Wall clock time and date at job start Fri Apr 10 2020 22:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 120.00480 * 2 1 4 4 H 1.48494 * 109.46920 * 270.00655 * 3 2 1 5 5 H 1.48502 * 109.46791 * 30.00005 * 3 2 1 6 6 H 1.48495 * 109.47230 * 150.00397 * 3 2 1 7 7 C 1.38813 * 119.99567 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99675 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00186 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99896 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47021 * 175.59106 * 10 9 7 12 12 C 1.53002 * 115.55162 * 303.90358 * 11 10 9 13 13 C 1.53004 * 109.46773 * 278.03199 * 12 11 10 14 14 N 1.46502 * 109.46585 * 175.02409 * 13 12 11 15 15 C 1.34781 * 119.99659 * 179.97438 * 14 13 12 16 16 O 1.21282 * 119.99865 * 0.02562 * 15 14 13 17 17 C 1.50695 * 120.00106 * 179.97438 * 15 14 13 18 18 H 1.09001 * 109.47405 * 345.00963 * 17 15 14 19 19 F 1.39903 * 109.47138 * 105.00461 * 17 15 14 20 20 C 1.52996 * 109.47564 * 225.00399 * 17 15 14 21 21 F 1.39899 * 109.47289 * 60.00240 * 20 17 15 22 22 F 1.39904 * 109.47568 * 180.02562 * 20 17 15 23 23 F 1.39900 * 109.46995 * 300.00334 * 20 17 15 24 24 C 1.53008 * 117.51895 * 89.60067 * 11 10 9 25 25 C 1.52995 * 117.50008 * 158.22935 * 11 10 9 26 26 H 0.97003 * 119.99259 * 359.97438 * 1 2 3 27 27 H 0.96995 * 120.00061 * 359.97438 * 9 7 2 28 28 H 1.09002 * 109.46915 * 55.59359 * 10 9 7 29 29 H 1.09002 * 109.47152 * 295.59337 * 10 9 7 30 30 H 1.09001 * 109.47113 * 158.03601 * 12 11 10 31 31 H 1.08995 * 109.47117 * 38.03078 * 12 11 10 32 32 H 1.08994 * 109.46969 * 55.02474 * 13 12 11 33 33 H 1.08997 * 109.46875 * 295.01842 * 13 12 11 34 34 H 0.96992 * 120.00411 * 359.97438 * 14 13 12 35 35 H 1.08995 * 117.49802 * 214.97015 * 24 11 10 36 36 H 1.08999 * 117.49483 * 359.97438 * 24 11 10 37 37 H 1.09003 * 117.50096 * 359.97438 * 25 11 10 38 38 H 1.09003 * 117.49990 * 144.99909 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0017 11 6 1.0675 -4.8176 0.1095 12 6 0.1328 -4.7740 1.3201 13 6 0.8608 -5.3280 2.5465 14 7 0.0094 -5.1770 3.7291 15 6 0.4464 -5.5988 4.9323 16 8 1.5447 -6.1029 5.0360 17 6 -0.4290 -5.4430 6.1490 18 1 -1.2389 -4.7480 5.9273 19 9 -0.9650 -6.6867 6.5002 20 6 0.4049 -4.9005 7.3114 21 9 0.9408 -3.6569 6.9603 22 9 -0.4077 -4.7565 8.4411 23 9 1.4443 -5.7927 7.5959 24 6 0.5112 -5.3994 -1.1918 25 6 1.5330 -6.1923 -0.3744 26 1 -0.4849 0.8401 0.0004 27 1 0.3555 -2.3880 0.0002 28 1 2.7431 -3.6815 0.8457 29 1 2.6233 -3.7491 -0.9290 30 1 -0.7513 -5.3788 1.1184 31 1 -0.1674 -3.7436 1.5104 32 1 1.7906 -4.7792 2.6957 33 1 1.0828 -6.3837 2.3911 34 1 -0.8687 -4.7735 3.6463 35 1 -0.5204 -5.7510 -1.1853 36 1 0.8506 -4.9548 -2.1273 37 1 2.5448 -6.2698 -0.7724 38 1 1.1735 -7.0657 0.1697 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164596589.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:41:33 Heat of formation + Delta-G solvation = -222.521860 kcal Electronic energy + Delta-G solvation = -26308.226719 eV Core-core repulsion = 21685.540287 eV Total energy + Delta-G solvation = -4622.686432 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.120 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -51.48968 -49.58190 -48.86826 -48.73253 -40.98833 -39.54507 -36.30752 -35.81462 -32.79206 -32.71759 -30.77008 -27.82380 -25.97971 -24.61054 -24.24017 -22.98452 -22.21707 -20.43136 -19.99142 -19.83042 -19.50811 -19.01963 -18.42840 -17.81405 -17.04645 -16.67088 -16.50907 -16.16954 -15.86475 -15.67564 -15.65612 -15.61860 -15.35149 -15.26340 -14.98864 -14.97563 -14.94472 -14.72301 -14.22727 -14.06194 -13.91351 -13.18167 -13.03078 -12.79705 -12.75088 -12.57556 -12.26693 -12.12039 -11.93318 -11.86102 -11.34283 -11.07896 -10.90580 -10.54254 -10.34905 -8.95616 -7.94133 -5.20875 0.74934 1.13232 1.48190 1.48329 1.56780 1.58728 2.22766 2.55220 2.63513 2.70686 2.89698 3.10249 3.32213 3.39732 3.66428 3.83783 3.84474 3.97590 4.08652 4.24583 4.38856 4.47648 4.62463 4.86284 4.90885 4.96712 5.08445 5.11733 5.25323 5.29208 5.35621 5.39663 5.50924 6.09894 6.29049 6.75266 7.36774 8.12367 8.38658 9.28976 Molecular weight = 312.12amu Principal moments of inertia in cm(-1) A = 0.012185 B = 0.003651 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.300294 B = 7667.134000 C = 9298.410277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.067 4.067 3 Si 0.965 3.035 4 H -0.288 1.288 5 H -0.293 1.293 6 H -0.275 1.275 7 C -0.246 4.246 8 H 0.068 0.932 9 N -0.735 5.735 10 C 0.187 3.813 11 C -0.141 4.141 12 C -0.080 4.080 13 C 0.130 3.870 14 N -0.691 5.691 15 C 0.488 3.512 16 O -0.542 6.542 17 C 0.049 3.951 18 H 0.199 0.801 19 F -0.157 7.157 20 C 0.443 3.557 21 F -0.171 7.171 22 F -0.164 7.164 23 F -0.173 7.173 24 C -0.163 4.163 25 C -0.152 4.152 26 H 0.251 0.749 27 H 0.378 0.622 28 H 0.017 0.983 29 H 0.012 0.988 30 H 0.095 0.905 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.081 0.919 34 H 0.423 0.577 35 H 0.110 0.890 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.422 -14.616 10.383 18.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.259 4.259 3 Si 0.795 3.205 4 H -0.215 1.215 5 H -0.220 1.220 6 H -0.200 1.200 7 C -0.378 4.378 8 H 0.086 0.914 9 N -0.378 5.378 10 C 0.061 3.939 11 C -0.142 4.142 12 C -0.118 4.118 13 C 0.007 3.993 14 N -0.343 5.343 15 C 0.269 3.731 16 O -0.419 6.419 17 C 0.009 3.991 18 H 0.215 0.785 19 F -0.137 7.137 20 C 0.387 3.613 21 F -0.153 7.153 22 F -0.145 7.145 23 F -0.155 7.155 24 C -0.200 4.200 25 C -0.190 4.190 26 H 0.060 0.940 27 H 0.211 0.789 28 H 0.035 0.965 29 H 0.029 0.971 30 H 0.113 0.887 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.261 0.739 35 H 0.128 0.872 36 H 0.099 0.901 37 H 0.113 0.887 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.464 -14.894 10.472 18.746 hybrid contribution 0.042 1.433 0.104 1.437 sum -4.423 -13.461 10.575 17.681 Atomic orbital electron populations 1.69780 1.06242 1.25969 1.59392 1.25406 0.96345 1.00513 1.03683 0.85262 0.77758 0.80102 0.77380 1.21523 1.21974 1.19977 1.19578 0.91307 0.85610 1.41346 0.91382 1.42428 1.05703 1.00517 1.89132 1.20230 0.92689 0.84181 0.96821 1.21414 1.01454 0.94956 0.96396 1.21143 0.97425 1.02073 0.91137 1.21370 0.93368 1.01612 0.82996 1.45865 1.21645 1.60234 1.06552 1.20426 0.87249 0.80040 0.85352 1.90840 1.21842 1.43602 1.85609 1.22861 0.99033 0.86927 0.90321 0.78457 1.93014 1.86202 1.42192 1.92288 1.20565 0.79682 0.76542 0.84495 1.93273 1.87046 1.43170 1.91787 1.93263 1.72139 1.95580 1.53499 1.93273 1.60121 1.67863 1.94204 1.23058 0.99764 1.03091 0.94130 1.23062 0.99722 0.93366 1.02805 0.93963 0.78874 0.96515 0.97057 0.88664 0.91655 0.93141 0.90053 0.73859 0.87177 0.90089 0.88702 0.86627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.66 13.06 21.65 0.28 -56.37 16 2 C -0.07 -3.74 5.50 84.86 0.47 -3.27 16 3 Si 0.97 45.51 29.55 68.60 2.03 47.54 16 4 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 5 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 6 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.25 -13.56 9.99 84.03 0.84 -12.72 16 8 H 0.07 3.68 7.83 -2.91 -0.02 3.65 16 9 N -0.73 -35.76 5.23 -343.45 -1.80 -37.55 16 10 C 0.19 7.27 6.15 86.38 0.53 7.80 16 11 C -0.14 -4.00 1.65 -52.18 -0.09 -4.09 16 12 C -0.08 -1.96 5.20 30.60 0.16 -1.80 16 13 C 0.13 3.10 5.49 86.38 0.47 3.57 16 14 N -0.69 -13.50 5.56 -463.06 -2.57 -16.08 16 15 C 0.49 11.22 6.91 87.65 0.61 11.83 16 16 O -0.54 -17.31 15.60 -3.04 -0.05 -17.36 16 17 C 0.05 0.81 3.78 29.84 0.11 0.92 16 18 H 0.20 1.17 8.00 -2.39 -0.02 1.16 16 19 F -0.16 -2.84 17.03 44.97 0.77 -2.07 16 20 C 0.44 9.31 2.86 71.98 0.21 9.51 16 21 F -0.17 -4.03 17.02 44.97 0.77 -3.27 16 22 F -0.16 -3.10 17.30 44.97 0.78 -2.33 16 23 F -0.17 -4.61 15.95 44.97 0.72 -3.89 16 24 C -0.16 -4.05 9.87 30.60 0.30 -3.75 16 25 C -0.15 -3.33 9.57 30.59 0.29 -3.04 16 26 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 27 H 0.38 19.13 6.80 -92.71 -0.63 18.50 16 28 H 0.02 0.68 7.96 -2.39 -0.02 0.66 16 29 H 0.01 0.46 8.10 -2.39 -0.02 0.44 16 30 H 0.09 1.76 7.93 -2.39 -0.02 1.75 16 31 H 0.06 1.99 6.94 -2.39 -0.02 1.97 16 32 H 0.05 1.53 7.96 -2.39 -0.02 1.51 16 33 H 0.08 1.81 7.72 -2.39 -0.02 1.79 16 34 H 0.42 5.39 8.36 -92.71 -0.78 4.62 16 35 H 0.11 2.28 8.07 -2.39 -0.02 2.26 16 36 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.12 2.00 7.90 -2.39 -0.02 1.98 16 Total: -1.00 -70.36 342.75 4.54 -65.82 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: -0.29 Total: 20.60 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: 3.90 Total: 4.96 kcal Atomic # 7 Polarization: -105.92 SS G_CDS: -4.09 Total: -110.00 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.05 Total: -17.36 kcal Atomic # 9 Polarization: -14.58 SS G_CDS: 3.03 Total: -11.56 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -70.36 4.54 -65.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164596589.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.703 kcal (2) G-P(sol) polarization free energy of solvation -70.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds