Wall clock time and date at job start Fri Apr 10 2020 22:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 120.00480 * 2 1 4 4 H 1.48494 * 109.46920 * 270.00655 * 3 2 1 5 5 H 1.48502 * 109.46791 * 30.00005 * 3 2 1 6 6 H 1.48495 * 109.47230 * 150.00397 * 3 2 1 7 7 C 1.38813 * 119.99567 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99675 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00186 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99896 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47021 * 175.59106 * 10 9 7 12 12 C 1.53002 * 115.55162 * 303.90358 * 11 10 9 13 13 C 1.53004 * 109.46773 * 278.03199 * 12 11 10 14 14 N 1.46502 * 109.46585 * 175.02409 * 13 12 11 15 15 C 1.34781 * 119.99659 * 179.97438 * 14 13 12 16 16 O 1.21282 * 119.99865 * 0.02562 * 15 14 13 17 17 C 1.50695 * 120.00106 * 179.97438 * 15 14 13 18 18 H 1.09001 * 109.47405 * 345.00963 * 17 15 14 19 19 F 1.39903 * 109.47138 * 105.00461 * 17 15 14 20 20 C 1.52996 * 109.47564 * 225.00399 * 17 15 14 21 21 F 1.39899 * 109.47289 * 60.00240 * 20 17 15 22 22 F 1.39904 * 109.47568 * 180.02562 * 20 17 15 23 23 F 1.39900 * 109.46995 * 300.00334 * 20 17 15 24 24 C 1.53008 * 117.51895 * 89.60067 * 11 10 9 25 25 C 1.52995 * 117.50008 * 158.22935 * 11 10 9 26 26 H 0.97003 * 119.99259 * 359.97438 * 1 2 3 27 27 H 0.96995 * 120.00061 * 359.97438 * 9 7 2 28 28 H 1.09002 * 109.46915 * 55.59359 * 10 9 7 29 29 H 1.09002 * 109.47152 * 295.59337 * 10 9 7 30 30 H 1.09001 * 109.47113 * 158.03601 * 12 11 10 31 31 H 1.08995 * 109.47117 * 38.03078 * 12 11 10 32 32 H 1.08994 * 109.46969 * 55.02474 * 13 12 11 33 33 H 1.08997 * 109.46875 * 295.01842 * 13 12 11 34 34 H 0.96992 * 120.00411 * 359.97438 * 14 13 12 35 35 H 1.08995 * 117.49802 * 214.97015 * 24 11 10 36 36 H 1.08999 * 117.49483 * 359.97438 * 24 11 10 37 37 H 1.09003 * 117.50096 * 359.97438 * 25 11 10 38 38 H 1.09003 * 117.49990 * 144.99909 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0017 11 6 1.0675 -4.8176 0.1095 12 6 0.1328 -4.7740 1.3201 13 6 0.8608 -5.3280 2.5465 14 7 0.0094 -5.1770 3.7291 15 6 0.4464 -5.5988 4.9323 16 8 1.5447 -6.1029 5.0360 17 6 -0.4290 -5.4430 6.1490 18 1 -1.2389 -4.7480 5.9273 19 9 -0.9650 -6.6867 6.5002 20 6 0.4049 -4.9005 7.3114 21 9 0.9408 -3.6569 6.9603 22 9 -0.4077 -4.7565 8.4411 23 9 1.4443 -5.7927 7.5959 24 6 0.5112 -5.3994 -1.1918 25 6 1.5330 -6.1923 -0.3744 26 1 -0.4849 0.8401 0.0004 27 1 0.3555 -2.3880 0.0002 28 1 2.7431 -3.6815 0.8457 29 1 2.6233 -3.7491 -0.9290 30 1 -0.7513 -5.3788 1.1184 31 1 -0.1674 -3.7436 1.5104 32 1 1.7906 -4.7792 2.6957 33 1 1.0828 -6.3837 2.3911 34 1 -0.8687 -4.7735 3.6463 35 1 -0.5204 -5.7510 -1.1853 36 1 0.8506 -4.9548 -2.1273 37 1 2.5448 -6.2698 -0.7724 38 1 1.1735 -7.0657 0.1697 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164596589.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:41:34 Heat of formation + Delta-G solvation = -201.190489 kcal Electronic energy + Delta-G solvation = -26307.301722 eV Core-core repulsion = 21685.540287 eV Total energy + Delta-G solvation = -4621.761435 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.120 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.60444 -48.77158 -47.99861 -47.81181 -39.98738 -38.36824 -35.21669 -33.99595 -31.84460 -30.83712 -29.77520 -26.09069 -24.98711 -23.24791 -22.76880 -21.90826 -21.27227 -19.45618 -19.09248 -18.83780 -18.40571 -17.55083 -17.13424 -16.94251 -16.00774 -15.54865 -15.19429 -14.98150 -14.81623 -14.70326 -14.65444 -14.42289 -14.36347 -14.11920 -14.06386 -14.02898 -13.43201 -13.23371 -13.12072 -12.78245 -12.41263 -12.04464 -11.94796 -11.56264 -11.22172 -11.00414 -10.87964 -10.72505 -10.32743 -10.17119 -9.97860 -9.71673 -9.41323 -9.35732 -8.88713 -6.95122 -5.80797 -3.08640 1.64218 2.01800 2.46936 3.07602 3.41492 3.46393 3.47343 3.48409 3.50373 3.85128 3.97464 4.10915 4.42343 4.57688 4.90693 4.97726 5.05201 5.20149 5.40516 5.52153 5.57284 5.61779 5.83864 5.93381 6.06992 6.13040 6.17432 6.35095 6.38058 6.47861 6.69716 6.76642 6.97850 7.61459 7.67391 8.38614 9.50490 10.07563 10.43187 11.42117 Molecular weight = 312.12amu Principal moments of inertia in cm(-1) A = 0.012185 B = 0.003651 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.300294 B = 7667.134000 C = 9298.410277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.012 4.012 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.728 5.728 10 C 0.187 3.813 11 C -0.120 4.120 12 C -0.093 4.093 13 C 0.122 3.878 14 N -0.703 5.703 15 C 0.492 3.508 16 O -0.497 6.497 17 C 0.038 3.962 18 H 0.147 0.853 19 F -0.155 7.155 20 C 0.447 3.553 21 F -0.163 7.163 22 F -0.170 7.170 23 F -0.156 7.156 24 C -0.165 4.165 25 C -0.178 4.178 26 H 0.255 0.745 27 H 0.384 0.616 28 H 0.026 0.974 29 H 0.018 0.982 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.407 0.593 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.469 -13.728 10.339 17.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.372 5.372 10 C 0.060 3.940 11 C -0.121 4.121 12 C -0.131 4.131 13 C 0.000 4.000 14 N -0.355 5.355 15 C 0.272 3.728 16 O -0.370 6.370 17 C -0.003 4.003 18 H 0.165 0.835 19 F -0.135 7.135 20 C 0.392 3.608 21 F -0.144 7.144 22 F -0.151 7.151 23 F -0.137 7.137 24 C -0.202 4.202 25 C -0.215 4.215 26 H 0.064 0.936 27 H 0.218 0.782 28 H 0.044 0.956 29 H 0.036 0.964 30 H 0.083 0.917 31 H 0.111 0.889 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.242 0.758 35 H 0.107 0.893 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.504 -13.992 10.436 17.803 hybrid contribution -0.308 1.194 0.136 1.241 sum -3.812 -12.797 10.572 17.032 Atomic orbital electron populations 1.69653 1.05079 1.25615 1.57952 1.24701 0.95508 0.97597 1.03015 0.86209 0.78732 0.83859 0.77536 1.21735 1.21777 1.20748 1.19236 0.91064 0.84149 1.42536 0.91238 1.42302 1.05853 0.99669 1.89397 1.20182 0.91853 0.84147 0.97835 1.21562 1.00956 0.95043 0.94556 1.21285 0.96841 1.03158 0.91811 1.21559 0.94290 1.01625 0.82506 1.45977 1.21224 1.60943 1.07322 1.19958 0.87502 0.80920 0.84425 1.90858 1.19776 1.41565 1.84841 1.22784 0.98573 0.86197 0.92762 0.83512 1.93013 1.86362 1.41708 1.92428 1.20276 0.79850 0.77037 0.83680 1.93291 1.86813 1.42629 1.91690 1.93252 1.72529 1.95648 1.53675 1.93309 1.59077 1.67302 1.93987 1.22999 0.98256 1.03335 0.95590 1.22979 0.99783 0.94344 1.04409 0.93560 0.78165 0.95616 0.96384 0.91714 0.88924 0.90108 0.91059 0.75809 0.89256 0.88617 0.88849 0.89177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.26 13.06 55.49 0.72 -26.54 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.24 -6.50 9.99 -15.06 -0.15 -6.65 16 8 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 9 N -0.73 -17.49 5.23 -59.91 -0.31 -17.80 16 10 C 0.19 3.61 6.15 -4.04 -0.02 3.58 16 11 C -0.12 -1.78 1.65 -154.51 -0.25 -2.03 16 12 C -0.09 -1.22 5.20 -26.73 -0.14 -1.36 16 13 C 0.12 1.54 5.49 -4.04 -0.02 1.52 16 14 N -0.70 -7.51 5.56 -60.29 -0.33 -7.84 16 15 C 0.49 5.98 6.91 -10.99 -0.08 5.91 16 16 O -0.50 -7.98 15.60 5.56 0.09 -7.89 16 17 C 0.04 0.35 3.78 -27.89 -0.11 0.25 16 18 H 0.15 0.72 8.00 -51.93 -0.42 0.30 16 19 F -0.15 -1.57 17.03 2.25 0.04 -1.53 16 20 C 0.45 4.94 2.86 37.16 0.11 5.05 16 21 F -0.16 -1.97 17.02 2.25 0.04 -1.93 16 22 F -0.17 -1.74 17.30 2.25 0.04 -1.70 16 23 F -0.16 -2.08 15.95 2.25 0.04 -2.04 16 24 C -0.16 -2.22 9.87 -26.73 -0.26 -2.48 16 25 C -0.18 -2.18 9.57 -26.73 -0.26 -2.43 16 26 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 27 H 0.38 9.58 6.80 -40.82 -0.28 9.31 16 28 H 0.03 0.51 7.96 -51.93 -0.41 0.10 16 29 H 0.02 0.36 8.10 -51.93 -0.42 -0.06 16 30 H 0.06 0.71 7.93 -51.93 -0.41 0.30 16 31 H 0.09 1.44 6.94 -51.93 -0.36 1.08 16 32 H 0.08 1.21 7.96 -51.93 -0.41 0.80 16 33 H 0.07 0.87 7.72 -51.93 -0.40 0.47 16 34 H 0.41 3.13 8.36 -40.82 -0.34 2.79 16 35 H 0.09 1.07 8.07 -51.93 -0.42 0.65 16 36 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.09 0.97 7.90 -51.93 -0.41 0.56 16 LS Contribution 342.75 15.07 5.17 5.17 Total: -1.00 -32.12 342.75 -5.50 -37.62 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -4.67 Total: 6.54 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -1.28 Total: 0.91 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: 0.08 Total: -52.18 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: 0.09 Total: -7.89 kcal Atomic # 9 Polarization: -7.36 SS G_CDS: 0.15 Total: -7.20 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.12 -5.50 -37.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164596589.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.571 kcal (2) G-P(sol) polarization free energy of solvation -32.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds