Wall clock time and date at job start Fri Apr 10 2020 22:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31079 * 1 3 3 Si 1.86801 * 119.99851 * 2 1 4 4 H 1.48502 * 109.47301 * 239.99631 * 3 2 1 5 5 H 1.48501 * 109.47114 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47156 * 119.99925 * 3 2 1 7 7 C 1.39678 * 120.00086 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99688 * 180.02562 * 7 2 1 9 9 C 1.40897 * 120.00126 * 0.02562 * 7 2 1 10 10 C 1.38962 * 126.93387 * 21.57819 * 9 7 2 11 11 N 1.35680 * 109.23739 * 179.41822 * 10 9 7 12 12 H 0.96992 * 124.69550 * 179.97438 * 11 10 9 13 13 C 1.38136 * 110.59724 * 0.69886 * 11 10 9 14 14 C 1.39205 * 132.73910 * 179.20989 * 13 11 10 15 15 C 1.37938 * 120.13314 * 179.97438 * 14 13 11 16 16 C 1.38504 * 120.70783 * 0.02562 * 15 14 13 17 17 C 1.38688 * 120.15290 * 0.02562 * 16 15 14 18 18 N 1.39399 * 120.22936 * 179.97438 * 17 16 15 19 19 C 1.46502 * 120.00032 * 355.74311 * 18 17 16 20 20 C 1.52997 * 109.47190 * 180.02562 * 19 18 17 21 21 H 1.08998 * 109.47384 * 304.99534 * 20 19 18 22 22 O 1.42897 * 109.47305 * 64.99820 * 20 19 18 23 23 C 1.50701 * 109.46930 * 184.99900 * 20 19 18 24 24 C 1.34519 * 125.79300 * 99.71657 * 23 20 19 25 25 C 1.41379 * 106.84202 * 179.88889 * 24 23 20 26 26 C 1.34515 * 106.84143 * 0.36795 * 25 24 23 27 27 O 1.34306 * 108.42057 * 359.77596 * 26 25 24 28 28 C 1.39809 * 119.54284 * 0.25172 * 17 16 15 29 29 H 0.96991 * 120.00244 * 0.02562 * 1 2 3 30 30 H 1.07998 * 125.38451 * 0.02562 * 10 9 7 31 31 H 1.08001 * 119.93409 * 0.03296 * 14 13 11 32 32 H 1.07999 * 119.64851 * 180.02562 * 15 14 13 33 33 H 1.07998 * 119.92111 * 180.02562 * 16 15 14 34 34 H 0.97004 * 120.00360 * 175.74117 * 18 17 16 35 35 H 1.08993 * 109.47414 * 59.99869 * 19 18 17 36 36 H 1.09007 * 109.46675 * 299.99974 * 19 18 17 37 37 H 0.96702 * 114.00393 * 60.00094 * 22 20 19 38 38 H 1.08000 * 126.57633 * 0.02562 * 24 23 20 39 39 H 1.07997 * 126.57801 * 180.16820 * 25 24 23 40 40 H 1.08003 * 125.78915 * 179.74949 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3108 0.0000 0.0000 3 14 2.2447 1.6178 0.0000 4 1 3.0986 1.6965 -1.2125 5 1 1.2797 2.7465 -0.0006 6 1 3.0985 1.6965 1.2125 7 6 2.0092 -1.2096 0.0005 8 1 3.0892 -1.2096 0.0010 9 6 1.3048 -2.4299 0.0005 10 6 -0.0071 -2.6367 -0.4084 11 7 -0.3171 -3.9502 -0.2687 12 1 -1.1772 -4.3409 -0.4887 13 6 0.7565 -4.6509 0.2456 14 6 0.9380 -5.9900 0.5798 15 6 2.1472 -6.4197 1.0856 16 6 3.1935 -5.5307 1.2683 17 6 3.0350 -4.1919 0.9432 18 7 4.0868 -3.2957 1.1269 19 6 5.3329 -3.7469 1.7513 20 6 6.3149 -2.5765 1.8338 21 1 6.4561 -2.1499 0.8408 22 8 5.7924 -1.5773 2.7116 23 6 7.6381 -3.0673 2.3623 24 6 8.7231 -3.3557 1.6214 25 6 9.7321 -3.7752 2.5185 26 6 9.2008 -3.7259 3.7533 27 8 7.9322 -3.2965 3.6526 28 6 1.8110 -3.7460 0.4354 29 1 -0.4850 0.8399 -0.0004 30 1 -0.6715 -1.8744 -0.7876 31 1 0.1307 -6.6940 0.4419 32 1 2.2796 -7.4604 1.3419 33 1 4.1350 -5.8810 1.6648 34 1 3.9937 -2.3733 0.8413 35 1 5.7699 -4.5468 1.1537 36 1 5.1233 -4.1163 2.7552 37 1 5.6415 -1.8873 3.6151 38 1 8.8080 -3.2791 0.5474 39 1 10.7357 -4.0801 2.2614 40 1 9.7081 -3.9878 4.6701 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162261167.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:41:26 Heat of formation + Delta-G solvation = 1.255890 kcal Electronic energy + Delta-G solvation = -25053.391562 eV Core-core repulsion = 21413.034826 eV Total energy + Delta-G solvation = -3640.356736 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.55208 -41.35307 -39.10750 -37.61189 -35.83887 -34.89691 -34.02977 -32.40394 -31.33013 -29.58120 -29.44974 -27.79978 -26.29043 -24.49166 -22.77271 -22.64635 -21.92966 -21.51427 -21.20933 -19.28941 -18.91389 -17.66053 -17.45660 -17.04186 -16.87888 -16.69470 -16.37541 -16.07419 -15.92653 -15.13770 -14.95321 -14.74850 -14.32860 -14.29151 -14.00682 -13.82282 -13.76262 -13.38158 -13.17038 -12.98028 -12.88530 -12.70439 -12.41439 -12.22674 -12.03764 -11.62309 -11.54982 -11.38348 -11.08521 -10.87366 -10.67922 -9.46932 -9.17001 -8.66833 -8.35672 -7.70052 -5.91802 0.70966 0.85698 1.14931 1.42468 1.44372 1.52191 1.66869 1.92804 2.31291 2.39978 2.71760 2.98522 3.25119 3.32151 3.58721 3.68683 3.80740 4.01052 4.13882 4.27366 4.37314 4.49050 4.60225 4.69969 4.71626 4.87620 4.91845 5.01017 5.04829 5.13600 5.23600 5.35803 5.43205 5.57667 5.61619 5.82910 5.98199 6.07978 6.12902 6.14215 6.52736 6.56073 6.77236 6.90101 7.01590 7.18679 7.29412 7.47804 8.66823 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.011366 B = 0.004659 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2462.911877 B = 6007.873328 C = 8193.852558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.021 3.979 3 Si 0.972 3.028 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.454 4.454 8 H 0.067 0.933 9 C 0.002 3.998 10 C -0.107 4.107 11 N -0.584 5.584 12 H 0.409 0.591 13 C 0.110 3.890 14 C -0.217 4.217 15 C -0.056 4.056 16 C -0.274 4.274 17 C 0.260 3.740 18 N -0.743 5.743 19 C 0.106 3.894 20 C 0.190 3.810 21 H 0.130 0.870 22 O -0.561 6.561 23 C -0.061 4.061 24 C -0.202 4.202 25 C -0.226 4.226 26 C -0.035 4.035 27 O -0.187 6.187 28 C -0.226 4.226 29 H 0.275 0.725 30 H 0.157 0.843 31 H 0.124 0.876 32 H 0.146 0.854 33 H 0.128 0.872 34 H 0.402 0.598 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.391 0.609 38 H 0.160 0.840 39 H 0.172 0.828 40 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.979 -8.469 5.473 18.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.187 4.187 3 Si 0.795 3.205 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.488 4.488 8 H 0.085 0.915 9 C -0.004 4.004 10 C -0.232 4.232 11 N -0.187 5.187 12 H 0.245 0.755 13 C -0.003 4.003 14 C -0.240 4.240 15 C -0.076 4.076 16 C -0.300 4.300 17 C 0.155 3.845 18 N -0.375 5.375 19 C -0.018 4.018 20 C 0.130 3.870 21 H 0.147 0.853 22 O -0.368 6.368 23 C -0.111 4.111 24 C -0.222 4.222 25 C -0.245 4.245 26 C -0.102 4.102 27 O -0.083 6.083 28 C -0.236 4.236 29 H 0.085 0.915 30 H 0.174 0.826 31 H 0.142 0.858 32 H 0.164 0.836 33 H 0.146 0.854 34 H 0.240 0.760 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.240 0.760 38 H 0.178 0.822 39 H 0.190 0.810 40 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 14.674 -7.900 5.200 17.458 hybrid contribution -0.338 0.811 0.024 0.879 sum 14.336 -7.088 5.224 16.824 Atomic orbital electron populations 1.69789 1.08130 1.28720 1.42701 1.26345 0.95632 1.03207 0.93480 0.85387 0.78492 0.77170 0.79428 1.18860 1.20057 1.19348 1.18729 0.93240 0.90078 1.46710 0.91523 1.18275 0.92879 0.90664 0.98577 1.22329 1.00196 0.83652 1.16974 1.41290 1.12526 1.07440 1.57433 0.75526 1.18379 0.88043 0.93502 1.00379 1.19921 1.00140 0.91452 1.12528 1.20638 0.91228 0.99322 0.96398 1.20327 1.01561 0.90911 1.17178 1.17431 0.85482 0.89957 0.91634 1.44800 1.12905 1.12428 1.67351 1.21975 0.84525 0.96713 0.98620 1.20563 0.84306 0.87768 0.94321 0.85271 1.86631 1.85928 1.38621 1.25633 1.22973 0.98697 1.07357 0.82103 1.21964 0.92935 1.05405 1.01867 1.22192 1.02089 1.07695 0.92520 1.24905 0.81706 1.01792 1.01788 1.83975 1.30761 1.65847 1.27747 1.19307 0.94687 0.95678 1.13886 0.91529 0.82550 0.85756 0.83633 0.85435 0.76033 0.90345 0.91696 0.75957 0.82213 0.81028 0.74385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -47.35 10.80 21.79 0.24 -47.12 16 2 C 0.02 1.12 5.47 85.15 0.47 1.59 16 3 Si 0.97 41.67 29.56 68.60 2.03 43.69 16 4 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 5 H -0.28 -11.36 7.11 99.48 0.71 -10.66 16 6 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 7 C -0.45 -25.15 8.82 23.27 0.21 -24.95 16 8 H 0.07 3.53 5.64 -2.91 -0.02 3.51 16 9 C 0.00 0.09 5.98 -19.99 -0.12 -0.03 16 10 C -0.11 -5.72 10.77 84.27 0.91 -4.82 16 11 N -0.58 -26.47 5.99 -184.90 -1.11 -27.58 16 12 H 0.41 15.13 8.96 -92.71 -0.83 14.30 16 13 C 0.11 5.01 7.23 38.87 0.28 5.29 16 14 C -0.22 -8.16 10.07 22.43 0.23 -7.94 16 15 C -0.06 -1.90 10.00 22.26 0.22 -1.68 16 16 C -0.27 -9.98 9.32 22.44 0.21 -9.77 16 17 C 0.26 11.21 6.67 38.43 0.26 11.46 16 18 N -0.74 -28.54 5.67 -339.07 -1.92 -30.46 16 19 C 0.11 3.02 4.55 86.38 0.39 3.42 16 20 C 0.19 4.98 3.47 29.85 0.10 5.08 16 21 H 0.13 3.35 8.13 -2.39 -0.02 3.33 16 22 O -0.56 -16.67 13.27 -146.95 -1.95 -18.62 16 23 C -0.06 -1.42 6.18 24.83 0.15 -1.27 16 24 C -0.20 -4.18 10.80 22.19 0.24 -3.94 16 25 C -0.23 -3.78 10.91 22.19 0.24 -3.54 16 26 C -0.03 -0.56 12.09 66.97 0.81 0.25 16 27 O -0.19 -4.12 10.58 -0.51 -0.01 -4.13 16 28 C -0.23 -11.34 6.27 -19.95 -0.13 -11.47 16 29 H 0.27 14.02 8.30 -92.72 -0.77 13.25 16 30 H 0.16 8.70 6.36 -2.91 -0.02 8.68 16 31 H 0.12 3.90 8.06 -2.91 -0.02 3.88 16 32 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 33 H 0.13 3.90 6.73 -2.91 -0.02 3.88 16 34 H 0.40 17.11 5.48 -92.71 -0.51 16.60 16 35 H 0.08 2.04 7.79 -2.39 -0.02 2.02 16 36 H 0.06 1.79 8.10 -2.38 -0.02 1.77 16 37 H 0.39 9.41 8.97 -74.06 -0.66 8.74 16 38 H 0.16 2.83 8.06 -2.91 -0.02 2.80 16 39 H 0.17 1.93 8.06 -2.91 -0.02 1.91 16 40 H 0.24 1.64 8.06 -2.91 -0.02 1.61 16 Total: -1.00 -69.05 340.56 0.87 -68.19 By element: Atomic # 1 Polarization: 59.20 SS G_CDS: -0.88 Total: 58.32 kcal Atomic # 6 Polarization: -46.76 SS G_CDS: 4.47 Total: -42.29 kcal Atomic # 7 Polarization: -102.36 SS G_CDS: -2.79 Total: -105.15 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -1.96 Total: -22.75 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.69 kcal Total: -69.05 0.87 -68.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162261167.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.442 kcal (2) G-P(sol) polarization free energy of solvation -69.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds