4.97494 5.14369 5.58895 5.60867 5.68114 5.74116 5.83295 5.84854 5.95123 6.09440 6.18404 6.30912 6.52036 6.67392 6.87918 6.93082 7.14768 7.21013 7.30129 7.52801 7.54151 7.55086 7.86694 7.95584 8.24642 8.43444 8.62301 8.76594 9.08050 9.19031 9.27875 10.58232 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.011366 B = 0.004659 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2462.911877 B = 6007.873328 C = 8193.852558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.430 4.430 8 H 0.065 0.935 9 C 0.037 3.963 10 C -0.090 4.090 11 N -0.588 5.588 12 H 0.393 0.607 13 C 0.118 3.882 14 C -0.206 4.206 15 C -0.069 4.069 16 C -0.277 4.277 17 C 0.276 3.724 18 N -0.740 5.740 19 C 0.102 3.898 20 C 0.182 3.818 21 H 0.132 0.868 22 O -0.541 6.541 23 C -0.037 4.037 24 C -0.200 4.200 25 C -0.214 4.214 26 C -0.040 4.040 27 O -0.172 6.172 28 C -0.184 4.184 29 H 0.272 0.728 30 H 0.173 0.827 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.412 0.588 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.382 0.618 38 H 0.150 0.850 39 H 0.148 0.852 40 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.740 -6.652 4.455 15.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.146 4.146 3 Si 0.732 3.268 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.463 4.463 8 H 0.083 0.917 9 C 0.032 3.968 10 C -0.214 4.214 11 N -0.188 5.188 12 H 0.226 0.774 13 C 0.005 3.995 14 C -0.230 4.230 15 C -0.089 4.089 16 C -0.303 4.303 17 C 0.172 3.828 18 N -0.374 5.374 19 C -0.024 4.024 20 C 0.122 3.878 21 H 0.149 0.851 22 O -0.346 6.346 23 C -0.088 4.088 24 C -0.219 4.219 25 C -0.233 4.233 26 C -0.108 4.108 27 O -0.068 6.068 28 C -0.194 4.194 29 H 0.082 0.918 30 H 0.189 0.811 31 H 0.114 0.886 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.253 0.747 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.230 0.770 38 H 0.168 0.832 39 H 0.166 0.834 40 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 12.427 -6.051 4.178 14.440 hybrid contribution 0.245 0.421 0.272 0.559 sum 12.673 -5.629 4.450 14.563 Atomic orbital electron populations 1.69687 1.06954 1.27925 1.41848 1.25560 0.94834 1.00252 0.93964 0.86393 0.79765 0.81085 0.79556 1.19529 1.20829 1.19195 1.18450 0.92929 0.89209 1.45725 0.91666 1.17871 0.91954 0.89360 0.97652 1.22552 1.00395 0.82418 1.16060 1.41461 1.11655 1.08525 1.57141 0.77374 1.17903 0.88452 0.92330 1.00826 1.19549 0.98484 0.92418 1.12509 1.20096 0.92413 0.97425 0.98925 1.19942 1.00104 0.91923 1.18294 1.17140 0.85591 0.88544 0.91502 1.44661 1.12006 1.13193 1.67557 1.21832 0.85992 0.95800 0.98739 1.20727 0.83938 0.88667 0.94438 0.85064 1.86669 1.85602 1.37560 1.24748 1.23265 0.98900 1.05179 0.81504 1.21643 0.92833 1.06379 1.01035 1.21840 1.01235 1.07539 0.92716 1.24066 0.82757 1.03727 1.00261 1.83988 1.29396 1.65401 1.27977 1.18983 0.92577 0.96079 1.11790 0.91774 0.81057 0.88614 0.87910 0.88125 0.74750 0.91578 0.92165 0.76991 0.83177 0.83381 0.78072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.02 10.80 55.54 0.60 -21.42 16 2 C 0.06 1.67 5.47 -17.34 -0.09 1.57 16 3 Si 0.91 19.76 29.56 -169.99 -5.02 14.74 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.43 -11.40 8.82 -38.04 -0.34 -11.74 16 8 H 0.07 1.65 5.64 -52.48 -0.30 1.35 16 9 C 0.04 0.98 5.98 -104.82 -0.63 0.36 16 10 C -0.09 -2.30 10.77 -15.58 -0.17 -2.47 16 11 N -0.59 -13.01 5.99 -9.79 -0.06 -13.07 16 12 H 0.39 7.17 8.96 -40.82 -0.37 6.80 16 13 C 0.12 2.70 7.23 -83.91 -0.61 2.10 16 14 C -0.21 -4.12 10.07 -39.33 -0.40 -4.52 16 15 C -0.07 -1.28 10.00 -39.59 -0.40 -1.68 16 16 C -0.28 -5.39 9.32 -39.32 -0.37 -5.76 16 17 C 0.28 5.99 6.67 -83.66 -0.56 5.43 16 18 N -0.74 -14.13 5.67 -58.52 -0.33 -14.46 16 19 C 0.10 1.50 4.55 -4.04 -0.02 1.48 16 20 C 0.18 2.42 3.47 -27.88 -0.10 2.32 16 21 H 0.13 1.69 8.13 -51.93 -0.42 1.26 16 22 O -0.54 -7.98 13.27 -37.35 -0.50 -8.48 16 23 C -0.04 -0.46 6.18 -35.62 -0.22 -0.68 16 24 C -0.20 -2.24 10.80 -39.70 -0.43 -2.66 16 25 C -0.21 -2.08 10.91 -39.70 -0.43 -2.52 16 26 C -0.04 -0.38 12.09 29.42 0.36 -0.02 16 27 O -0.17 -2.05 10.58 3.57 0.04 -2.01 16 28 C -0.18 -4.54 6.27 -104.75 -0.66 -5.19 16 29 H 0.27 6.71 8.30 -40.82 -0.34 6.37 16 30 H 0.17 4.48 6.36 -52.49 -0.33 4.15 16 31 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 32 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 33 H 0.10 1.72 6.73 -52.49 -0.35 1.37 16 34 H 0.41 8.50 5.48 -40.82 -0.22 8.28 16 35 H 0.07 0.92 7.79 -51.93 -0.40 0.52 16 36 H 0.06 0.87 8.10 -51.93 -0.42 0.45 16 37 H 0.38 4.56 8.97 45.56 0.41 4.97 16 38 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 39 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 40 H 0.20 1.09 8.06 -52.48 -0.42 0.67 16 LS Contribution 340.56 15.07 5.13 5.13 Total: -1.00 -30.96 340.56 -8.85 -39.81 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: -3.66 Total: 23.74 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: -5.05 Total: -23.99 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: 0.21 Total: -48.95 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: -0.46 Total: -10.49 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.96 -8.85 -39.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162261167.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.798 kcal (2) G-P(sol) polarization free energy of solvation -30.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds